BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37220.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944179 jgi|Araly1|944179|scaffold_700408.1 893 0.0
> Ahg944179 jgi|Araly1|944179|scaffold_700408.1
Length=649
Score = 893 bits (483), Expect = 0.0
Identities = 599/655 (91%), Gaps = 8/655 (1%)
Strand=Plus/Plus
Query 7 AAACAAACTAAAACTTAAAAATGGGAAGGGGTGAGTTTTTGGCCATGAAGACTGAGGAGA 66
||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AAATAAAATAAAACTTAAAAATGGGGAGGGTTGAGTTTTTGGCCATGAAGACTGAGGAGA 60
Query 67 ACGCGGCTAACCTGATCAATTCCGATATGAATGAGTTCGTCGCCGCTGCAAAGAAGCTCG 126
|| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 61 ACACGGCGAACCTGATCAATTCTGATCTGAATGAGTTCGTCGCCGCTGCGAAGAAGCTCG 120
Query 127 TGAAAGACGTAGGGATGCTCGGCGGGGTAGGTTTTGGCACGTCAGTCCTCCAATGGGCCG 186
||||||| |||||||||||||||||| |||| ||||||||||| |||| ||||||||||
Sbjct 121 TGAAAGATGTAGGGATGCTCGGCGGGTTAGGCTTTGGCACGTCTTTCCTTCAATGGGCCG 180
Query 187 CTTCAATCTTC-GCTATTTATCTGTTGATATTGGATCGTACCAACTGGAAAACCAAAATG 245
|||||||| || || ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 181 CTTCAATC-TCGGCCATTTATCTGTTGATATTGGATCGCACCAACTGGAGAACCAAAATG 239
Query 246 TTGACCACCCTTTTAGTACCATACATCTTTTTCACACTTCCTTCGGTTATCTTCCAGTTC 305
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 240 TTGACTACCCTTTTAGTGCCATACATTTTTTTCACACTTCCTTCGGTTATCTTTCAGTTC 299
Query 306 TTTAGCGGAGACTTTGGGAAATGGATTGCTCTCATCGCGATCATAGTCAGGCTTTTCTTC 365
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 300 TTTAGCGGAGATTTTGGGAAATGGATTGCTCTCATCGCGATCACAATCAGGCTTTTCTTC 359
Query 366 CCTAAAGAATTTCCAGAGTGGCTAGAGATTCCGGTAGCATTGATTCTTATTGTGGTGG-T 424
||||||||||||||||| |||||||||||||||| || ||| |||||| || | |||| |
Sbjct 360 CCTAAAGAATTTCCAGATTGGCTAGAGATTCCGGCAGGATTAATTCTTCTTATAGTGGTT 419
Query 425 GTCGCCGAGCCTTATAGCTTGGACACTAAGAGAAAGCTGGGTTGGAGCAGTCATATGTCT 484
| | |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 420 G-CACCGAGCCTCATAGCTTGGACACTAAGAGAAAGTTGGGTTGGGGCAGTAATATGTCT 478
Query 485 AGTAATAGCATGTTACCTTTTCCATGAACACATTAAAGCTTCAGGTGGATTCAAAAACTC 544
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 TGTAATAGCATGTTACCTTTTCCATGAACACATTAAAGCTTCTGGTGGATTCAAAAACTC 538
Query 545 TTTTACTCAAAAGAATGGAATCTCCAATACCATTGGGATCGTTGCCCTCCTCGTTTACCC 604
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 539 ATTTACTCAGAAGAATGGAATCTCCAATACCATTGGGATCGTTGCTCTCCTCGTTTATCC 598
Query 605 GGTTTGGACCATCTTCTTTCACATCTTTTAAGTCAATCCGACCCATTGGTTTGTA 659
||| |||||||| || ||||||||||| ||||||||| ||| ||||| |||||
Sbjct 599 GGTCTGGACCATATTTTTTCACATCTTCTAAGTCAAT---ACC-ATTGGCTTGTA 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5