BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37250.1
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944134 jgi|Araly1|944134|scaffold_700363.1 3727 0.0
Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231 1264 0.0
Ahg496872 jgi|Araly1|496872|fgenesh2_kg.8__2688__AT5G67280.1 246 6e-64
> Ahg944134 jgi|Araly1|944134|scaffold_700363.1
Length=2342
Score = 3727 bits (2018), Expect = 0.0
Identities = 2240/2347 (95%), Gaps = 16/2347 (1%)
Strand=Plus/Plus
Query 301 TAGTGTGATGATGCAATGAGAATGGAGTTGATTTCAGT-G-ATT-TTCTTCTTCTTTTGC 357
||||||||||| || |||| |||||||||||||||||| | || |||||||||||||||
Sbjct 6 TAGTGTGATGAAGCCATGAAAATGGAGTTGATTTCAGTGGTTTTCTTCTTCTTCTTTTGC 65
Query 358 TCTGTTTTGAGTTCCTCTGCTTTAAACTCTGATGGGTTGGTTTTGATGAAGTTTAAATCC 417
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 66 TCTGTTTTGAGTTCCTCTGGTTTAAACTCTGATGGATTGGTTTTGATGAAGTTCAAATCC 125
Query 418 TCTGTTCTTGTTGATCCTCTGTCTTTATTACAGACATGGAATTACAAACACGAAAGTCCA 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 126 TCTGTTCTTGTTGATCCTCTGTCTTTATTACAGACATGGAACTACAAACACGAAACTCCA 185
Query 478 TGTTCTTGGAGAGGAATCTCTTGTAATAACGATTCTAAAGTCTTAACTTTGTCTCTTCCC 537
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 186 TGTTATTGGAGAGGAATCTCTTGTAATAACGATTCTAAAGTCTTAACCTTGTCTCTTCCC 245
Query 538 AATTCTCAGCTTCTTGGTTCGATTCCTTCTGATTTGGGTTCTCTCTTAACACTTCAAAGT 597
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 246 AATTCTCAACTTCTTGGTTCGATTCCTTCTGATTTGGGTTCTCTCTTAACACTTAAAAGT 305
Query 598 CTCGATCTTTCCAATAATTCCTTCAATGGGCCATTACCGGTTTCTTTCTTCAACGCTAGA 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTCGATCTTTCCAACAATTCCTTCAATGGGCCATTACCGGTTTCTTTCTTCAACGCTAGA 365
Query 658 GAGCTTCGTTTCCTTGATCTCTCTAGTAACATGATCTCCGGCGAAATCCCTTCCGCAATT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAGCTTCGTTTCCTCGATCTCTCTAGTAACATGATCTCCGGCGAAATCCCTTCCGCAATT 425
Query 718 GGTGATCTTCACAATCTTCTAACCCTAAATCTCTCTGATAATGCCTTGGCGGGAAAGTTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGTGATCTTCACAATCTTCTAACCCTAAATCTCTCTGATAATGCCTTGGCGGGAAAGTTA 485
Query 778 CCTACAAATTTGGCGTCGTTGAGAAACTTAACGGTGGTTTCTTTGGAGAATAATTACTTT 837
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 486 CCTGCAAATTTGGCGTCATTGAGAAACCTAACGGTGGTTTCTTTGGAGAATAATTACTTT 545
Query 838 TCCGGCGAGATTCCCGGCGGTTGGAGAGTTGTTGAGTTCTTAGACCTGTCGTCGAATCTG 897
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 546 TCCGGCGAAATTCCCGGCGGTTGGAGAGTTGTTGAGTTCTTAGACCTATCGTCGAATCTG 605
