BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37340.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1 1249 0.0
Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1 1096 0.0
Ahg490885 jgi|Araly1|490885|fgenesh2_kg.7__318__AT4G37370.1 955 0.0
Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275 414 9e-115
Ahg925690 jgi|Araly1|925690|scaffold_201251.1 237 2e-61
> Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1
Length=1524
Score = 1249 bits (676), Expect = 0.0
Identities = 1246/1518 (82%), Gaps = 52/1518 (3%)
Strand=Plus/Plus
Query 90 TCAAACCCTAATTTTCACATTCCTTTTCAT-ATCTCTTTCTCTCACGTTTATCATCGGAA 148
||||||||||||| ||||| |||| || | ||| || ||||||| | ||||| ||
Sbjct 36 TCAAACCCTAATTCTCACAATCCTAATCCTAATC-CTCACTCTCACATACCTCATC-AAA 93
Query 149 GAA-TCAAGCGAAGACCTAACCTTCCTCCGA-GTCCGTCGTGGGC-GTTACCGGTGATCG 205
|| |||| | || ||| || |||||||| | ||| ||| | || || | || |
Sbjct 94 AAACTCAAACCAAAACCAAATCTTCCTCC-ATCTCCACCGTTCTCACTT-CCAATCATTG 151
Query 206 GTCACCTCCGCCTTCTCAAGCCGCCACTCCACCGAGTTTTTCT-ATCCGTCTCTGAGTCC 264
| ||||||||||||||||| || || |||||||| ||||| || | || ||||| | |||
Sbjct 152 GCCACCTCCGCCTTCTCAAACCACCGCTCCACCGCGTTTTCCTCA-CCATCTCTAAATCC 210
Query 265 CTAGGCGATGCTCCGATAATCTCCCTCCGTCTCGGCAACCGACTCGTTTTCGTTGTCTCT 324
||| | || ||||||| |||||||||||||||| ||| |||||||||||| ||||||
Sbjct 211 CTAAACAATTCTCCGATCTTCTCCCTCCGTCTCGGAAACAAACTCGTTTTCGTCGTCTCT 270
Query 325 TCACACTCACTCGCCGAGGAATGCTTCAC-AAAGAACGACGTCGTACTCGCGAACCGCTT 383
||| || || ||| ||| ||||||||||| ||| ||||||||||| |||||||| || |
Sbjct 271 TCAAACCCAATCGTCGAAGAATGCTTCACGAAA-AACGACGTCGTTCTCGCGAATCG-TC 328
Query 384 C-AACTCCCTTGCTTCAAAACACATCTCATATGGCTGCACAACGGTTGT-TACAGCTTCG 441
| || || ||||||| ||||| ||||| || | | || | | || | ||||| ||
Sbjct 329 CAAAATCAATTGCTTCTAAACATATCTCGTACAATTACTCATCTATGGTCT-CAGCTCCG 387
Query 442 TACGGCGACCATTGGAGAAATCTCCGCCGTATTGGCGCTGTTGAGATATTCTCGGCTCAC 501
|| | || ||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 388 TATAGTGAACATTGGAGAAATCTCCGCCGTATCGGCGCTGTCGAGATTTTCTCCAATCAC 447
Query 502 CGTCTCAATAGCTTTTCATCTATCCGCCGAGACGAGATCCACCGGCTTATAGCTT-GTCT 560
|| || ||||||||||| ||||||||||| |||||| || || ||||||| || ||||
Sbjct 448 CGGCTTAATAGCTTTTCCTCTATCCGCCGGGACGAGGCCCGGCGACTTATAG-TTCGTCT 506
Query 561 CTCACGGAACTCTTCACTCGAATTTACAAAGGTTGAGATGAAATCAATGTTTTCTAACTT 620
||| | |||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 507 CTCTCAGAACTCTTCACTGGAATTCACAAAGGTTGAGATGAATTCAATGTTATCTAATTT 566
Query 621 AACATTCAACAACATTATAAGAATGTTGGCTGGAAAATGTTACTACGGAGATGGTGCAGA 680
| ||||||| |||||||| |||||| || |||||||||||||||| ||||||||||||||
