BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37320.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490888 jgi|Araly1|490888|fgenesh2_kg.7__321__AT4G37320.1 2405 0.0
Ahg944125 jgi|Araly1|944125|scaffold_700354.1 885 0.0
> Ahg490888 jgi|Araly1|490888|fgenesh2_kg.7__321__AT4G37320.1
Length=1553
Score = 2405 bits (1302), Expect = 0.0
Identities = 1455/1530 (95%), Gaps = 6/1530 (0%)
Strand=Plus/Plus
Query 1 GAAAAACCCAAAAACAAAAG-AAGCAATCAACAAGAAAATGGACCTCACCCAAATCCTAC 59
|||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct 1 GAAAGACCAAAAAAC-AAAGAAAGCAATCAACAAGAAAATGGACATCACCCAAATCCTGC 59
Query 60 TCCTCTCCTTTCTCTTTCTCACTATCTCCATCAAACTCTTGCTCACAAAATCTAACCGGA 119
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||
Sbjct 60 TCCTCTCCTTTCTCTTTCTCTCTATCTCTATCAAACTCTTGCTCACAAAATCTGACCGGA 119
Query 120 AACCTAATCTTCCTCCTTCTCCGGCTTACCCTTTACCGGTTATCGGCCACCTCCACCTCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AACCTAATCTTCCTCCTTCTCCGGCTTACCCTTTACCGGTTATCGGCCACCTCCACCTTC 179
Query 180 TCAAGCAACCGGTCCACCGAACATTCCACTCCATCTCTAAGTCCCTTGGAAATGCTCCAA 239
||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |
Sbjct 180 TCAAGCAACCGGTCCACCGAACATTCCTCTCCATCTCTCAGTCCCTCAGAAATGCTCCGA 239
Query 240 TCTTCCACCTCCGCCTGGGAAACCGCCTCGTTTACGTCATCTCCTCACACTCCATAGCCG 299
||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 240 TCTTCTACCTCCGCCTGGGAAACCGCCTCGTTTACGTTATCTCCTCACATTCTATAGCCG 299
Query 300 AAGAATGTTTCACCAAAAACGACGTCGTTCTTGCGAACCGTCCTGATATCATCATGGCCA 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AAGAATGTTTCACCAAAAACGACGTCGTTCTTGCGAATCGTCCTGATATCATCATGGCCA 359
Query 360 AACACGTCGGCTATAACTTTACCAATATGATTGCAGCATCTTACGGCGACCACTGGAGGA 419
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 360 AACACGTCGGCTATAACTTTACCAATATGATTGCAGCACCTTACGGCGACCACTGGCGTA 419
Query 420 ATCTCCGCCGCATCGCCGCCGTCGAGATATTTTCTTCTCATAGAATCAGTACCTTTT-CT 478
| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 420 ACCTCCGCCGCATCGCCGCCGTCGAGATTTTTTCTTCTCATAGAATCAGTA-CTTTTAAG 478
Query 479 TCTATCCGTAAAGACGAGATCCGACGGCTCATAACACATCTCTCTAGAGACTCCTTGCAC 538
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 479 TCTATCCGTAAAGACGAGATCCGACGGCTCATAACACTTCTCTCTAGAGACTCCTTACAC 538
Query 539 GGATTTGTTGAAGTGGAGTTGAAATCGTTATTAACCAACTTGGCATTCAACAACATCATC 598
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 539 GGATTTGTTGAAGTGGAGTTGAAATCATTATTAGCCAACTTGGCATTCAACAACATCATC 598
Query 599 ATGATGGTAGCCGGAAAACGATATTACGGTACCGGTACAGAAGACAATGATGAAGCCAAG 658
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 ATGATGGTAGCCGGAAAGCGATATTACGGTAGCGGTACAGAAGACAATGATGAAGCCAAG 658
Query 659 CTCGTGAGGGAACTTATAGCGGAGATAATGGCCGGCGCCGGTTCTGGAAATTTGGCTGAT 718
|||||||||||||||||| ||||| || || |||||||| ||||||| |||||||||||
Sbjct 659 CTCGTGAGGGAACTTATATCGGAGGTAGTGACCGGCGCCAGTTCTGGCAATTTGGCTGAC 718