Query 898 ATCAATGGCTCGCTTCCTCCGGATTTTGGCGGATATAGTCTCCAGTACTTAAATGTCTCG 957
|||||||||||||| || || |||||||||||| ||||||||| |||||| || ||||||
Sbjct 606 ATCAATGGCTCGCTACCACCTGATTTTGGCGGAGATAGTCTCCGGTACTTGAACGTCTCG 665
Query 958 TTTAACCAAATCTCCGGCGAAATTCCACCGGAGATCGGAGTCAATTTCCCAAGAAACGTC 1017
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 666 TTTAATCAAATCTCCGGCGAAATTCCACCGGAGATTGGAGTCAATTTCCCCAGAAACGTC 725
Query 1018 ACCGTTGATCTCTCCTTCAACAATTTAACCGGTCCAATCCCTGATTCTCCGGTTTTCTTA 1077
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 726 ACCGTTGATCTCTCCTTCAACAATTTAACCGGTCCAATACCAGATTCTCCGGTTTTCTTT 785
Query 1078 AACCAGGAATCAAATTTCTTTTCAGGAAACCCGGGTCTATGCGGTGAACCGACCCGAAAC 1137
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 786 AACCAGGAATCGAATTTCTTTTCAGGAAACCCGGGTCTATGCGGTGAACCAACCCGTAAC 845
Query 1138 CCGTGTCTTATCCCTTCCTCGCCGTCTATCGTCTCCGAA-GCCGACGTACCGACGTCTAC 1196
|||||||||||||||||||||||||| |||| |||| || |||||||| |||||||||||
Sbjct 846 CCGTGTCTTATCCCTTCCTCGCCGTCAATCGCCTCC-AACGCCGACGTGCCGACGTCTAC 904
Query 1197 ACCAGCAATCGCCGCAATACCGAACACAATCGGTTCAAACCCGGTTACCGATCCAAATTC 1256
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 905 ACCAGCAATCGCCGCCATACCGAACACAATCGGTTCAAACCCGGTTACCGATCCAAAATC 964
Query 1257 ACAACAAACCGACCCAAATCCCCGAACCGGGTTACGACCCGGAGTTATAATAGGGATCGT 1316
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 965 ACAACAAACCGACCCAAATGCCCGAACCGGGTTACGACCCGGAGTTATAATCGGAATCGT 1024
Query 1317 AGTCGGAGATATCGCTGGAATCGGAATCCTCGCCGTGATTTTCCTCTACATCTACAGATG 1376
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1025 AGTCGGAGATATCGCCGGAATCGGAATCCTCGCCGTAATTTTCCTCTACATCTACAGATG 1084
Query 1377 caagaagaacaagatagtggataacaacaacaacgacaagcaaagaacagaaacagacac 1436
||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||
Sbjct 1085 CAAGAAGAACAAGATTGTGGAT---AATAACAACGACAAGCAAAGAACAGAAACGGACAC 1141
Query 1437 aaTTACGTTATCAACATTTTCATCTTCTTCTTCTTCACCAGAAGAGTCAAGAAGATTCAG 1496
||||||| ||||| ||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1142 AATTACGCTATCACCATTTACTTCTTCTTCTTCTTCACCAGAAGAATCAAGAAGATTCAA 1201
Query 1497 GAAATGGTCGTGTCTACGAAAAGATCCTGAAACGACACCGTCtgaagaagaagatgaaga 1556
|||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |
Sbjct 1202 GAAATGGTCGTGTCTACGAAAAGATCCTGAAACGACGCCGTCT---GAAGAAGAT--A-A 1255
Query 1557 tgatgaagacgaagaaagCGGTTACAATGCAAATCAACGGTCAGGAGATAACAAGTTAGT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGATGAAGACGAAGAAAGCGGTTACAATGCAAATCAACGGTCAGGAGATAACAAGTTAGT 1315
