BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37280.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944131 jgi|Araly1|944131|scaffold_700360.1 1594 0.0
> Ahg944131 jgi|Araly1|944131|scaffold_700360.1
Length=1003
Score = 1594 bits (863), Expect = 0.0
Identities = 933/968 (96%), Gaps = 0/968 (0%)
Strand=Plus/Plus
Query 60 ACAATGGGAAGCTCGTCGAAGGAAGAGACGGCGAGTGACGGAGATACGGCGAGCGGTGGC 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 18 ACAATGGGAAGCTCGTCGAAGGAAGAGACGGCGAGTGATGGAGATACGGCGAGCGGTGGC 77
Query 120 GCCTCACCGTCCAACGACGGCAGACTCTTCTCGGAGGGCGAGCGTGTTCTCGCTTACCAT 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 78 GCCTCACCGTCCAACGACGGCAGACTCTTCTCGGAGGGCGAACGTGTTCTCGCCTACCAT 137
Query 180 GGTCCTCGCGTCTACGGAGCCAAGGTTCAAAAGGTCGAGCTTCGGAAAAAGGAGTGGAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GGTCCTCGCGTCTACGGAGCCAAGGTTCAAAAGGTCGAGCTTCGGAAAAAGGAGTGGAAA 197
Query 240 TACTTTGTGCACTATCTTGGTTGGAACAAAAATTGGGATGAATGGGTTAGTGCGGATAGA 299
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 198 TACTTTGTTCACTATCTTGGTTGGAACAAAAATTGGGATGAATGGGTTAGCGCGGATAGG 257
Query 300 TTGTTGAAACATACCGAGGAGAATCTTGTCAAACAGAAAGCTCTAGACAAAAAGCAAGGA 359
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 258 TTGTTGAAACATACTGAGGAGAACCTTGTGAAACAGAAAGCTCTAGACAAAAAGCAAGGA 317
Query 360 GTTGAAAAAGGTACCAAGTCTGGCCGTTCCGCTCAGACAAAAACTAGAAGCTCTGCAGAC 419
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 318 GTAGAAAAAGGTACCAAGTCTGGGCGTTCGGCTCAGACAAAAACTAGAAGCTCTGCAGAC 377
Query 420 ACAAAGGCTGATAAAGATGACACCAAGACCAATGCTGCAAAAGGGAAGAAACGAAAGCAC 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 ACAAAGGCTGATAAAGATGACACGAAGACCAATGCTGCAAAAGGGAAGAAACGAAAGCAC 437
Query 480 GAGTCAGGCAATGAGAAGGATAATGTAACGGCGGAGAAGCTAATGAAGATCCAAATTCCC 539
||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 438 GAGTCCGGCAATGAGAAGGATAACGTATCGGCAGAGAAGCTAATGAAGATCCAAATTCCC 497
Query 540 GCATCACTTAAAAAGCAACTCACTGACGACTGGGAGTATATTGCGCAGAAGGACAAGGTT 599
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 498 GCAACACTTAAAAAGCAGCTCATTGACGACTGGGAGTATATTGCGCAGAAGGACAAGGTT 557
Query 600 GTGAAACTTCCTCGTTCACCTAACGTCGATGAGATATTGTCCAAGTACCTTGAATTCAAA 659
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 558 GTGAAACTTCCTCGTTCACCTAATGTCGATGAGATATTGGCCAAGTACCTTGAATTCAAA 617
Query 660 ACCAAGAAGGATGGAATGGTAACTGATTCGGTCGCTGAAATATTGAAAGGCATAAGGAGT 719
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 618 ACCAAGAAGGATGGAATGATAACTGATTCGGTCGCTGAAATTTTGAAAGGCATAAGGAGT 677
Query 720 TATTTCGACAAGGCATTGCCAGTGATGCTCCTATATAAGAAAGAGAGGCGACAATACCAA 779
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 678 TATTTCGACAAGGCATTACCAGTGATGCTCTTATATAAGAAAGAGCGGCGACAATACCAA 737
Query 780 GAATCAATCGTGGATGATACTTCACCTTCAACTGTTTATGGCGCCGAGCATTTGCTCCGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GAATCAATCGTGGATGATACTTCACCTTCAACTGTTTATGGCGCCGAGCATTTGCTCCGT 797
Query 840 CTCTTTGTCAAGTTGCCAGATCTTTTTTCATATGTAAACATGGAAGAAGAAACATGGAGT 899
|||||||| ||||| || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 798 CTCTTTGTGAAGTTACCGGAGCTTCTTTCATATGTAAACATGGAAGAAGAAACATGGAGT 857
Query 900 CGCATGCAACAAACATTATCAGACTTCCTCAAGTTTATTCAGAAGAATCAGAGCACTTTC 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 858 CGCATGCAGCAAACATTATCAGACTTCCTCAAGTTTATTCAGAAGAATCAGAACACTTTC 917
Query 960 TTGCTACCATCAGCATATGATTCTGATAAGGTTTCAGATGGTAAAGGCAAAGGAAAAGAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TTGCTACCATCAGCATATGATTCTGATAAGGTTTCAGATGGTAAAGGCAAAGGAAAAGAC 977
Query 1020 GACTGACA 1027
|| |||||
Sbjct 978 GATTGACA 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5