Query 719 TATCTTCCG-TCCATAAATTGGGTCACAAACTTTGAGAACCAGACCAAAATCTTGGGGAA 777
||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 719 TATCTTCCGAT-CATAAATTGGGTCACAAACTTTGAGAACCAGACCAAGATTTTGGGGAA 777
Query 778 TCGACTCGATAGAGTCCTGCAAAAACTGGTTGATGAGAAACGTGCAGAGAAAGAAAAGGG 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCGACTCGATAGATTCCTGCAAAAACTGGTTGATGAGAAACGTGCAGAGAAAGAAAAGGG 837
Query 838 TCAAACTTTGATCGATCATTTGCTTTCTTTCCAAGAAACCGAACCCGAGTACTATACTGA 897
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 TCAAACTTTGATCAATCATTTGCTTTCTTTCCAAGAAACCGAACCCGATTACTATACTGA 897
Query 898 TGTCATCATCAAAGGAATCATACTGGCTTTGGTTCTTGCGGGGACAGATACATCTTCAGT 957
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||
Sbjct 898 TGTCATCATCAAAGGAATCATACTCGCTCTGGTACTTGCGGGGACAGATACATCTGCAGT 957
Query 958 GACGTTGGAATGGGCAATGTCAAATTTGCTGAACCATCCAGAGATACTTGAGAAAGCGAG 1017
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 958 GACGTTGGAATGGGCAATGTCAAATTTGTTGAATCATCCAGGGATACTTGAGAAAGCGAG 1017
Query 1018 AGCGGAGATCGATGATAAAATCGGTTCAGACCGGTTAGTTGAAGAATCAGATATTGTAAA 1077
|||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1018 AGCGGAAATCGATGAAAAAATCGGTTCAGACCGGTTAGTTGAAGAATCAGACATTGGAAA 1077
Query 1078 TCTCCATTATCTCCAAAACATTGTGTCAGAAACATTACGTTTGTATCCTGCGGTTCCACT 1137
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1078 TCTCCATTATCTCCAAAACATTGTGTCGGAAACACTACGTTTGTATCCTGCGGTTCCACT 1137
Query 1138 ACTACTCCCTCATTTCTCATCGGATGAATGTAAAGTGGCGGGCTACGATATGCCACGTCG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACTACTCCCTCATTTCTCATCGGATGAATGTAAAGTGGCGGGCTACGATATGCCACGTCG 1197
Query 1198 CACGTTGTTATTAACAAACGTATGGGCGATGCATAGAGATCCAGGTTTATGGGAAGAGCC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CACGTTGTTATTAACAAACGTATGGGCGATGCATAGAGATCCAGGTTTATGGGAAGAGCC 1257
Query 1258 AGAGAGGTTCAAGCCGGAGAGGTTCGAGAAAGAAGGAGAGGCTCGAAAGCTAATGCCGTT 1317
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 AGAGAGGTTCAAACCGGAGAGGTTCGAGAAAGAAGGAGAGACTCGAAAGCTAATGCCGTT 1317
Query 1318 TGGGATGGGACGACGAGCTTGTCCTGGAGCTGAGCTTGGGAAGCGGTTAGTGAGCCTTGC 1377
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1318 TGGGATGGGACGACGAGCTTGTCCTGGAGCCGAGCTTGGGAAGCGGTTAGTAAGTCTTGC 1377
Query 1378 TCTTGGGTGCTTGATTCAGTCTTTCGAGTGGGAGAGAGTTGGTGCAGAACTTGTGGACAT 1437
| |||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 TATTGGCTGTTTGATTCAGTGTTTCGAGTGGGAGAGAGTTGGTGAAGAACTTGTGGACAT 1437
Query 1438 GACTGAAGGCGAAGGGATCACTATGCCTAAAGCTACTCCGTTGCGAGCTATGTGCAAGGC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GACTGAAGGCGAAGGGATCACTATGCCTAAAGCTACTCCGTTGCGAGCTATGTGCAAGGC 1497
Query 1498 ACGTGCCATTGTTGGTAAAACGATATAATT 1527
||||||| ||||||||||| |||||||||
Sbjct 1498 ACGTGCCGTTGTTGGTAAAGTGATATAATT 1527
> Ahg944125 jgi|Araly1|944125|scaffold_700354.1
