BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37295.1 Length=546 Score E Sequences producing significant alignments: (Bits) Value Ahg490890 jgi|Araly1|490890|fgenesh2_kg.7__323__AT4G37295.1 776 0.0 > Ahg490890 jgi|Araly1|490890|fgenesh2_kg.7__323__AT4G37295.1 Length=541 Score = 776 bits (420), Expect = 0.0 Identities = 504/543 (93%), Gaps = 12/543 (2%) Strand=Plus/Plus Query 1 ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCTCAAGAACCGAACAACCAC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCCCAAGAACCGAACAACCAC 60 Query 61 ACC--AAAAAATGAGACCGGTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT 118 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACCAAAAAAAATGAGACCATTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT 120 Query 119 TTCGGAATCAAGAACCGCGGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGAAATCGA 178 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 121 TTCGGAATCAAGAACCGCCGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGATATTGA 180 Query 179 TCAATCTAAAATTCATGGGGTCGATTTACGAAGTGAAGACTTATTAGGGGTCGTGATACA 238 ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct 181 TCAATCTAAAATTCATGGGGTCGATTTGCGAGGCGAAGACTTATTAGGGGTCGTGATACA 240 Query 239 TGGTTATAAGAAGCTAAGGTGGCTCTCATCGGCCGGGGAGAGGATGCATACAATGGCTTC 298 ||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 241 TGGTTATAAGAAGTTAAGGTGGCTCTCTTCGGCTGGAGAGAGGATGCATACAATGGCTTC 300 Query 299 AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACGAACCCAAA-CAAAACATTAT--- 354 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 301 AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACTAACCCAAAACAAAACATTATTTC 360 Query 355 --A--CTTCGATATTTGTTTAGCTCAGGTCATAGAATCATAtttttcattttttATAGAT 410 | ||||||||||| ||||||| |||| ||||||| ||||||| ||||| |||||||| Sbjct 361 GTATACTTCGATATTTATTTAGCTTAGGTTATAGAATTATATTTT-CATTTGTTATAGAT 419 Query 411 TATTATATTTATTCAGTCGCTAAAGATCCATGTAAAGTTTAGAAGGGTGATATTCTTTGA 470 |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 420 TATTATATTTAT-CAGTCGTTAAAGATCAATGTAAAGTTTAGAAGGGTGATATTCTTTGA 478 Query 471 TCATACAATAGTCGGTTTCCTTCTCATAAACACCAATTTATAGTACGTGCCCATTAATCG 530 ||||||||||||||||||||||||||||| ||||||| |||| |||||||| || ||| | Sbjct 479 TCATACAATAGTCGGTTTCCTTCTCATAAGCACCAATGTATATTACGTGCCAATAAATTG 538 Query 531 ATA 533 ||| Sbjct 539 ATA 541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19917217458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5