Query 1617 GACCGTTGATGGAGAGAAGGAGATGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATAT 1676
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GACCGTTGATGGAGAGAAAGAGATGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATAT 1375
Query 1677 TTTAGGAGCCACAGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGTAGGGTTTT 1736
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1376 TTTAGGAGCCACTGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGAAGGGTTTT 1435
Query 1737 CGCGGTTCGTCGACTCGGTGAAAACGGTTT-ATCTCAGCGCCGGTTTAAGGATTTTGAGC 1795
|||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1436 CGCGGTTCGTCGGCTCGGTGAGAACGGTTTGA-ATCAGCGCCGGTTTAAGGATTTTGAGT 1494
Query 1796 CGCACATTCGAGCCATTGGGAAATTGGTTCACCCGAATTTGGTTAGACTTTGTGGGTTCT 1855
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CGCACATTCGAGCCATTGGCAAATTGGTTCACCCGAATTTGGTTAGACTTTGTGGGTTCT 1554
Query 1856 ATTGGGGTACCGACGAGAAACTAGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGTCA 1915
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATTGGGGTACCGACGAGAAATTGGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGTCA 1614
Query 1916 ACCCCCGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCGTGGGAAACTC 1975
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1615 ACCCCCGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCATGGGAAACTC 1674
Query 1976 GGCTCAAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCATG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GGCTCAAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCATG 1734
Query 2036 TGCATGGAAACTTGAAGCCTAGCAACATACTTTTGGGCCATGACATGGAACCCAAAATAG 2095
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1735 TGCATGGAAACTTGAAGCCTAGTAACATACTTTTGGGCCATGACATGGAGCCCAAAATAG 1794
Query 2096 GCGATTTCGGACTCGAAAGGCTTCTTACAGGCGAAACAAGCTACATTCGAGCTGGTGGAT 2155
|||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1795 GCGATTTCGGACTCGAGAGGCTTCTCACAGGCGAAACGAGCTACATCCGAGCTGGTGGAT 1854
Query 2156 CTTCTAGGATTTTCAGTAGTAAGCGTTACACAACTTCCTCGCGAGAATTCTCGTCTATCG 2215
||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1855 CTTCTCGGATTTTTAGTAGTAAGCGTTACACAACTTCATCGCGAGAATTCTCGTCTATGG 1914
Query 2216 GGCCTACACCAAGCCCGAGTCCGAGCTCGGTGGGGGCGATGTCACCCTACTGCGCACCAG 2275
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1915 GGCCTACACCAAGCCCGAGTCCGAGCTCGGTGGGGCCGATGTCACCCTACTGCGCACCAG 1974