Sbjct 567 AGCATTCAATAACATTATTAGAATGGTGACTGGAAAATGTTACTATGGAGATGGTGCAGA 626
Query 681 GGATGACCCGGAGGCTAAACGCGTGCGGGAGCTTATAGCAGAGG-GAATGGGTTGTTTTG 739
|||||| |||||||||||||||||||| ||||||| || |||| | ||| |||||||||
Sbjct 627 GGATGATGCGGAGGCTAAACGCGTGCGGCAGCTTATCGCGGAGGCG-ATGAGTTGTTTTG 685
Query 740 GTGCTGGAAACACTGCTGATTATTTACCGATCCTGACTTGGATCACAGGTTCCGAGAAAC 799
|||| ||| || | |||||| |||||||| || ||| ||||| ||||||| ||||| |
Sbjct 686 GTGCCGGACACGCGGCTGATCATTTACCGGTCTTGAGATGGATTACAGGTTTCGAGAGGC 745
Query 800 GGATAAAGAAGATCGCTAGTAGGCTTGATGAGTTCTTGCAGGGATTGGTCGATGA-AAGA 858
|| |||||||||| || ||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 746 GGGTAAAGAAGATTTCTGGTAGGCTTGATGAGTTCTTCCAGGGATTGGTTGATGAGAA-A 804
Query 859 CGAGAAGGGAAGGAGAAAAGGCAGAACACAATGGTTGATCACTTGCTTTGTCTGCAAGAA 918
|||| || || | ||||||| |||| || ||| ||||||||||||||| | ||||||||
Sbjct 805 CGAG-CGGCAAAG-GAAAAGG-AGAATACGATGATTGATCACTTGCTTTCTTTGCAAGAA 861
Query 919 ACCCAACCCGAGTACTACACGGACAACATTATCAAAGGAATC-ATGCTCTCTCTTATACT 977
||||||| ||||||||||| ||| ||| ||| ||||||| | ||||| |||||||||||
Sbjct 862 TCCCAACCTGAGTACTACACAGACCACACTATTAAAGGAA-CTATGCTTTCTCTTATACT 920
Query 978 AGCGGGGACTGATACATCCGCAGTAACATTGGAATGGACATTGTC-AGCTTTGTTGAACC 1036
|||||||| |||||||| || ||||||||||||||| ||||| | ||| |||||||||
Sbjct 921 TGCGGGGACAGATACATCAGCGGTAACATTGGAATGGGCATTGGCGAGC-CTGTTGAACC 979
Query 1037 AT-CC-ACAGATACTAAGCAAGGCGAGAGATGAAATCGATAATAAGGTTGGCCTCA-ACA 1093
|| || | || |||||| |||||||||||||||||||| ||||| |||| || | ||
Sbjct 980 ATCCCGA-AG-TACTAAAAAAGGCGAGAGATGAAATCGACAATAAAATTGG-CTTAGACG 1036
Query 1094 GGCTTGTAGAGGAATCAGAC-CTCTCACATCTTCCTTATCTTCAAAACATTGTGTCCG-A 1151
||||| | || ||||||||| || || |||||||||||||||| |||||||| || | |
Sbjct 1037 GGCTTTTGGAAGAATCAGACGTTC-CAAATCTTCCTTATCTTCAGAACATTGTCTCTGAA 1095
Query 1152 GTCGTTGCGCTTATACCCTGCGA-GTCCCTTGTTGGTTCCTCACGTAGCATCAGAAGACT 1210
| ||||||||| ||||| || | | ||||||| || || ||||| |||||||||||||
Sbjct 1096 AT-GTTGCGCTTGTACCCCGC-AGGGCCCTTGTCCGTCCCGCACGTCGCATCAGAAGACT 1153
Query 1211 GTAAAGTAGGGGGTTACCATATGCCACGTGGAACGATGCTATTGACT-AATGCATGGGCA 1269
||||||| || |||||| ||||||| ||||| |||||| | ||| | |||| |||||
Sbjct 1154 GTAAAGTCGGAGGTTACGATATGCCGCGTGGCACGATGTTGTTG-GTGAATGTGTGGGCT 1212
Query 1270 ATACATAGGGATCCTAAGATATGGGATGATCCAACGAGCTTCAAACCAGAGAGGTTCGAG 1329
|||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1213 ATACATAGAGATCCTAAGCTATGGGATGATCCCACGAGTTTCAAGCCAGAGAGGTTCGAG 1272
Query 1330 AAAGAAGGGGAGGCTCAGAAGCTATTGGGGTTTGGGCTAGGAAGAAGGGCGTGTCCTGGG 1389
|||||||| || |||| |||||| ||| ||| ||| |||||||||| |||||||| |||
Sbjct 1273 AAAGAAGGAAAGACTCATAAGCTACTGGCGTTCGGGTTAGGAAGAAGAGCGTGTCCAGGG 1332
