BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37295.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490890 jgi|Araly1|490890|fgenesh2_kg.7__323__AT4G37295.1          776    0.0  


> Ahg490890 jgi|Araly1|490890|fgenesh2_kg.7__323__AT4G37295.1
Length=541

 Score =  776 bits (420),  Expect = 0.0
 Identities = 504/543 (93%), Gaps = 12/543 (2%)
 Strand=Plus/Plus

Query  1    ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCTCAAGAACCGAACAACCAC  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCCCAAGAACCGAACAACCAC  60

Query  61   ACC--AAAAAATGAGACCGGTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT  118
            |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACCAAAAAAAATGAGACCATTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT  120

Query  119  TTCGGAATCAAGAACCGCGGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGAAATCGA  178
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct  121  TTCGGAATCAAGAACCGCCGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGATATTGA  180

Query  179  TCAATCTAAAATTCATGGGGTCGATTTACGAAGTGAAGACTTATTAGGGGTCGTGATACA  238
            ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct  181  TCAATCTAAAATTCATGGGGTCGATTTGCGAGGCGAAGACTTATTAGGGGTCGTGATACA  240

Query  239  TGGTTATAAGAAGCTAAGGTGGCTCTCATCGGCCGGGGAGAGGATGCATACAATGGCTTC  298
            ||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct  241  TGGTTATAAGAAGTTAAGGTGGCTCTCTTCGGCTGGAGAGAGGATGCATACAATGGCTTC  300

Query  299  AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACGAACCCAAA-CAAAACATTAT---  354
            |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||   
Sbjct  301  AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACTAACCCAAAACAAAACATTATTTC  360

Query  355  --A--CTTCGATATTTGTTTAGCTCAGGTCATAGAATCATAtttttcattttttATAGAT  410
              |  ||||||||||| ||||||| |||| ||||||| ||||||| ||||| ||||||||
Sbjct  361  GTATACTTCGATATTTATTTAGCTTAGGTTATAGAATTATATTTT-CATTTGTTATAGAT  419

Query  411  TATTATATTTATTCAGTCGCTAAAGATCCATGTAAAGTTTAGAAGGGTGATATTCTTTGA  470
            |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  420  TATTATATTTAT-CAGTCGTTAAAGATCAATGTAAAGTTTAGAAGGGTGATATTCTTTGA  478

Query  471  TCATACAATAGTCGGTTTCCTTCTCATAAACACCAATTTATAGTACGTGCCCATTAATCG  530
            ||||||||||||||||||||||||||||| ||||||| |||| |||||||| || ||| |
Sbjct  479  TCATACAATAGTCGGTTTCCTTCTCATAAGCACCAATGTATATTACGTGCCAATAAATTG  538

Query  531  ATA  533
            |||
Sbjct  539  ATA  541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5