BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37330.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944125 jgi|Araly1|944125|scaffold_700354.1 2340 0.0
> Ahg944125 jgi|Araly1|944125|scaffold_700354.1
Length=1519
Score = 2340 bits (1267), Expect = 0.0
Identities = 1428/1508 (95%), Gaps = 2/1508 (0%)
Strand=Plus/Plus
Query 7 AGAGCCCCACAAACAAACAAAATGGATTTGAACCAAATCTTGATCCTCTCATTTCTCTCT 66
|||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 1 AGAGCCCC-CAAACAAACAAAATGGATTTGACCCAAATCTTGATCCTCTCTTTTCTGTCT 59
Query 67 CTTTTTACCTTAGCCATATTCTTGCTCACAAGATCCAAACGGAAACTAAACCTTCCTCCG 126
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 CTTTTTGCCTCCGCCATATTCTTGCTCACAAGATCCAAACGGAAACTGAACCTTCCTCCG 119
Query 127 TCGCCGGCGATCTCCTTGCCGGTGATCGGACACCTCCATCTCCTCAAGCCACCGCTTCAC 186
|| |||| |||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 120 TCTCCGGGGATCTCCTTGCCAGTGATCGGGCACCTCCACCTTCTCAAGCCACCGCTTCAC 179
Query 187 CGTACCTTCCTTTCCCTTTCCAAATCCATCGGAAATGCTCCGGTCTTCCATCTCCGACTC 246
|| || |||||||| |||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 180 CGGACGTTCCTTTCTCTTTCCCAATCCATCGGAAATGCTCCGATCTTCCATCTCCGCCTC 239
Query 247 GGAAATCGCCTCGTTTATGTCATCTCTTCACGTTCCATCGCTGAAGAATGTTTCACAAAG 306
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 240 GGAAATCGCCTCGTTTATGTCATCTCTTCACGTTCTATCGCCGAAGAATGTTTCACAACG 299
Query 307 AACGATGTCGTTCTCGCGAACCGCCCCAAGTTCACCATAAGTAAGCACCTCGGCTACAAC 366
||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||
Sbjct 300 AACGACGTCGTTCTCGCGAACCGTCCCAAGTTCACGATAAGCAAGCACGTCGGCTACAAC 359
Query 367 GCCACCTACTTACTCTCGGCATCTTACGGCGATCATTGGAGGAACCTCCGCCGCATAGCC 426
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GGCACCTACTTACTCTCTTCATCTTACGGCGATCATTGGAGGAACCTCCGCCGCATCGCC 419
Query 427 GCCGTCGAGATATTCTCCACTCATAGACTCAATTCGTTTCTGTATATTCGTAAGGACGAG 486
|||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 420 GCCGTCGAGATATTATCCACTCACAGACTCAATTCCTTTCTTTATATTCGTAAGGACGAG 479
Query 487 ATCCGACGGCTCATTTCACATCTCTCTCGTGATTCCTTACACGGATTTGTGGAGGTAGAG 546
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 ATCCGACGGCTCATTTCACATCTCTCTCGAGATTCCTTACACGGATTTGTGGAGGTAGAG 539
Query 547 ATGAAAACATTGTTAACCAATTTGGCATCCAACACCACCATCAGAATGTTGGCCGGGAAG 606
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGAAAACATTATTAACCAATTTGGCATCCAACACCACCATCAGAATGTTGGCCGGGAAG 599
Query 607 AGATATTTCGGTGAGGACAACGATGACGCTAAACTCGTGAAGAACCTTGTGTCGGAGGCG 666
|||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 600 AGATATTTTGGTGAGGACAACGATGAAGCTAAACTCGTGAAGCATCTTGTGTCGGAGGCG 659
Query 667 GTGACCAGCGCCGGTGCAGGAAACCCCATTGATTATCTTTCCATTTTACGTTGGGTCTCG 726
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 660 GTGACCAGCGCTGGTGCAGGAAACCCCATTGATTATCTTTCGATTTTACGTTGGGTCACG 719