Query 1390 TCCGGTCTGGCTCAACGGCTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAG 1449
||||| |||||||||||||||| |||||||| | ||||||||||||||||||| |||||
Sbjct 1333 TCCGGACTGGCTCAACGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATGCTTTGAA 1392
Query 1450 TGGGAGAGGATAGGAGAAGAAGAGGTGGATATGACTGAAGGTGGAGGAGGAGTCA-TAAT 1508
||||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1393 TGGGAGAGGATTGGAGAAGAAGAGGTGGATATGACTGAAGGTGGAGGAC---TCACTA-T 1448
Query 1509 GCCCA-AAGCTATACCGTTGGTAGCCATGTGCAAAGCACGCCCCGTTGTTGGTAAGATCC 1567
||| | || ||| ||| ||||||||||| |||| |||||| || |||||||||| |||
Sbjct 1449 GCCTAGAA-CTAGACCTTTGGTAGCCATATGCAGAGCACGTGCCTTTGTTGGTAAAATCA 1507
Query 1568 T-CAACGAGTCCGCTTGA 1584
| || |||||||||||||
Sbjct 1508 TACA-CGAGTCCGCTTGA 1524
> Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1
Length=1336
Score = 1096 bits (593), Expect = 0.0
Identities = 738/807 (91%), Gaps = 14/807 (2%)
Strand=Plus/Plus
Query 807 GAAGATCGCTAGTAGGCTTGATGAGTTCTTGCAGGGATTGGTCGATGA-AAGACGAGAAG 865
|||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 537 GAAGATCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGATGAGAA-ACGAGAAG 595
Query 866 GGAAGGAGAA-A---AGGCAGAACACAATGGTTGATCACTTGCTTTGTCTGCAAGAAACC 921
|||||||||| | ||| |||||| |||||| |||||||||||| ||| |||||||||
Sbjct 596 GGAAGGAGAAGAGGGAGG-AGAACATAATGGTCGATCACTTGCTTCGTCAGCAAGAAACA 654
Query 922 CAACCCGAGTACTACACGGACAACATTATCAAAGGAATCATGCTCTCTCTTATACTAGCG 981
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 655 CAATCCGAGTACTACACGGACAACATTATCAAAGGGATCATGCTCTCTCTTATATTGGCG 714
Query 982 GGGACTGATACATCCGCAGTAACATTGGAATGGACATTGTC-AGCTTTGTTGAACCATCC 1040
||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 715 GGGACAGATACATCAGCAGTAACATTGGAATGGACATTGTCGAGC-TTGTTGAACCATCC 773
Query 1041 ACAGATACTAAGCAAGGCGAGAGATGAAATCGATAAT-AAGGTTGGCCTCAACAGGCTTG 1099
| |||||||||||||||||||||| |||||||| ||| || || || || |||||||
Sbjct 774 AAAGATACTAAGCAAGGCGAGAGAAGAAATCGACAATGAA-GTAGG-CT--TTAGGCTTG 829
Query 1100 TAGAGGAATCAGACCTCTCACATCTTCCTTATCTTCAAAACATTGTGTCCGAGTCGTTGC 1159
| || |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct 830 TGGAAGAATCAGACCTCTCACGTCTTCCTTATCTTCAGAACATTGTGTATGAGTCGTTGC 889
Query 1160 GCTTATACCCTGCGAGTCCCTTGTTGGTTCCTCACGTAGCATCAGAAGACTGTAAAGTAG 1219
| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 890 GTTTATACCCTGCAAGTCCCTTGTTGGTCCCTCACGTGGCATCAGAAGACTGTAAAGTAG 949
Query 1220 GGGGTTACCATATGCCACGTGGAACGATGCTATTGACTAATGCATGGGCAATACATAGGG 1279
|||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||| ||||
