BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37240.1 Length=699 Score E Sequences producing significant alignments: (Bits) Value Ahg490944 jgi|Araly1|490944|fgenesh2_kg.7__377__AT4G37240.1 1011 0.0 Ahg932367 jgi|Araly1|932367|scaffold_400355.1 315 4e-85 > Ahg490944 jgi|Araly1|490944|fgenesh2_kg.7__377__AT4G37240.1 Length=673 Score = 1011 bits (547), Expect = 0.0 Identities = 600/625 (96%), Gaps = 6/625 (1%) Strand=Plus/Plus Query 79 AATACATATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGAT 138 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 51 AATACAAATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTGGCGACGGCGAAGCTGAT 110 Query 139 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCT 198 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 111 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTTGGATACGTTTTGCT 170 Query 199 CAAGTATCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGTTGC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 171 CAAGTATCCGATGTGTTTTATCTGTAACTCCGACGATATGGACTTTGACGACGCCGTTGC 230 Query 259 CGCTATTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 318 ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 CGCCATTAGCGCCGATGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 290 Query 319 TTGGCTTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 378 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 291 TTGGCTTCGTCAGCCACTTAAAGCGGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 350 Query 379 TGCGCTCAT--GA-GAGGTGGTGGAGGAGGTTGTCGCCGGAAATGTGTCGAGCCTATCGT 435 ||||||||| || |||| || ||||||||||||||||||||||||||||| ||||| || Sbjct 351 TGCGCTCATGCGAGGAGGAGGAGGAGGAGGTTGTCGCCGGAAATGTGTCGATCCTATTGT 410 Query 436 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCAGGATCCGG 495 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 411 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCCGGCTCCGG 470 Query 496 GAGGAGGAAAGTGAGGAACGGTGATGGTGGTGGTAGTGTTAGTAGTAGCCGGAGGAGGAA 555 ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 471 GAGGAGGAAAGGGAGGAACGGTGACGGTGGTGGTAGTGTTAGCAGTAGCCGGAGGAGGAA 530 Query 556 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 590 Query 616 AAATTTGTGGGTTTAATTTGTGGATAGTGTAAATTATGTTGGGG-CCTATTAGTCATTTA 674 ||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||| Sbjct 591 AAATTTGGGGGTTTAATT-GTGGATAGTGTAA-TTATGTTGGGGGCCTATTAGTCATTTA 648 Query 675 ATGAAGATGCAATTTGCATATTGGC 699 ||||||| ||||||||||||||||| Sbjct 649 ATGAAGAAGCAATTTGCATATTGGC 673 > Ahg932367 jgi|Araly1|932367|scaffold_400355.1 Length=533 Score = 315 bits (170), Expect = 4e-85 Identities = 268/316 (85%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 86 ATGGGTATATGCAGCTCG-AGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGATCTTACA 144 ||||||||||| |||||| | ||| ||||| ||||||||||||||||||||||||||||| Sbjct 21 ATGGGTATATGTAGCTCGTA-CGACTCGACACAAGTCGCGACGGCGAAGCTGATCTTACA 79 Query 145 AGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCTCAAGTA 204 || || |||||||||||||| ||| ||| || ||||| || || || || | ||| | Sbjct 80 CGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTGGTTATGTGTTACAGAAGAA 139 Query 205 TCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGT-TGCCGCTA 263 |||||||||||| || || |||||||| ||||||||||||||| ||| || | |||| | Sbjct 140 TCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTGACAACGTTGTAT-CCGCCA 198 Query 264 TTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTGTTGGC 323 ||||||| ||||| ||| |||||||||||||| | ||||||||||||||||| | | || Sbjct 199 TTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTGCTCTTCCTCTAAGCTCGC 258 Query 324 TTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCGC 383 ||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 259 TTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCTC 318 Query 384 TCATGAGAGGTGGTGG 399 | |||||| ||||||| Sbjct 319 TAATGAGAAGTGGTGG 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25694846058 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5