BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37270.1
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490893 jgi|Araly1|490893|fgenesh2_kg.7__326__AT4G37270.1 4002 0.0
Ahg343887 jgi|Araly1|343887|fgenesh1_pg.C_scaffold_4000229 1339 0.0
> Ahg490893 jgi|Araly1|490893|fgenesh2_kg.7__326__AT4G37270.1
Length=3463
Score = 4002 bits (2167), Expect = 0.0
Identities = 2438/2568 (95%), Gaps = 22/2568 (1%)
Strand=Plus/Plus
Query 31 TTCATCTTTTTCACCAAGACGAACGACTCTTACACGCAGAGTTCGCGAGATCAGAATCAA 90
||| ||||| ||||| | | | |||||||| | |||||||||||| ||||||||||||||
Sbjct 1 TTCTTCTTTGTCACC-A-A-G-ACGACTCTAATACGCAGAGTTCGTGAGATCAGAATCAA 56
Query 91 TGGTGGCATGAAAAACGACGCTT--GAGCTCAAATTCGTCGACCATGGAACCTGCAACTC 148
||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |||
Sbjct 57 TGGTGGCATGAAAAACGACGCTTGAGAGCTCCAATTCGTCGATTATGGAACCTGCAGCTC 116
Query 149 TTACTCGTTCTTCCTCTCTTACTAGATTCCCTTATCGTCGTGGTTTATCCACTCTCCGAC 208
||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||
Sbjct 117 TTACTCGTTCTTCCTCTCTCACTAGATTCCCTTATCGTCGCGGTTTAGCTACTCTCCGAC 176
Query 209 TCGCTCGAGTCAACTCGTTCTCAATTCTTCCACCTAAAACTCTTCTCCGTC-AAAA--AC 265
||||||||||||||||||||||| ||||||||||||| |||||||||| || |||| |
Sbjct 177 TCGCTCGAGTCAACTCGTTCTCAGTTCTTCCACCTAAGACTCTTCTCCATCGAAAACCTC 236
Query 266 -CGCT-TC-GTATCTCTGCTTCCCTTAATCTTCCACCACGGTCGATTCGTCTACGTGCTG 322
| || || ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 TCCCTCTCTCTATCTCTGCCTCCCTTAGTCTTCCACCACGGTCGATTCGTCTACGTGCTG 296
Query 323 TCGAAgatcaccatcacgatcatcatcacgatgacgagcaagatcat---cacaacca-c 378
||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||| |
Sbjct 297 TCGAAGACCACCATCACGATCATCATCATGATGACGAGCAAGATCATGACCACCACCATC 356
Query 379 --catcatcatcaccatcaacacgGATGCTGTTCTGTGGAATTGAAAGCGGAGAGTAAGC 436
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 ATCATCATCATCACCATCAACACGGATGCTGTTCCGTGGAATTGAAAGCGGAGAGTAAGC 416
Query 437 CTCAGAAGATGTTGTTCGGATTCGCTAAAGCTATCGGATGGGTTAGATTGGCCAATTACC 496
|||||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 417 CTCAGAAGGTGTTGTTCGGATTCGCTAAAGCCGTTGGATGGGTTCGATTGGCCAATTACC 476
Query 497 TCAGAGAGCATCTTCATCTTTGCTGCTCCGCCGCTGCAATGTTCCTCGCTGCCGCCGTC- 555
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 477 TCAGGGAGCATCTTCATCTTTGCTGCTCCGCCGCCGCAATGTTCCTCGCTGCCGCCG-CG 535
Query 556 TGTCCTTACCTTGCTCCTGAACCTTACATTAAGTCTCTTCAGAACGCATTCATGATTGTT 615
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGTCCTTACCTTGCTCCTAAACCTTACATTAAGTCTCTTCAGAACGCATTCATGATTGTT 595
Query 616 GGTTTTCCTCTTGTTGGAGTTTCAGCATCTCTCGACGCACTTATGGATATAGCTGGAGGA 675
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 596 GGTTTCCCTCTTGTTGGAGTTTCAGCGTCTCTCGACGCACTTATGGATATAGCAGGAGGA 655
Query 676 AAAGTGAACATCCATGTCTTGATGGCACTTGCGGCTTTTGCATCTGTGTTTATGGGAAAT 735
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 AAAGTGAACATTCATGTATTGATGGCACTTGCGGCTTTTGCATCTGTGTTTATGGGGAAT 715
Query 736 GCTTTGGAAGGAGGATTGCTTCTAGCTATGTTCAATCTTGCTCATATTGCTGAGGAGTTC 795