Query 727 AGTTATGAAAAACGAATCAAGAATTTGGGAAATAGGTTTGATACGTTTTTGCAGAAATTA 786
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 720 AGTTATGAAAAACGAATCAAGAATTTGGGAAATAGGTTTGATGCGTTTTTGCAGCGATTA 779
Query 787 GTCGACGAAAAACGTGCGGAGAAGGAAAAAGGTGAAACTATGATCGATCACTTGCTTGCT 846
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCGACGAAAAACGTGCAGAAAAGGAAAAAGGTGAAACTATGATCGATCACTTGCTTGCT 839
Query 847 CTCCAAGACATTCAACCTGATTACTATACGGATGTCATCATCAAAGGAATCATACTTACC 906
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CTCCAAGACATTCAACCTGATTACTATACCGATGTCATCATCAAAGGAATCATACTTACT 899
Query 907 CTGATAATTGCAGGGACAGATACGTCATCAGTAACACTAGAATGGGCAATGTCAAATCTG 966
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTATAATTGCAGGGACAGATACGTCATCAGTAACACTAGAATGGGCAATGTCAAATCTG 959
Query 967 TTGAACCATCCAGAAATACTTAAGAAAGCGAGAATGGAAATCGATGAAAAAGTCGGTTTA 1026
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 960 TTGAACCATCCAGAAATACTTAAAAAAGCGAGAATGGAAATCGATGAAAAAGTTGGTCTA 1019
Query 1027 GACCGATTAGTAGACGAATCGGACATTGTAAATCTCTCTTATCTCCAAAGCATTGTATTG 1086
||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GACCGGCTAGTAGACGAATCAGACATTGTAAATCTCTCTTATCTCCAAAACATTGTATTG 1079
Query 1087 GAAACACTACGTATGTACCCGGCAGTCCCACTACTACTACCTCATTTGTCATCAGAAGAT 1146
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAACGCTACGTATGTACCCTGCAGTCCCACTACTACTACCTCATTTGTCATCAGAAGAT 1139
Query 1147 TGTAAAGTTGGAGGCTACGATATACCAAGTGGAACAATGGTATTGACCAACGCATGGGCC 1206
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1140 TGTAAAGTTGGAGGATATGATATACCAAGTGGAACAATGGTGTTGACCAACGCATGGGCC 1199
Query 1207 ATGCATAGAGATCCAGAGGTATGGGAAGATCCTGAGATATTCAAACCAGAAAGATTTGAA 1266
|||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1200 ATGCATAGAGATCCAGAGTTATGGGAAGATCCGGAGATATTCAAGCCGGAAAGATTTGAA 1259
Query 1267 AAAGAAGGAGAGGCTGAGAAGCTAATCTCATTTGGGATGGGACGAAGAGCTTGTCCTGGA 1326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 AAAGAAGGAGAGGCTGAGAAGCTATTCTCATTTGGGATGGGACGAAGAGCTTGTCCTGGA 1319
Query 1327 GCCGGGCTAGCTCATCGGCTAATAAACCAGGCTCTTGGAAGTTTGGTTCAATGTTTTGAG 1386
|||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1320 GCCGGGCTGGCTCATAGGCTAATAAACCTGGCTCTTGGAAGTTTGATTCAATGTTTTGAG 1379
Query 1387 TGGGAAAGAGTTGGTGAGGATTTTGTGGACATGACCGAAGACAAAGGAGCCACATTGCCC 1446
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGGAAAGAGTTGGTGAGGAGCTTGTGGACATGACCGAAGACAAAGGAGCCACATTGCCC 1439
Query 1447 AAAGCTATACCATTAAGAGCCATGTGCAAAGCACGTTCTATTGTTGATAAACTGATATAA 1506
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1440 AAAGCTATACCATTAGGAGCCATGTGCAAAGCACGTTCTATTGTTGGTAAACTGATTTAA 1499
Query 1507 ATGT-TTT 1513
|||| |||
Sbjct 1500 ATGTATTT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5