BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37240.1
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490944 jgi|Araly1|490944|fgenesh2_kg.7__377__AT4G37240.1 1011 0.0
Ahg932367 jgi|Araly1|932367|scaffold_400355.1 315 4e-85
> Ahg490944 jgi|Araly1|490944|fgenesh2_kg.7__377__AT4G37240.1
Length=673
Score = 1011 bits (547), Expect = 0.0
Identities = 600/625 (96%), Gaps = 6/625 (1%)
Strand=Plus/Plus
Query 79 AATACATATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGAT 138
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 51 AATACAAATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTGGCGACGGCGAAGCTGAT 110
Query 139 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCT 198
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 111 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTTGGATACGTTTTGCT 170
Query 199 CAAGTATCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGTTGC 258
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 CAAGTATCCGATGTGTTTTATCTGTAACTCCGACGATATGGACTTTGACGACGCCGTTGC 230
Query 259 CGCTATTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 318
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CGCCATTAGCGCCGATGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 290
Query 319 TTGGCTTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 378
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 TTGGCTTCGTCAGCCACTTAAAGCGGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 350
Query 379 TGCGCTCAT--GA-GAGGTGGTGGAGGAGGTTGTCGCCGGAAATGTGTCGAGCCTATCGT 435
||||||||| || |||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 351 TGCGCTCATGCGAGGAGGAGGAGGAGGAGGTTGTCGCCGGAAATGTGTCGATCCTATTGT 410
Query 436 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCAGGATCCGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 411 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCCGGCTCCGG 470
Query 496 GAGGAGGAAAGTGAGGAACGGTGATGGTGGTGGTAGTGTTAGTAGTAGCCGGAGGAGGAA 555
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 471 GAGGAGGAAAGGGAGGAACGGTGACGGTGGTGGTAGTGTTAGCAGTAGCCGGAGGAGGAA 530
Query 556 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 590
Query 616 AAATTTGTGGGTTTAATTTGTGGATAGTGTAAATTATGTTGGGG-CCTATTAGTCATTTA 674
||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 591 AAATTTGGGGGTTTAATT-GTGGATAGTGTAA-TTATGTTGGGGGCCTATTAGTCATTTA 648
Query 675 ATGAAGATGCAATTTGCATATTGGC 699
||||||| |||||||||||||||||
Sbjct 649 ATGAAGAAGCAATTTGCATATTGGC 673
> Ahg932367 jgi|Araly1|932367|scaffold_400355.1
Length=533
Score = 315 bits (170), Expect = 4e-85
Identities = 268/316 (85%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 86 ATGGGTATATGCAGCTCG-AGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGATCTTACA 144
||||||||||| |||||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 21 ATGGGTATATGTAGCTCGTA-CGACTCGACACAAGTCGCGACGGCGAAGCTGATCTTACA 79
Query 145 AGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCTCAAGTA 204
|| || |||||||||||||| ||| ||| || ||||| || || || || | ||| |
Sbjct 80 CGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTGGTTATGTGTTACAGAAGAA 139
Query 205 TCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGT-TGCCGCTA 263
|||||||||||| || || |||||||| ||||||||||||||| ||| || | |||| |
Sbjct 140 TCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTGACAACGTTGTAT-CCGCCA 198
Query 264 TTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTGTTGGC 323
||||||| ||||| ||| |||||||||||||| | ||||||||||||||||| | | ||
Sbjct 199 TTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTGCTCTTCCTCTAAGCTCGC 258
Query 324 TTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCGC 383
||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 259 TTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCGTTAAAGCTAGCTCTGCTC 318
Query 384 TCATGAGAGGTGGTGG 399
| |||||| |||||||
Sbjct 319 TAATGAGAAGTGGTGG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5