Sbjct 950 GGGGTTACGATATGCCACGTGGAACGATGTTATTGACTAATGCCTGGGCTATACACAGGG 1009
Query 1280 ATCCTAAGATATGGGATGATCCAACGAGCTTCAAACCAGAGAGGTTCGAGAAAGAAGGGG 1339
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1010 ATCCTAAGATATGGGATGATCCAACGAATTTTAAACCAGAGAGGTTCGAGAAAGAAGGGG 1069
Query 1340 AGGCTCAGAAGCTATTGGGGTTTGGGCTAGGAAGAAGGGCGTGTCCTGGGTCCGGTCTGG 1399
||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1070 AGGCTCATAAGCTAATGGGGTTCGGGCTAGGAAGAAGGGCATGTCCTGGGTCCGGTCTAG 1129
Query 1400 CTCAACGGCTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGA 1459
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTCAATGGCTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGG 1189
Query 1460 TAGGAGAAGAAGAGGTGGATATGACTGAAGGTGGAGGAGGAGTCATAATGCCCAAAGCTA 1519
| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1190 TTGGTGAAGAAGAGGTGGATATGAGTGAAGGTGGCGGAGGAGTCATAATGCCCAAAGCTA 1249
Query 1520 TACCGTTGGTAGCCATGTGCAAAGCACGCCCCGTTGTTGGTAAGATCCTCAACGAGTCCG 1579
||||||||||||||||||||| |||||| || |||||||||| || |||||||||||||
Sbjct 1250 TACCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGTAAAATACTCAACGAGTCCG 1309
Query 1580 CTTGAGCTTAGACTTTTGTACTAAATG 1606
|||||| ||||||||||||||||||||
Sbjct 1310 CTTGAGTTTAGACTTTTGTACTAAATG 1336
Score = 558 bits (302), Expect = 4e-158
Identities = 376/412 (91%), Gaps = 4/412 (1%)
Strand=Plus/Plus
Query 190 GCGTTACCGGTGATCGGTCACCTCCGCCTTCTCAAGCCGCCACTCCACCGAGTTTTTCTA 249
|||||||||||||| ||||||||||||||||||||||| || |||||| | ||||| ||
Sbjct 1 GCGTTACCGGTGATTGGTCACCTCCGCCTTCTCAAGCCACCGCTCCACGGGGTTTTCCTC 60
Query 250 TCCGTCTCTG-AGTCCCTAGGCGATGCTCCGATAATCTCCCTCCGTCTCGGCAACCGACT 308
|||||||| | | ||||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 61 TCCGTCTC-GCAATCCCTAGGCGACACTCCGATCATCTCCCTCCGTCTTGGCAACCGACT 119
Query 309 CGTTTTCGTTGTCTCTTCACACTC-ACTCGCCGAGGAATGCTTCACAAAGAACGACGTCG 367
||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| ||||
Sbjct 120 GGTTTTCGTTGTCTCTTCACACTCGA-TCGCCGAGGAATGTTTCACCAAGAACGATGTCG 178
Query 368 TACTCGCGAACCGCTTCAACTCCCTTGCTTCAAAACACATCTCATATGGCTGCACAACGG 427
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 179 TACTCGCGAACCGCTTTAACTCCCTTGCTTCAAAACACATCTCATATGGCTGCACCACCG 238
Query 428 TTGTTACAGCTTCGTACGGCGACCATTGGAGAAATCTCCGCCGTATTGGCGCTGTTGAGA 487
| ||||||||||||||| ||||||| |||||||||||||| | ||||||| ||||||||
Sbjct 239 TGGTTACAGCTTCGTACAGCGACCACTGGAGAAATCTCCGACACATTGGCGTTGTTGAGA 298
Query 488 TATTCTCGGCTCACCGTCTCAATAGCTTTTCATCTATCCGCCGAGACGAGATCCACCGGC 547
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 TATTCTCGGCTCACCGGCTCAATAGCTTTTCATCTATCCGCCGAGACGAGATCCAGCGGC 358
Query 548 TTATAGCTTGTCTCTCACGGAACTCTTCACTCGAATTTACAAAGGTTGAGAT 599