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 716 GCTTTGGAAGGAGGATTACTTCTAGCCATGTTCAATCTTGCTCATATTGCTGAGGAGTTC 775
Query 796 TTTACTAGTCGATCAATGGTGGATGTCAAAGAATTGAAAGAGAGTAATCCAGATTCTGCA 855
|| ||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct 776 TTCACTAGTCGATCAATGGTGGATGTGAAAGAGTTAAAAGAGAGTAATCCGGATTCTGCA 835
Query 856 TTGTTGATCGAAGTACACAATGGCAATGTTCCAAATATATCTGATTTGTCATACAAAAGC 915
||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 836 CTGTTGATCGAAGTACTCAATGGCAATGTTCCAAATATTTCTGATTTGTCCTACAAAAGC 895
Query 916 GTTCCTGTGCACAGCGTAGAAGTTGGATCCTATGTTTTGGTTGGAACTGGTGAGATTGTG 975
|||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 896 GTTCCTGTACACAGTGTAGAAGTTGGATCCTATATATTGGTTGGAACTGGTGAGATTGTG 955
Query 976 CCTGTAGATTGCGAAGTCTATCAAGGTAGTGCTACAATTACAATTGAGCACTTGACTGGG 1035
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 956 CCTGTAGATTGCGAAGTCTACCAAGGTAGTGCTACAATAACCATTGAGCACTTGACTGGG 1015
Query 1036 GAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAAGAAATTTG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAAGAAATTTG 1075
Query 1096 GATGGCAGAATGATTGTAAAGGCTACAAAGGCATGGAATGATTCGACGCTTAACAAGATT 1155
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1076 GATGGCAGAATGATTGTGAAGGCGACAAAGGCATGGAATGATTCGACGCTTAACAAGATT 1135
Query 1156 GTACAGCTGACCGAGGAAGCACATTCTAATAAACCCAAACTTCAGAGATGGCTGGATGAG 1215
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1136 GTACAGCTGACCGAGGAAGCACATTCTAAAAAACCCAAACTTCAGAGATGGCTGGATGAG 1195
Query 1216 TTTGGCGAGAATTACAGCAAGGTTGTCGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGT 1275
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 TTTGGCGAGAATTACAGCAAGGTTGTAGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGT 1255
Query 1276 CCATTTTTGTTCAAGTGGCCTTTTCTCAGCACCGCAGCATGTAGAGGATCTGTTTACAGA 1335
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1256 CCATTTTTGTTCAAGTGGCCTTTTCTCAGCACCGCAGCATGCAGAGGATCTGTTTACAGA 1315
Query 1336 GCATTGGGACTTATGGTGGCCGCATCACCATGTGCTCTGGCCGTAGCTCCATTGGCTTAT 1395
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 GCATTGGGACTTATGGTGGCCGCATCACCATGTGCTTTGGCCGTAGCTCCATTGGCTTAT 1375
Query 1396 GCTACTGCTATTAGTTCCTGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTTCTA 1455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1376 GCTACTGCTATTAGTTCCTGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTCCTA 1435
Query 1456 GATGCTCTTGCGTCTTGCCATACTATTGCTTTTGACAAAACTGGTACCTTAACAACCGGC 1515
|||||||| || |||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 1436 GATGCTCTCGCATCTTGCCATACTGTTGCTTTTGACAAAACCGGGACCTTAACAACCGGC 1495
Query 1516 GGCCTTACTTGTAAAGCAATTGAACCCATTTATGGGCACCAAGGAGGAACTAATTCAAGT 1575
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 GGCCTTACTTGCAAAGCAATTGAACCCATTTATGGGCACCAAGGAGGAAATAATTCAAGT 1555
Query 1576 GTAATAACTTGCTGCATTCCAAATTGTGAAAAAGAAGCTCTTGCAGTTGCGGCTGCCATG 1635
|||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1556 GTAACAACTTGCTGCATTCCAAATTGTGAAAAAGAAGCTCTTGCTGTAGCGGCTGCCATG 1615