Query 2276 AGTCTTTCCGAAGCCTAAAACCGAGTCCGAAATGGGACGTTTACGGCTTTGGAGTGATCC 2335
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1975 AGTCTTTCCGGAGCCTAAAACCGAGTCCGAAATGGGACGTTTACGGCTTTGGCGTGATCC 2034
Query 2336 TTCTCGAGCTTCTCACGGGAAAGATTGTGTCTGTTGAAGAGATTGTGCTAGGAAACGGAC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2035 TTCTCGAGCTTCTCACGGGAAAGATTGTGTCTGTTGAAGAGATTGTGCTAGGAAATGGAC 2094
Query 2396 TTACGGTTGAGGACGGGCACCGCGCAGTGAGAATGGCTGATGTGGCGATCCGCGGCGAGT 2455
| |||||||||||| ||||||||||||||||||||| ||||| | | |||||||||||||
Sbjct 2095 TGACGGTTGAGGACAGGCACCGCGCAGTGAGAATGGTTGATGCGACTATCCGCGGCGAGT 2154
Query 2456 TAGATGGCAAACAAGAGTTTTTACTCGATTGTTTCAAGTTAGGCTATAGCTGTGCGTCTC 2515
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 2155 TAGATGGCAAACAAGAGTTTTTACTCGAATGTTTCAAGTTAGGGTATAGCTGTGCATCTC 2214
Query 2516 CTGTTCCTCAAAAGAGGCCAACGATGAAAGAATCTTTGGCTGTTCTTGAAAGATTCCATC 2575
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CTGTGCCTCAAAAGAGGCCAACGATGAAAGAATCTTTGGCTGTTCTTGAAAGATTCCATC 2274
Query 2576 CTAACTCCTCTGTTATTAAGTCTTCATCGTTCCATTACGGACATTAATATCAGTTTGATA 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 CTAACTCCTCTGTTATTAAGTCTTCATCGTTCCATTACGGACATTAATATCAGTTTGATA 2334
Query 2636 CAACTAG 2642
|||||||
Sbjct 2335 CAACTAG 2341
> Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231
Length=2310
Score = 1264 bits (684), Expect = 0.0
Identities = 1835/2365 (78%), Gaps = 181/2365 (8%)
Strand=Plus/Plus
Query 343 TTCTTCTTCTTTTGCTCTG-TT-TTGAGTTCCTCTGCTTTAAACTCTGATGG-GTTGGTT 399
|||||||||| || ||||| || ||| |||||||||||||||||||||||| ||| |
Sbjct 31 TTCTTCTTCTCTT-CTCTGTTTCTTG-TTTCCTCTGCTTTAAACTCTGATGGAGTT-CTC 87
Query 400 TTGATGAAGTTT-AAATCCTCTGTTCTTGTTGATCCTCTGTCTTTATTACAGACATGGAA 458
|| ||| ||||| |||| |||||||||| |||||||||| |||||||||||| |||||||
Sbjct 88 TTAATG-AGTTTCAAATACTCTGTTCTTCTTGATCCTCTCTCTTTATTACAGTCATGGAA 146
Query 459 TTACAAACACGA-AAGTCCATGTTCTTGGAGAGGAATCTCT-TGTAATAACGATTCTAA- 515
||| | ||||| || ||| ||||||||| |||| | | | |||||||||||||| ||
Sbjct 147 CTACGACCACGACAA-TCCTTGTTCTTGGCGAGGTGTGT-TATGTAATAACGATTC-AAG 203
Query 516 AG-TCTTAACTTTGTCTCTTCCCAATTCTCAGCTTC-TTGGTTCGATTCCTTCTGATTTG 573
|| | || ||||| ||||| || || ||| | | || |||||||||||||||| ||| ||
Sbjct 204 AGTTGTT-ACTTTATCTCTACCAAACTCT-AACCTCGTTGGTTCGATTCCTTCCGATCTG 261
Query 574 GG-TT-CTCTCTTAACACTTCAAAGTCTCGATCTTTCCAATAATTC-CTTCAATGGGCCA 630
|| || ||| | ||| ||||||||||| |||||||||| ||||| | |||||||| ||