Length=1519
Score = 885 bits (479), Expect = 0.0
Identities = 1194/1529 (78%), Gaps = 90/1529 (6%)
Strand=Plus/Plus
Query 29 AAC-AAGAAAATGGACCTCACCCAAATCCT-ACTCCTCTCCTTTCTCTTTCTCACTAT-- 84
||| || |||||||| | ||||||||| | | |||||| |||| ||| |||| | |
Sbjct 11 AACAAACAAAATGGATTTGACCCAAATCTTGA-TCCTCT-CTTT-TCTGTCTCTTTTTGC 67
Query 85 CTCCATCAAACTCTTGCTCACAAAATCTAACCGGAAACCT-AATCTTCCTCCTTCTCC-G 142
|||| || | |||||||||||| ||| || |||||| || || |||||||| ||||| |
Sbjct 68 CTCCGCCATATTCTTGCTCACAAGATCCAAACGGAAA-CTGAACCTTCCTCCGTCTCCGG 126
Query 143 GCTTAC-CCTTTACCGGTTATCGGCCACCTCCACCTCCTCAAGCAACCGGTCCACCGAAC 201
| | | || || || || ||||| ||||||||||| ||||||| |||| | ||||| ||
Sbjct 127 GGAT-CTCC-TTGCCAGTGATCGGGCACCTCCACCTTCTCAAGCCACCGCTTCACCGGAC 184
Query 202 ATTCC--ACTCCATCTCTAAGTCCCTTGGAAATGCTCCAATCTTCCACCTCCGCCTGGGA 259
|||| ||| || | || ||| | ||||||||||| |||||||| |||||||| |||
Sbjct 185 GTTCCTTTCTCTTTC-CCAA-TCCATCGGAAATGCTCCGATCTTCCATCTCCGCCTCGGA 242
Query 260 AACCGCCTCGTTTACGTCATCTCCTCACACTCCATAGCCGAAGAATGTTTCACCAA-AAA 318
|| ||||||||||| |||||||| |||| || || |||||||||||||||| ||| ||
Sbjct 243 AATCGCCTCGTTTATGTCATCTCTTCACGTTCTATCGCCGAAGAATGTTTCA-CAACGAA 301
Query 319 CGACGTCGTTCTTGCGAACCGTCCTGA-TATCATC-AT-GGCCAAACACGTCGGCTATAA 375
|||||||||||| ||||||||||| | | ||| | || | ||| ||||||||||| ||
Sbjct 302 CGACGTCGTTCTCGCGAACCGTCCCAAGT-TCA-CGATAAG-CAAGCACGTCGGCTACAA 358
Query 376 CTTTACCAATA-TGA-T-TGCAGCATCTTACGGCGACCACTGGAGGAATCTCCGCCGCAT 432
| ||| || | | | | | ||||||||||||| || |||||||| |||||||||||
Sbjct 359 CGGCACC--TACTTACTCT-CTTCATCTTACGGCGATCATTGGAGGAACCTCCGCCGCAT 415
Query 433 CGCCGCCGTCGAGATATTTTCTTCTCATAGAATCAGTACCTTTTCTTC-TATCCGTAAAG 491
|||||||||||||||||| || |||| ||| ||| | ||||| ||| ||| ||||| |
Sbjct 416 CGCCGCCGTCGAGATATTATCCACTCACAGACTCAATTCCTTT-CTTTATATTCGTAAGG 474
Query 492 ACGAGATCCGACGGCTCATAACACATCTCTCTAGAGACTCCTTGCACGGATTTGTTGAAG 551
||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| || |
Sbjct 475 ACGAGATCCGACGGCTCATTTCACATCTCTCTCGAGATTCCTTACACGGATTTGTGGAGG 534
Query 552 TGGAGTTGAAATCGTTATTAACCAACTTGGCATTCAACAACATCATCATGA-TGGTAGCC 610
| ||| ||||| | ||||||||||| ||||||| ||||| || ||||| || || | |||
Sbjct 535 TAGAGATGAAAACATTATTAACCAATTTGGCATCCAACACCACCATCA-GAATGTTGGCC 593
Query 611 GGAAA-ACGATATTACGGTACCGGTACAGAAGACAATGATGAAGCCAAGCTCGTGAGGGA 669
|| || | |||||| ||| | | | ||||| |||||||| || ||||||| | |
Sbjct 594 GGGAAGA-GATATTTTGGT---G--A--G--GACAACGATGAAGCTAAACTCGTGAAGCA 643
Query 670 ACTTATAG-CGGAGATAATGGCCGGCGCCGGTTCTGGAAATTTGGCTGATTATCTTCCG- 727
||| | | ||||| || || |||| ||| | ||||| |||||||||| ||
Sbjct 644 TCTTGT-GTCGGAGGCGGTGACCAGCGCTGGTGCAGGAAACCCCATTGATTATCTTTCGA 702
Query 728 TCCATAAATTGGGTCACAAACTT-TGAGAACCAGAC-CAA-AATCTTGGGGAATCGACTC 784
| || ||||||||| | || ||| || | || ||| ||| ||||| ||| | |