Query 1636 GAGAAGGGCACCACGCATCCTATTGGAAGAGCTGTTGTAGATCACAGTGTGGGTAAGGAT 1695
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1616 GAGAAGGGCACCACACATCCTATTGGAAGAGCTGTTGTAGATCACAGTGTGGGTAAAGAC 1675
Query 1696 CTTCCTTCTATTTTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCTACT 1755
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1676 CTTCCTTCTATTTTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCAACT 1735
Query 1756 GTCAACGGTGTTAAGACAGTAGCTGAAGAGAGTAGATTACGAAAAGCATCACTTGGTTCT 1815
|| ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1736 GTAAACGGTGCCAAGTCGGTAGCTGAAGAAAGTAGATTACGAAAAGCATCACTTGGTTCG 1795
Query 1816 ATAGAGTTCATTACCTCACTTTTCAAATCTGAAGATGAATCTAAACAGATCAAGGATGCT 1875
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1796 ATAGAGTTCATTACCTCGCTTTTCAAATCTGAAGATGAGTCTAAACAGATCAAGGATGCT 1855
Query 1876 GTAAACGCGTCTTCGTACGGAAAGGACTTCGTTCATGCTGCTCTTTCTGTTGATCAAAAG 1935
|||||||| |||| |||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 1856 GTAAACGCCTCTTTGTACGGGAATGACTTTGTTCATGCAGCTCTTTCTGTTGATCAAAAG 1915
Query 1936 GTAACATTGATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAA 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GTAACATTGATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAA 1975
Query 1996 CTTAAAAGCTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGACCATGATTCAAGTGCT 2055
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1976 CTTAAAAGCTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGATCATGATTCAAGTGCT 2035
Query 2056 TGGAGAGTTGCAAACGCAGTGGGTATTACCGAAGTCTACTGCAACCTAAAGCCAGAGGAT 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TGGAGAGTTGCAAACGCAGTGGGTATTACCGAAGTCTACTGCAACCTAAAGCCAGAGGAT 2095
Query 2116 AAGTTAAATCATGTAAAGAACAT-TGCTCGGGAAGCAGGTGGAGGTTTAATTATGGTAGG 2174
|| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2096 AAATTAAATCATGTAAAGAACATCT-CTCGGGAAGCAGGTGGAGGTTTAATTATGGTAGG 2154
Query 2175 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTGGGGATTGTTCTTGCTCA 2234
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2155 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTTGGGATTGTTCTTGCTCA 2214
Query 2235 ACGAGCGAGTGCCACTGCGATTGCCGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2294
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2215 ACGAGCGAGTGCCACCGCGATTGCTGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2274
Query 2295 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2334
Query 2355 AGCTCTTGCATTAACATCGATATTCTTGGCCGCTCTTCCTTCAGTTTTAGGGTTTGTCCC 2414
||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||| ||
Sbjct 2335 AGCTCTTGCGTTAACATCGATATTCGTGGCTGCTCTTCCATCAGTTTTAGGGTTTGTTCC 2394
Query 2415 ATTGTGGTTGACGGTACTTCTACATGAAGGCGGGACTCTTCTGGTGTGTCTAAACTCAGT 2474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2395 ATTGTGGTTGACGGTACTTCTACATGAAGGCGGGACTCTTCTCGTGTGTCTAAACTCAGT 2454