Sbjct 262 GGTTTCCTC-CAAAAC-CTTCAAAGTCTTAATCTTTCCAACAATTCAC-TCAATGGGTCA 318
Query 631 TTACCGGTT-TCTTTCTTCAACG-CTAGAGAGCTTC-GTTTCCTTGATCTCTCTAGTAAC 687
||||||||| ||| ||| || | | | |||| | |||| |||||| | || | |||
Sbjct 319 TTACCGGTTGAGTTT-TTCGCCGCCGATA-AGCTCCGGTTT-CTTGATTTATCAAACAAC 375
Query 688 ATGATCTCCGGCGAAATCCCTTCCG-CAATTGGTGATCTT-CACAATCTTCTA-ACCCTA 744
||||||||||||| ||||| | | |||| || ||| || ||||| | || | || ||
Sbjct 376 TTGATCTCCGGCGAGATCCC-TGTGTCAATCGGAGAT-TTGCACAA-CCTCCAGACGTTA 432
Query 745 AATCTCTCTGATAATGCCTTGGCGGGAAAGTTACCTACAAATTTGGCGTC-GTTGAGAAA 803
|||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||| |||
Sbjct 433 AATCTCTCCGATAACATCTTTACCGGAAAATTACCAACCAATTTAGCGTCTCTTG-GAAG 491
Query 804 CTTAACG-GTGGTTTCTTTGGAGAATAATTACTTTTCCGGCGAGATT-CC--CGGCGGTT 859
||||| | | ||||||| || |||| || ||||| ||||||||| || || |||||| |
Sbjct 492 CTTAA-GAGAGGTTTCTCTGAAGAACAACTACTTCTCCGGCGAGTTTCCCGGCGGCGGAT 550
Query 860 GGAGAGT-TGTTGAG-TTCTTAGACCTGTCGTCGAATCTGATCAATGGCTCGCTTCCTCC 917
||||| | ||| || ||||| ||| | || |||||||| |||||||| || || || ||
Sbjct 551 GGAGA-TCGGTTCAGTTTCTT-GACATTTCCTCGAATCTAATCAATGGATCACTCCCACC 608
Query 918 GGATTT-TGGC-G-GATATAGTCTCCAGTACTTAAATGTCTCGTTTAACCAAATCTCCGG 974
||||| | | | |||| | ||||| |||| | |||||||||| |||||||||||||||
Sbjct 609 TGATTTCT-CCAGCGATA-A-TCTCCGGTACCTGAATGTCTCGTATAACCAAATCTCCGG 665
Query 975 CGAAATTCCACCGGA-GATCGGAGTC-AATTTCC-CAAGAAACGTC-ACCGTTGATCTCT 1030
||| || || ||| | | |||| | | ||||| | | ||||| | ||||||||| |||
Sbjct 666 CGAGATCCCTCCGAATG-TCGGTGCCGGTTTTCCTC-A-AAACG-CTACCGTTGATTTCT 721
Query 1031 CCTTCAACAATTTAACCGGTCCAATCCCTGATTCTCCGGTTTT-CTTAAACCAGGAATCA 1089
|||||||||||||||||||| ||||||| |||||||||||||| ||| |||||| ||||
Sbjct 722 CCTTCAACAATTTAACCGGTTCAATCCCAGATTCTCCGGTTTTCCTT-AACCAGAAATC- 779
Query 1090 AATTTC-TTTTCAGGAAACCCGGGTCTATGCGGTGAACCGACCCGAAACCCGTGTCTTAT 1148
|||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 780 AATTTCGTTTTCCGGAAACCCGGGTTTATGCGGTGGTCCGACCCGAAACCCGTGTCCCAT 839
Query 1149 CCCTTCCTCGCC-GTCTATCGTCTCCGAAGCCGACG-T--ACCGACGTCTACACCAGCAA 1204
|||||||| || | | | |||||||| |||| || | ||| |||||||| || |||
Sbjct 840 TCCTTCCTCTCCAG-CCACCGTCTCCGGCGCCGTCGCTCCACCTACGTCTACGCCTGCAC 898
Query 1205 TCGCCGCAATACCGAACA-CAATCGGTTCAAACCCGGTTACCGATCCAAATTCACAACAA 1263
| || || ||||| || | ||||||| ||||| | | ||||| || |||||
Sbjct 899 TAGCAGCCATACC-AAAATCAATCGGGTCAAATTCAGAAACCGAACC----GGACAAC-- 951
Query 1264 ACCGACCCAAATCCCCGAACCGGGTTACGACCCGGAGTTATAATAGGGATCGTAGTCGGA 1323
