BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37310.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490889 jgi|Araly1|490889|fgenesh2_kg.7__322__AT4G37310.1 2444 0.0
> Ahg490889 jgi|Araly1|490889|fgenesh2_kg.7__322__AT4G37310.1
Length=1745
Score = 2444 bits (1323), Expect = 0.0
Identities = 1582/1708 (93%), Gaps = 14/1708 (1%)
Strand=Plus/Plus
Query 75 AAGTTAGAGaaaaaaaGAAGAGAAAAGGAGTTATATATGGATTGTATTTTACTTATTCTG 134
|||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||
Sbjct 1 AAGTTAGAGAAAAAAAGAAGAGCAAAGGAGTTATGGAT-AATTATATTTTACTTATTCTC 59
Query 135 ACTACT-CTTGTTGCCATTTTCATCGTCAAGATTGTTCTCCTAGTCACTAAACCTAACAA 193
|| | | ||||| | ||| ||||| ||||||| |||||||| || ||||||| ||||
Sbjct 60 ACCA-TCCTTGTAACAATTCTCATCACCAAGATTTTTCTCCTATTCGCTAAACCAAACAT 118
Query 194 AAACCTTCCACCGTCGCCAAATATATGTTTTCCGATCATCGGACACCTTCACCTCCTCAA 253
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 119 AAACCTTCCACCGTCGCCACGTATCTGTTTTCCAATCATCGGACACCTTCACCTCCTCAA 178
Query 254 AAAGCCACTGCTACACCGGACTCTCAGCCATCTCTCCCACTCCCTCGGCCCCGTCTTTTC 313
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 ACAGCCACTGCTACACCGGACTCTCAGCCATCTCTCGCACTCCCTCGGCCCCGTCTTTTC 238
Query 314 TCTACGCCTCGGCTCTCGCCTTGCCGTTATCATCTCATCTCCAACGGCAGCCGAAGAATG 373
| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 239 TATACGCCTCGGCTCTCGCCTCGCCGTTATCATCTCGTCTCCAACGGCAGCAGAAGAATG 298
Query 374 CTTCTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 433
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTTTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 358
Query 434 TGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCACTGGCGAAACCT 493
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 359 CGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCATTGGCGAAATCT 418
Query 494 CCGTCGTATCACCGCTTTAGAAGTCTTCTCCACAAATCGACTCAAC-GCTTCAGCGGAAA 552
||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 419 CCGTCGTATCACCGCCTTAGAAGTCTTCTCCACGAATCGACTCAACGGC-TCAGCAGAAA 477
Query 553 TCCGACATGACGAAGTTAAGATGCTTCTCCAAAAGCTTCACGATTTATCTGTCGAACGCC 612
||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 478 TCCGACAAGACGAAGTTAAGAGGCTTCTCCAAAAGCTTCACGGTTTATCTGTGGAACGCC 537
Query 613 CGGCTAAAGTGGAGTTACGACAGTTACTAACGGGTCTTACCCTAAATGTGATAATGAGAA 672
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 538 CGGCTAACGTGGAGTTACGACCGTTACTAACTGGTCTTACCCTAAATGTGATAATGAGAA 597
Query 673 TGATGACCGGAAAGAGATTCTTCGAGGAAGATGATG-GCGGAAAGGCGGGGATAAGTTTG 731
||||||||||||||||||||| ||| |||||||| | |||||||||||| ||| || |||
Sbjct 598 TGATGACCGGAAAGAGATTCTACGAAGAAGATGA-GAGCGGAAAGGCGGCGATGAGCTTG 656
Query 732 GAGTTCCGGGAACTAGTGGCGGAGATTCTAGAGCTCTCTGCGGCGGACAATCCAGCTGAT 791
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 657 GAGTTCCGGGAACTTGTGGCGGAGATTCTAGAGCTCTCCGCGGCCGACAATCCAGCTGAT 716
Query 792 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAAGGTTTGGTCAAGAGAGCAAAGAGGATT 851
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 717 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAGGGTTTGGTCAAGAGAGCAAAAAGGATT 776
Query 852 GGAGAAAGGATGGATAGTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 911
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAGAAAGGATGGATATTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 836