Query 2475 ACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTTCATCTAATCAACAA 2534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2455 ACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTACATCTAATCAACAA 2514
Query 2535 GTTACGCTCACAAGAACCAACCAGTAGCAGCAGCAACAGTTTAAGCTC 2582
|||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2515 GTTAAGCTCACAAGAACCCACCAGTATCAGCAGCAACAGTTTAAGCTC 2562
Score = 89.8 bits (48), Expect = 1e-16
Identities = 77/89 (87%), Gaps = 10/89 (11%)
Strand=Plus/Plus
Query 2730 TTATATTTACTACTTTTAGTTTATGTTTG-----T---TTCCTCGTAACAAACCCATAGA 2781
||||||||||||||| | ||||||||||| | ||||||||||||||||||||||
Sbjct 2658 TTATATTTACTACTTGTGGTTTATGTTTGCTTCCTCCGTTCCTCGTAACAAACCCATAGA 2717
Query 2782 AT--AAAAGTTTGAGAAGTGTTTTTGACT 2808
|| |||||||||||||||||||||||||
Sbjct 2718 ATAAAAAAGTTTGAGAAGTGTTTTTGACT 2746
> Ahg343887 jgi|Araly1|343887|fgenesh1_pg.C_scaffold_4000229
Length=2466
Score = 1339 bits (725), Expect = 0.0
Identities = 1203/1432 (84%), Gaps = 40/1432 (3%)
Strand=Plus/Plus
Query 1115 AGGCTACAAAGGCATGGAATGATTCGACGCTTAACAAGATTGTACAGCTGACCGAGGAAG 1174
||||||||||||| |||||||| ||||| |||||||||||| |||| |||| |||||||
Sbjct 995 AGGCTACAAAGGCGTGGAATGAGTCGACACTTAACAAGATTCTACAATTGACTGAGGAAG 1054
Query 1175 CACATTCTAATAAACCCAAACTTCAGAGATGGCTGGATGAGTTTGGCGAGAATTACAGCA 1234
|||| |||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||
Sbjct 1055 CACACTCTAATAAACCCAAACTTGAGAGATGGCTTTATGAGTTTGGTGAGATTTATAGCA 1114
Query 1235 AGGTTGTCGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGTCCATTTTTGTTCAAGTGGC 1294
|||| || |||||||||||| |||| ||||||||||| ||||| || |||||||||| ||
Sbjct 1115 AGGTGGTGGTTGTTTTGTCAGTTGCTATTGCCTTCCTTGGTCCGTTCTTGTTCAAGTTGC 1174
Query 1295 CTTTTCTCAGCACCGCAGCATGTAGAGGATCTGTTTACAGAGCATTGGGACTTATGGTGG 1354
| ||||| | ||| |||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1175 CGGTTCTCGGAACCACAGCATGTAGAGGATCAGTTTACAGAGCATTGGGATTTCTGGTGG 1234
Query 1355 CCGCATCACCATGTG-CTCTGGCCGTAGCTCCATTGGCTTATGCTACTGCTATTAGTTCC 1413
| || ||||| |||| || |||| || ||||||||||||||||||||||| || |||||
Sbjct 1235 CGGCGTCACCGTGTGCCT-TGGCAGTTGCTCCATTGGCTTATGCTACTGCAATAAGTTCT 1293
Query 1414 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTTCTAGATGCTCTTGCGTCTTGC 1473
||||||||||||||||||||||||||||||| || || || |||||||| || |||||
Sbjct 1294 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGGGCAAGTACTGGATGCTCTAGCTTCTTGT 1353
Query 1474 CATACTATTGCTTTTGACAAAACTGGTACCTTAACAACCGGCGGCCTTACTTGTAAAGCA 1533
|||||||||| |||||| ||||| || |||||||||||||| |||||||| || ||||||
Sbjct 1354 CATACTATTGGTTTTGATAAAACCGGGACCTTAACAACCGGAGGCCTTACATGCAAAGCA 1413
Query 1534 ATTGAACCCATTTATGGGCA-C--CAAGGAGGAACTAATTCAAGTGTAATAAC-TTGCTG 1589
|||||||||||||||||||| | |||| ||||| |||| |||||||| | | ||| ||
Sbjct 1414 ATTGAACCCATTTATGGGCATCATCAAGAAGGAAATAATGAAAGTGTAA-ATCCTTGTTG 1472
Query 1590 CATTCCAAATTGTGAAAAAGAAGCTCTT-GCAGTTGCGGCTGCCATGGAGAAGGGCACCA 1648
|| |||||||||||||| ||||| || || || || ||||| |||||||| || ||||
Sbjct 1473 TATGCCAAATTGTGAAAATGAAGCA-TTAGCTGTAGCAGCTGCTATGGAGAAAGGTACCA 1531