| || ||||||| ||||| || ||| |||| ||||||||||| || ||| ||||||||
Sbjct 952 A---ACTCAAATCCTCGAACAGGATTAAGACCAGGAGTTATAATCGGAATCATAGTCGGA 1008
Query 1324 GATATCGCTGGAATCGGAATCCTCGC-CGTGATTTTCCTCTACATCTACAGATGcaagaa 1382
|||||||| ||||||||||||||||| | | || ||||||||| | |||| || ||||||
Sbjct 1009 GATATCGCCGGAATCGGAATCCTCGCTC-TTATCTTCCTCTACGTTTACAAATACAAGAA 1067
Query 1383 gaacaagatagtggataacaacaac-aacgacaag-c-a-aagaaca-gaa---acagac 1434
|||||| | ||||| || || ||| | | | ||| | | ||| || ||| | ||||
Sbjct 1068 GAACAAAACCGTGGAGAAGAAGAACGATC-A-AAGTCTAGAAGCTCACGAAGCTAAAGAC 1125
Query 1435 acaa-TTACGTTATCA--A-CAT--T-TTC-A-T-CTTCTTCTTCTTCACCAGAAGAGTC 1484
|||| || |||||||| | ||| | | | | | |||||||| ||||||||| | ||
Sbjct 1126 ACAACTT-CGTTATCACCATCATCATCAACAACTACATCTTCTTCATCACCAGAACAATC 1184
Query 1485 AAGAAGATTCAGG-AAATGGTCGTGTCTACGAAAAG-ATCCTGAAACGACACCGTCtgaa 1542
||| |||||| || |||||||| ||||| || ||| || | || || |||| ||||
Sbjct 1185 AAGTAGATTC-GGAAAATGGTCATGTCTCCG-TAAGAAT-C---AA-GAAACCG-ATGAA 1236
Query 1543 ga-agaagatgaagatgatgaaga-cgaa-ga--aagCG-GTTACAATGCA-AATCAACG 1595
| ||||| ||||| || ||| | | || || | | | ||| | | | || |||
Sbjct 1237 -ACCGAAGAAGAAGACGACGAAAATC-AACGATCAGGAGAGTTTGGA-G-AGAA-CAA-- 1289
Query 1596 GTCAGGAGATAACAAGTTAGTGACCGTTGAT---GGAGAG-AAGGAGATGGAGATTGAGA 1651
| ||| | || ||||| ||| ||||| |||||| ||| | || || |||| |
Sbjct 1290 GAAAGG-G---AC--TTTAGTAACCATTGATGGAGGAGAGAAAGAACTTGAAG-TTGAAA 1342
Query 1652 CTCTGCTTAAGGCTTCAGCTTATATTTTAGGAGCCACAGGTTCGAGTATAATGTATAAAG 1711
|| ||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct 1343 CTTTGCTTAAAGCTTCTGCTTACATTTTGGGAGCCACCGGTTCGAGTATAATGTA-CAAG 1401
Query 1712 -CCGTTCTTGAAGACGGTAGGGTT-TTCGCGGTTCGTCGACTCGGTGAAAACGGTTT-A- 1767
| |||||||| || || | |||| || ||||||||||| | ||||| |||||||| |
Sbjct 1402 ACGGTTCTTGAGGATGGGACGGTTCTT-GCGGTTCGTCGGTTAGGTGAGAACGGTTTAAG 1460
Query 1768 TC-TCAGCGCCGGTTTAAGGATTTTGAGCCGCACATTCGAGCCATTGGGAAATTGGTTCA 1826
|| || |||||||||||||| |||||| | || |||||||| ||||| ||| |||||||
Sbjct 1461 TCAACAACGCCGGTTTAAGGACTTTGAGGCACATATTCGAGCTATTGGTAAACTGGTTCA 1520
Query 1827 CCCGAATTTGGTTAGACTTTGTGGGTTCTATTGGGGTACCGACGAGAAACTAGTCATTTA 1886
||||||||||||| | || |||| ||||||||||| |||||||||||| | ||||||||
Sbjct 1521 CCCGAATTTGGTTCGTCTCCGTGGATTCTATTGGGGCACCGACGAGAAATTGGTCATTTA 1580
Query 1887 CGATTTTGTCCCTAACGGCAGCCTCGTCAACCCCCGTTACCGAAAAGGAGGAGGGTCTTC 1946
||||||||||||||||||||| ||||||||| |||||||| | |||||||| | || ||
