BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37235.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944181 jgi|Araly1|944181|scaffold_700410.1                        758    0.0  


> Ahg944181 jgi|Araly1|944181|scaffold_700410.1
Length=496

 Score =  758 bits (410),  Expect = 0.0
 Identities = 466/492 (95%), Gaps = 8/492 (2%)
 Strand=Plus/Plus

Query  58   GTTCAAGGAGATGGTAAGAACAACGGCGTCGTTTGGAACCAGCTCAAGCTTTGTTCTTCG  117
            ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||
Sbjct  11   GTTCAAGGAGATGGTTAG---AACGGCGTCGTTTGGAACCAGCTCAAGCTTTGTTCTTCG  67

Query  118  TCTCGGACAAACTCTGTTTTCCTCTGCTTCGCTTCTTTTCATGTGCTTTAACGATGACGA  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68   TCTCGGACAAACTCTGTTTTCCTCTGCTTCGCTTCTTTTCATGTGCTTTAACGATGACGA  127

Query  178  AGATTTCTACGCTTACACCACCTTCTGTTATCTAGTCACAGTCATGGGTTTAGTGACACC  237
            ||||||||| ||||||||  |||| |||||| ||||||||||||||||||||||||||||
Sbjct  128  AGATTTCTATGCTTACACTGCCTTTTGTTATTTAGTCACAGTCATGGGTTTAGTGACACC  187

Query  238  TTGGAGCGTGACGTTAGCCCTAATGGAAGCTTACTCAATCCTCGTaaaaaaaCTTCCTAT  297
            |||||||||||||||||||||||||||||||||||||||| || |  || ||||||||||
Sbjct  188  TTGGAGCGTGACGTTAGCCCTAATGGAAGCTTACTCAATCATCCTCCAACAACTTCCTAT  247

Query  298  GCAAGCAACAGTTATATCTGTCATCGTCGCTGGAGATTTTGTTTTGTCGTTTTTGTCATT  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  248  GCAAGCAACAGTTATATCTGTCATCGTCGCTGGAGATTTTGTTTTGTCGTTTTTGTCTTT  307

Query  358  GGGAGGTGCATGCTCGACGGCGAGCGTGGCCGTACTTTTGAT-GGACGCCGGAGAGAAGC  416
            ||||||||| |||||||||| |||||||||||||| |||||| || ||||||||||||||
Sbjct  308  GGGAGGTGCTTGCTCGACGGTGAGCGTGGCCGTACGTTTGATCGG-CGCCGGAGAGAAGC  366

Query  417  AATGTGATCGGTATAAG-CTATCGGCGACAATGGCGtttttgtcttcgtttctttcattt  475
            ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  367  AATGTGATCGGTATAAGTC-ATCGGCGACAATGGCGTTTTTGTCTTCGTTTCTTTCATTT  425

Query  476  gcttcaactttctttaatttttgtcttcttccttctctAATGTCTCACTAATTAGGATTT  535
            ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  426  GCTTCCACTTTATTTAATTTTCGTCTTCTTCCTTCTCTAATGTCTCACTAATTAG-ATTT  484

Query  536  CATTTCACCAGT  547
            ||||||||||||
Sbjct  485  CATTTCACCAGT  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5