Query 1649 CGCATCCTATTGGAAGAGCTGTTGTAGATCACAGTGT-GGGTAAGGATCTTCCTTCTATT 1707
| ||||||||||||||||| | || || |||||||| ||| ||||| || |||||| ||
Sbjct 1532 CACATCCTATTGGAAGAGCCATGGTTGACCACAGTGTTGGG-AAGGACCTCCCTTCTGTT 1590
Query 1708 TTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCTACTGTCAACGGTGTT 1767
| |||||||||||| || |||||||| |||||||||||| |||||||||| ||| || ||
Sbjct 1591 TCTGTTGAAAGCTTTGAGTATTTTCCAGGTAGAGGCCTTTCTGCTACTGTTAACTGTATT 1650
Query 1768 AAGACAGTAGCTGAAGAG-AGTAGATTACGAAAAGCATCACTTGGTTCTA-TAGAGTTCA 1825
|| ||||| | |||| | || | | | || ||||| ||||||||||| | |||| ||||
Sbjct 1651 GAGTCAGTAACCGAAG-GTAGGAAACTGCGGAAAGCGTCACTTGGTTC-AGTAGAATTCA 1708
Query 1826 TTACCTCACTTTTCAAATCTGAAGATGAATCTA-AACAGATCAAGGATGCTGTAAACGCG 1884
|||| || || ||| |||| ||||||| |||| || |||||||| |||||||||| |
Sbjct 1709 TTACTTCGCTCTTCGAATCACAAGATGAGTCTAGAA-AGATCAAGAATGCTGTAAATTCT 1767
Query 1885 TC-TTCGTACGGAAAGGACTTCGTTCATGCTGCTCTTTCTGTTGATCAAAAGGTAACATT 1943
|| || ||||||||| ||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 1768 TCATT-GTACGGAAATGACTTTGTTCATGCTGTTCTTTCACTTGATCAAAAGGTAACATT 1826
Query 1944 GATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAACTTAAAAG 2003
|||||||||||| ||||||||||||| || ||| ||| |||| || |||||||||| ||
Sbjct 1827 GATTCACCTCGAGGATCAGCCTCGTCGAGAGGTATCAAAAGTTCTAACAGAACTTAAGAG 1886
Query 2004 CTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGACCATGATTCAAGTGCTTGGAGAGT 2063
||||| | | | || |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1887 CTGGGGTAAAATGAGAATAATGATGTTAACTGGAGACCATGAGTCAAGTGCTTGGAGAGT 1946
Query 2064 TGCAAACGCAGTGGGTATT-ACCGAAGTCTACTGCAACCTAAAGCCAGAGGATAAG-TTA 2121
|||||| || ||||||||| | |||||||||||||||||||| ||||| || || ||
Sbjct 1947 TGCAAATGCTGTGGGTATTGAT-GAAGTCTACTGCAACCTAAAACCAGAAGACAAACTTG 2005
Query 2122 AATCATGT-AAAGAACATTGCTCGGGAAG---CAGGTGGAGG---TTTAATTATGGTAGG 2174
| |||||| ||| ||||| ||| | ||| |||||||||| |||||| ||||| ||
Sbjct 2006 A-TCATGTCAAA-AACAT--CTCAG-AAGGTTCAGGTGGAGGAGGTTTAATCATGGTGGG 2060
Query 2175 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTGGGGATTGTTCTTGCTCA 2234
|||||| ||||| |||| ||||||| ||||||||||||| || || ||||||||||||||
Sbjct 2061 AGAAGGCATTAACGATGGTCCAGCTTTAGCAGCTGCAACCGTAGGAATTGTTCTTGCTCA 2120
Query 2235 ACGAGCGAGTGCCACTGCGATTGCCGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2294
||| || |||||| | || || ||||||||||| ||||||| |||| ||||||||||||
Sbjct 2121 ACGTGCAAGTGCCTCGGCTATAGCCGTTGCTGATGTCTTACTTCTTCAAGACAACATCAC 2180
Query 2295 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2354
|||||||| |||||| |||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 2181 TGGTGTTCCTTTCTGTATCGCCAAATCCCGCCAAACAACATCACTGGTCAAGCAAAACGT 2240
Query 2355 AGCTCTTGCATTAACATCGATATTCTTGGCCGCTCTTCCTTCAGTTTTAGGGTTTGT-CC 2413
||| |||| ||||| ||||||||||| ||||||||||| |||||| | || ||| | ||
Sbjct 2241 GGCTATTGCGTTAACCTCGATATTCTTAGCCGCTCTTCCATCAGTTCTCGGATTTCTTCC 2300
Query 2414 CATTGTGGTTGACGGTACT-TCTACATGAAGGCGGGACTCTTCTGGTGTGTCTAAACTC- 2471
| ||||||||||||||||| | ||||||||||||| || ||||| || || || |||||