Sbjct 1581 CGATTTTGTCCCTAACGGCAGTCTCGTCAACGCCCGTTACAGGAAAGGAGG-G--TCGTC 1637
Query 1947 TTCACCGTATCACCTACCGTGGGAAACTCGGCTCAAGATAGC-AAAGGGCATTG-CACGT 2004
| | || || |||| ||||| ||||||||||||||||| ||||| ||| | |||
Sbjct 1638 G-C-C-GTGCCATTTACCATGGGAGACTCGGCTCAAGATAGCGAAAGGT--TTGGCTCGT 1692
Query 2005 GGGCTGGCTTATCTCCACGAGAAGAAGCATGTGCATGGAAACTTGAAGCCTAGCAACATA 2064
||||| ||||| |||||||| ||||| |||||||| || |||||||| ||||| ||||||
Sbjct 1693 GGGCTTGCTTACCTCCACGACAAGAAACATGTGCACGGTAACTTGAAACCTAGTAACATA 1752
Query 2065 CTTTTGGGCCATGACATGGAACCCAAAATAGGCGATTTCGGACTCGAAAGGCTTCTTACA 2124
||||||||||| || ||||| ||||| || |||||||| || |||||||||||||| |
Sbjct 1753 CTTTTGGGCCAAGATATGGAGCCCAAGATCGGCGATTTTGGGCTCGAAAGGCTTCTCGCC 1812
Query 2125 GGCGAAACAAGCTACATTCGAGCTGGTGGATCTTCTAGGATTTTCAGTAGTAAGCG-TTA 2183
|| || |||||||| | |||||| ||||||| ||| ||||||||||||| ||| | ||
Sbjct 1813 GGAGATACAAGCTATAACCGAGCTAGTGGATCATCTCGGATTTTCAGTAGCAAGAGATTG 1872
Query 2184 CACAACTTCCTCGCGAGAATTCTCG-TCTATCGGGCCTACACCAAGCCCGAGTCCGAGCT 2242
||| | |||||||| ||||| | | || |||||||| ||||| ||||| ||||| ||||
Sbjct 1873 -ACAGCGTCCTCGCGTGAATT-TGGATCGATCGGGCCCACACCGAGCCCAAGTCCAAGCT 1930
Query 2243 CGGTGGGGGCGATGTCACCCTACTGCGCACCAGAGTCTTTCCG-AAGCCTAAAACCGAGT 2301
| || ||| | || || || || |||||||| ||||| |||| || | | ||||| |
Sbjct 1931 CCGTTGGGCCTATATCTCCATATTGCGCACCCGAGTCGCTCCGCAATC-TCAAACCAAAC 1989
Query 2302 CCGAAATGGGACGT-TTACGGCTTTGGAGTGATCCTTCTCGAGCTTCTCACGGGAAAGAT 2360
|| |||||||| || || || |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 1990 CCAAAATGGGATGTGTTTGGG-TTTGGAGTGATCCTCCTTGAGCTGCTCACAGGAAAAAT 2048
Query 2361 TGTGTCTGTT-GAAGAGATTGTGCTAGGAAACGGACTT-ACGGTTGAGGACGGGCACCGC 2418
|||||| | | || ||| | | | ||||||| || || ||||| || |||||| ||||
Sbjct 2049 TGTGTC-GATAGACGAGGTCGGGGTAGGAAATGGG-TTGACGGTAGAAGACGGGAACCGG 2106
Query 2419 GCAG-TGAGAATGGCTGATGTGGCGATCCGCGGC-GAGTTAGATGGCAAACAAGAGTTTT 2476
|| | ||| |||||||||||| ||||| ||| | || || || |||||| | || ||||
Sbjct 2107 GC-GCTGATAATGGCTGATGTAGCGATTCGCT-CTGAATTGGAAGGCAAAGAGGACTTTT 2164
Query 2477 TACTCGAT-TGTTTCAAGTTAGGCTATAGCTGTGCGTCTCCTGTTCCTCAAAAGAGGCCA 2535
|||| | | ||||||||| || ||||| ||||| |||| ||||| |||||||| ||
Sbjct 2165 TACTTGGCCT-TTTCAAGTTGGGATATAGTTGTGCATCTCAAGTTCCACAAAAGAGACCG 2223
Query 2536 ACGATGAAAGAATCTTTGGCT-GT-TCTTGAAAGATTCCATCCTAACTCCTCTGTTATTA 2593
|| |||||||| | || | | || | |||||||||||| | || ||| || | || |
Sbjct 2224 ACCATGAAAGAGGCATTAG-TAGTGT-TTGAAAGATTCCCTATTAGCTCATCGGCTA--A 2279