Sbjct 703 TTT-TACGTTGGGTCACGAG-TTATGAAAAAC-GAATCAAGAAT-TTGGGAAATAGGTTT 758
Query 785 GATAGAGTCCT-GCAAAAACTGGTTGATGAGAAACGTGCAGAGAAAG-AAAAGGGTCAAA 842
||| | || | ||| | | || || || ||||||||||| |||| |||| ||| |||
Sbjct 759 GAT-GCGTTTTTGCAGCGATTAGTCGACGAAAAACGTGCAGA-AAAGGAAAAAGGTGAAA 816
Query 843 CTTTGATCGATCATTTGCTTTCTTTCCAAGAAAC-CGAACCCGAGTACTATACTGATGTC 901
|| |||||||||| |||||| || ||||||| | | |||| || |||||||| ||||||
Sbjct 817 CTATGATCGATCACTTGCTTGCTCTCCAAGACATTC-AACCTGATTACTATACCGATGTC 875
Query 902 ATCATCAAAGGAATCATACTGGCT-TTGGTTCTTGCGGGGACAGATACATCTTCAGTGAC 960
|||||||||||||||||||| || || | |||| ||||||||||| || ||||| ||
Sbjct 876 ATCATCAAAGGAATCATACTTACTCTTA-TAATTGCAGGGACAGATACGTCATCAGTAAC 934
Query 961 GTTGGAATGGGCAATGTCAAATTTGCTGAACCATCCAGAGATACTTGAGAAAGCGAGAGC 1020
| |||||||||||||||||| || ||||||||||||| |||||| | |||||||||
Sbjct 935 ACTAGAATGGGCAATGTCAAATCTGTTGAACCATCCAGAAATACTTAAAAAAGCGAGAAT 994
Query 1021 GGAGATCGATGATAAAA-TCGGT-TCAGACCGGTTAGTTGAAGAATCAGATATTGTAAAT 1078
||| |||||||| |||| | ||| | ||||||| |||| || |||||||| |||||||||
Sbjct 995 GGAAATCGATGA-AAAAGTTGGTCT-AGACCGGCTAGTAGACGAATCAGACATTGTAAAT 1052
Query 1079 CTC-CATTATCTCCAAAACATTGTGTCAGAAACATTACGTTTGTATCCTGCGGTTCCACT 1137
||| | |||||||||||||||||| | ||||| ||||| |||| ||||| || |||||
Sbjct 1053 CTCTC-TTATCTCCAAAACATTGTATTGGAAACGCTACGTATGTACCCTGCAGTCCCACT 1111
Query 1138 ACTACTCCCTCATTTCTCATCGGATGAATGTAAAGT-GGCGGGCTACGATATGCCACGTC 1196
|||||| |||||||| ||||| || || |||||||| || || || ||||| ||| ||
Sbjct 1112 ACTACTACCTCATTTGTCATCAGAAGATTGTAAAGTTGGAGGA-TATGATATACCAAGTG 1170
Query 1197 GCACGTTGTTATTAACAAACGTATGGGCGATGCATAGAGATCCAG-GTTTATGGGAAGAG 1255
| || || | || || |||| |||||| |||||||||||||||| ||| |||||||||
Sbjct 1171 GAACAATGGTGTTGACCAACGCATGGGCCATGCATAGAGATCCAGAGTT-ATGGGAAGAT 1229
Query 1256 CCAGAGAGGTTCAAGCCGGAGAGGTTCGAGAAAGAAGGAGAGGCTCGA-AAGCTAATGC- 1313
|| |||| ||||||||||| || || || ||||||||||||||| || |||||| | |
Sbjct 1230 CCGGAGATATTCAAGCCGGAAAGATTTGAAAAAGAAGGAGAGGCT-GAGAAGCTATT-CT 1287
Query 1314 CGTTTGGGATGGGACGACGAGCTTGTCCTGGAGCTGAGCTTGGGA-AGCGGTTAGTGAGC 1372
| ||||||||||||||| |||||||||||||||| | ||| || | || || | | |
Sbjct 1288 CATTTGGGATGGGACGAAGAGCTTGTCCTGGAGCCGGGCT-GGCTCATAGGCTAATAAAC 1346
Query 1373 CTTGCTCTTGGGTGCTTGATTCAGTCTTTCGAGTGGGAGAGAGTTGGTGCAGAA-CTTGT 1431
|| |||||||| | |||||||| | ||| |||||||| |||||||||| || | |||||
Sbjct 1347 CTGGCTCTTGGAAGTTTGATTCAATGTTTTGAGTGGGAAAGAGTTGGTG-AGGAGCTTGT 1405
Query 1432 GGACATGACTGAAGGCGAAGGGATC-ACTAT-GCCTAAAGCTACT-CCGTT-GCGAGCTA 1487
||||||||| |||| | |||| | | || || ||| ||||||| | || || | |||| |
Sbjct 1406 GGACATGACCGAAGACAAAGG-AGCCAC-ATTGCCCAAAGCTA-TACCATTAG-GAGCCA 1461
Query 1488 TGTGCAAGGCACGTGCCATTGTTGGTAAA 1516
||||||| |||||| | ||||||||||||
Sbjct 1462 TGTGCAAAGCACGTTCTATTGTTGGTAAA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5