Sbjct 2301 C-TTGTGGTTGACGGTACTAT-TACATGAAGGCGGAACACTTCTCGTTTGCCTTAACTCG 2358
Query 2472 AGTACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTTCAT 2523
| | || || ||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 2359 ATT-CGCAGTTTAAACGATCCATCCTGGTCATGGAAACAGGACATTGTTCAT 2409
Score = 702 bits (380), Expect = 0.0
Identities = 589/689 (85%), Gaps = 17/689 (2%)
Strand=Plus/Plus
Query 438 TCAGAAGATGTTGTTCGGA-TTCGCTAAAGCTATCGGATGGGTTAGATTGGCCAATTACC 496
||||||| ||||| || | |||||||||||||| |||||| || | || ||||||| ||
Sbjct 276 TCAGAAGTTGTTGCTC-AAGTTCGCTAAAGCTATTGGATGGATTCGCTTAGCCAATTTCC 334
Query 497 TCAGAGAGCATCTTCATCTTTGCTGCTCCGCCGCT-GCAATGTTCCTCGCTGCCGCCGTC 555
||||||| |||| |||||||| ||||| ||| | | | | |||||||| || || | |
Sbjct 335 TCAGAGAAAATCTCCATCTTTGTTGCTCATCCG-TCGTACTCTTCCTCGCCGCAGCGGCC 393
Query 556 TGTCCTTACCT--TG-CTCCTGAACCTTACATTA-AGTCTCTTCAGAACGCATTCATGAT 611
|||||| || | || |||| |||||||||||| | | |||| ||| | ||||||||
Sbjct 394 TGTCCTCACTTGATGATTCCTAAACCTTACATTACA-CCAATTCAAAACTCCTTCATGAT 452
Query 612 TGTTGGTTTTCCTCTTGTTGGAGTTTCAGCATCTCTCGACGCACTTATGGATATAGCTGG 671
||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 453 TGTTGCTTTCCCTCTTGTTGGAATTTCAGCATCTCTTGACGCACTTATGGATATAGCTGG 512
Query 672 AGGAAAAGTGAACATCCATGTCTTGATGGCACTT-GCGGCTTTTGCATCTGTGTTTATGG 730
||||||||||||||||||||| || |||||| || || |||||||| |||||||||||||
Sbjct 513 AGGAAAAGTGAACATCCATGTTTTAATGGCA-TTAGCTGCTTTTGCTTCTGTGTTTATGG 571
Query 731 GAAATGCTTTGGAAGGAGGATTGCTTCTAGCTATGTTCAATCTTGCTCATATTGCTGAGG 790
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 572 GAAATGCTTTGGAAGGAGGATTACTTCTAGCCATGTTCAATCTTGCTCATATTGCTGAGG 631
Query 791 AGTTCTTTACTAGTCGATCAATGGTGGATGTCAAAGAATTGAAAGAGAGTAATCCAGATT 850
||||||| |||||| | || ||| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 632 AGTTCTTCACTAGTAGGTCCATGTTGGATGTTAAAGAGTTGAACGAGAGTAATCCAGATT 691
Query 851 CTGCATTGTTGATCGAAGT-ACACAATGGCAATGTTCCAAA-TATAT-CTGATTTGTCAT 907
|||||||| |||| || || | | ||| ||||| ||||| | | | | |||||| |||
Sbjct 692 CTGCATTGGTGATTGATGTGA-ATGATGAAAATGTACCAAACT-TCTTC-GATTTGACAT 748
Query 908 ACAAAAGCGTTCCTGTGCACAGCGTAGAAGTTGGATCCTATGTTTTGGTTGGAACTGGTG 967
|||||||||| | |||| | | |||||||||||||||||| ||||||| ||||||||||
Sbjct 749 ACAAAAGCGTACATGTGAAGAATGTAGAAGTTGGATCCTATATTTTGGTAGGAACTGGTG 808
Query 968 AGATTGTGCCTGTAGATTGCGAAGTCTATCAAGGTAGTGCTACAATTACAATTGAGCACT 1027
||||||||||||| |||||| ||||||||||||||| ||| || || ||||||||||| |
Sbjct 809 AGATTGTGCCTGTGGATTGCCAAGTCTATCAAGGTAATGCAACCATAACAATTGAGCATT 868
Query 1028 TGACTGGGGAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAA 1087
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 869 TGACTGGGGAAGTGAAGCCATTGGAAGCAAAAGCTGGAGATAGAGTTCCTGGTGGTGCAA 928
Query 1088 GAAATTTGGATGGCAGAATGATTGTAAAG 1116
||| |||| |||||||||| ||||| |||
Sbjct 929 GAACTTTGAATGGCAGAATTATTGTGAAG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105967061590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5