Query 2594 AGTCTTCATCGTTCCATTACGGACA 2618
|||| |||||| ||||||||||||
Sbjct 2280 -GTCTCCATCGTACCATTACGGACA 2303
> Ahg496872 jgi|Araly1|496872|fgenesh2_kg.8__2688__AT5G67280.1
Length=2467
Score = 246 bits (133), Expect = 6e-64
Identities = 410/539 (76%), Gaps = 37/539 (7%)
Strand=Plus/Plus
Query 1629 AGAGAAGGAGA-TGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATATTTTAGGAGCCA 1687
|||||| || | | || || || || || || || ||||||||||||||||| |||||||
Sbjct 1387 AGAGAAAGA-ACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATATTTTGGGAGCCA 1445
Query 1688 CAGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGTAGGGTTTTCGCGGTTCGTC 1747
| |||||||| |||||||||||||| |||||| ||||||| | || | | |||||||| |
Sbjct 1446 CCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGTGGCGGTTCGAC 1505
Query 1748 G-ACTCGGTGAAAACGGTTTATCTCAGCGCCGGTTTAAG-GATTTTG-AGCCGCACATTC 1804
| | | | |||| ||| | | | || ||||||| || ||||| | || | || |||
Sbjct 1506 GTA-TAGCTGAATGCGG--T-T-T-AG-ACCGGTTT-AGAGATTTCGAAG-CTCAGGTTC 1556
Query 1805 GAGCCATTGG-GAAATTGGTTCACCCGAATTTGGTTA-GACTTTGTGGGTTCTATTGGGG 1862
||||| ||| || || | || | || ||| || || || | || |||||||||||
Sbjct 1557 GAGCC-GTGGCTAAGTTAATACATCAAAACCTGG-TACGAATTCGAGGTTTCTATTGGGG 1614
Query 1863 TA-CCGACGAGAAACTAGTCATTTACGATTTTGTCCCTAACGGCAGCCTCG-TCAACCCC 1920
| |||||||||| || |||||||||||||||||||||||||||||||||| | || ||
Sbjct 1615 -AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCT-AATGCC 1672
Query 1921 CGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCGTGGGAAACTCGGCTC 1980
|||||||| |||| || | || ||| | | | ||| |||| |||||| ||||||||
Sbjct 1673 CGTTACCGGAAAGT-GG-GC-TCCTCT-C-CT-TGTCATTTACCTTGGGAAGCTCGGCTC 1726
Query 1981 AAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCATGTGCAT 2040
||||||||||| || || || |||||||| | ||| | ||||| |||||| | ||||||
Sbjct 1727 AAGATAGCAAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCAT 1786
Query 2041 GGAAACTTGAAGCCTAGCAACATACTTTTGGGCC-ATGACATGGAACCCAAAATAGGCGA 2099
|| ||| | |||||||| || || ||||||||| | || ||||| || ||| | | |||
Sbjct 1787 GGTAACCTCAAGCCTAGTAATATCCTTTTGGGCTTA-GATATGGAGCCTAAAGTTGCCGA 1845
Query 2100 TTTCGGACTCGA-AAGGCTTCTT-ACAGGCGAAACAAGCTACATTCGAGCTGGTGGATC 2156
|||||| || || ||| ||| || | ||||| | || || | |||||||||||||
Sbjct 1846 TTTCGGGCTTGAGAAG-CTT-TTGATTGGCGACATGAGTTATA---GAGCTGGTGGATC 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104176820075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5