Query 912 AGATTGGAGTTTAAGAACACCATGATTGCTCATTTACTTGATTCTCAAGAAAAAGAGCCT 971
|||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||
Sbjct 837 AGATTGGAGTTTAAGAACACTATGATTGGTCATTTGCTTGGTTCTCAAGAAAAAGAGCCT 896
Query 972 CATAACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGTAGTAGGAGGCACA 1031
||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 897 CATTACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGCAATAGGAGGTACG 956
Query 1032 GATACATCGGCCTTAACCGTGGAATGGGCAATGTCAAATTTATTGAATCATCCACAAATA 1091
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 957 GATACATCGGCCTTAACCGTAGAATGGGCAATGTCAAATTTATTGAATCATCCACAAGTA 1016
Query 1092 CTAGAGACCACGAGACAAAACATTGATACTCAAATGGAAACATCAAGTAGTCGTCGTTTG 1151
||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1017 CTAGAGACCACGAGAAAAAACATTGATACTCAAATGGAATCATCAAGTACTCGTCAATTG 1076
Query 1152 TTGAAAGAAGAAGATTTGGTAAACATGAACTACTTGAAAAATGTTGTGTCGGAGACACTA 1211
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1077 TTGAAAGAAGAAGATTTGGTGAACATGAACTACTTGAACAATGTTGTGTCCGAGACACTA 1136
Query 1212 AGACTTTACCCTGTGGCACCACTTATGGTTCCTCATGTGCCATCTTCTGACTGTGTAATC 1271
|| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1137 AGGCTTTATCCTGTGGCACCACTTATGGTTCCTCATTTGCCATCTTCTGATTGTGTAATT 1196
Query 1272 GGTGGATTCAACGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1331
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGTGGGTTTGATGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1256
Query 1332 GATCCAAGCGTGTGGGATGATCCAACGTCATTTAAGCCGGAGAGATTTGAAGGGAGTGAT 1391
||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct 1257 GATCCAAGCGTGTGGGATGATCCGACGTCGTTCAAGCCAGAGAGATTTGAAGGGAGGGAT 1316
Query 1392 CAGTTTGGACATTACAATGGTAAAATGATGCCGTTTGGGTTAGGAAGACGGGCTTGTCCT 1451
||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||
Sbjct 1317 CAGTTTGGACATTACAATGGTAAGATGATGCCCTTTGGGTTAGGGAGACGGGTTTGTCCC 1376
Query 1452 GGGTTGAGTTTGGCTAACCGGGTTGTTGGGTTATTATTGGGTTCGATGATTCAGTGCTTT 1511
||| |||||||||||||||||||||||||||| || |||||||||||| ||||||| |||
Sbjct 1377 GGGATGAGTTTGGCTAACCGGGTTGTTGGGTTGTTGTTGGGTTCGATGGTTCAGTGTTTT 1436
Query 1512 GAGTGGGAAAGCGGCTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTTTG 1571
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1437 GAATGGGAAAGTGACTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTATG 1496
Query 1572 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGAACACGTGAGATGGCTTCCGAGTTGTTG 1631
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGACCACGTGAGATGGCTTCCGAGTTGTTG 1556
Query 1632 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTTGATTTTATAAATTTGTAAGT 1691
||||||||||||||||||||||||||||||||||||||| |||||| |||| | |||||
Sbjct 1557 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTGGATTTTGTAAAACTATAAGT 1616
Query 1692 TAATACATTATTACATGC-AT--ATATGATTCAGTGATTT--ATTA-AGCAGCAAAATGT 1745
||||||||| |||||| || ||||||||||||||||| |||| | ||||||||||
Sbjct 1617 TAATACATTTTTACATTATATGCATATGATTCAGTGATTTGGATTATA-CAGCAAAATGG 1675
Query 1746 TTGGAGACACtttttttttttttttGGC 1773
||||||||||| |||||||||||||||
Sbjct 1676 TTGGAGACACTCATTTTTTTTTTTTGGC 1703
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1806 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGa 1848
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5