BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37290.1
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944130 jgi|Araly1|944130|scaffold_700359.1 409 1e-113
> Ahg944130 jgi|Araly1|944130|scaffold_700359.1
Length=298
Score = 409 bits (221), Expect = 1e-113
Identities = 275/300 (92%), Gaps = 7/300 (2%)
Strand=Plus/Plus
Query 55 GAGTTAAATTGTTCTTAAACATGATGATGAACAA-AAA--CGTTC-TGAGTTCGATTCTG 110
|||||||| ||||||||||||||||||||| ||| ||| ||||| || ||||||| |||
Sbjct 1 GAGTTAAAGTGTTCTTAAACATGATGATGATCAACAAAGCCGTTCTTG-GTTCGATCCTG 59
Query 111 TTCTTCATGTTGATTGGTTCGGTTCTTGTCGAGAGTCGTCCGCTTGGTCTAACAAAGACC 170
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GTCTTCATGTTGATCGGTTCAGTTCTTGTTGAGAGTCGTCCGCTTGGTCTAACAAAGACC 119
Query 171 GAGGAGAAGTTCGTGGCTAGTTTATTCGATGGCTTATCACTTGGTTCGATCAAAGACTCA 230
||||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct 120 GAGGAGAAGCTCGTGGCTGGTTTCTTCGATGGCTTGTCACTTGGTTCGATAAAAGACTCA 179
Query 231 GGTCCAAGTCCAGGCGAGGGTCATAAGGTCGTGGA-CAGGAAGGATACGTTTCGATTTGT 289
||||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||||||
Sbjct 180 GGTCCGAGTCCAGGCGAGGGTCACAAGGTCGTGGAAC-GGAGGGATACGTTTCGATTTGA 238
Query 290 TAAGCACTCAGGTCCAAGCCCAAGCGGACCGGGCCACTAATGTTTCAATCTTTAGTTCAA 349
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 TAAGCACTCCGGTCCAAGCCCAAGCGGACCGGGTCACTAATGTTTCAATCTTTAGTTCAA 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20985573950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5