||||| |||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 359 TTATAACTTGTCTCTCACGGAACTCTTCACTCGAATTTGCCAAGGTCGAGAT 410
Score = 193 bits (104), Expect = 4e-48
Identities = 120/128 (94%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 642 AATGTTGGCTGGAAAATGTTACTACGGAGATGGTGCAGAGGATGACCCGGAGGCTAAACG 701
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 AATGGTGGCTGGAAAATGTTACTACGGAGACGGTGCAGAGGATGACCCGGAGGCTAAACG 470
Query 702 CGTGCGGGAGCTTATAGCAGAGGGAATGGGTTGTTTTGGTGCTGGAAACACTGCTGATTA 761
| | ||||||||||| |||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 471 CATACGGGAGCTTATCGCAGAGGGGATGAGTTGTTTTGGTGCCGGAAACACTGCTGATTA 530
Query 762 TTTACCGA 769
||||||||
Sbjct 531 TTTACCGA 538
> Ahg490885 jgi|Araly1|490885|fgenesh2_kg.7__318__AT4G37370.1
Length=1539
Score = 955 bits (517), Expect = 0.0
Identities = 1227/1560 (79%), Gaps = 87/1560 (6%)
Strand=Plus/Plus
Query 78 AAATATGGAAGGTC-AAACCCTAATTT--TCACATTCCTTTTCA-TATCTCTTTCTCTCA 133
||| |||||| || ||| |||||||| ||| ||| || |||| ||| | | |||||||
Sbjct 1 AAACATGGAA-ATCAAAATCCTAATTTCCTCA-ATT-CTCTTCATTAT-TATCTCTCTCA 56
Query 134 CG-TT-TATCATCGGAAGAATCA-AGCG-AAGACCTAACCTTCCTCCGAGTCCGTCGTGG 189
| || | | ||||||| ||||| | || ||| || || ||||||||||||||| | |||
Sbjct 57 -GATTCT-TGATCGGAAAAATCATA-CGAAAG-CCAAATCTTCCTCCGAGTCCGGCATGG 112
Query 190 GCGTTACCGGTGATCGGTCACCTCCGCCTTCTCAAGCCGCC-ACTCCACCG-AGTTTTTC 247
||||||||||||| ||||| ||||| || ||||| || || | | | || | ||| |
Sbjct 113 TCGTTACCGGTGATTGGTCATCTCCGTCTCCTCAAACCACCGA-TTTATCGCA-CTTTCC 170
Query 248 TATC-CGTCTCTGAGTCCCTAGGCGATGCTCCGATAATCTCCCTCCGTCTCGGCAACCGA 306
| || | | ||| | |||||| | |||||||||| |||||||||| ||||| ||||||
Sbjct 171 TTTCAC-TTTCTCAATCCCTAAACAATGCTCCGATCTTCTCCCTCCGACTCGGTAACCGA 229
Query 307 CTCGTTTTCGTTG-TCTCTTCACACTC-ACTCGCCGAGGAATGCTTCACAAAGAACGACG 364
|||||||||| || ||| || ||||| | ||||||||||||| ||||| ||||||||||
Sbjct 230 CTCGTTTTCG-TGAACTCGTCGCACTCGA-TCGCCGAGGAATGTTTCACCAAGAACGACG 287
Query 365 TCGTACTCGCGAACC-GCTTC-AAC-TC--CCTTGCTTCAAAACACATCTCATATGGCTG 419
|||||||||| |||| || | ||| || ||| || | |||||| || | || | |
Sbjct 288 TCGTACTCGCAAACCGGC--CAAACTTCATCCTCGC-T--AAACACGTCGCGTACGATTA 342
Query 420 CACAACGGTTG-TTACAGCTTCGTACGGCGACCATTGGAGAAATCTCCGCCGTATTGGCG 478
|||||| || | ||||||| ||||| ||||| ||| | || |||||||| || |||
Sbjct 343 CACAAC-CATGATCGCAGCTTCTTACGGTGACCACTGGCGTAACCTCCGCCGCATCGGCT 401
Query 479 CTGTTGAGATATTCTCGGCTCACCGTCTCAATAGCTTTTC-ATCTATCCGCCGAGACGAG 537
| || ||||||||||| |||||| || || ||| |||| |||| | || |||||||
Sbjct 402 CCGTCGAGATATTCTCCAATCACCGGCTTAACAGC-TTTCTATCTGTTCGTAAAGACGAG 460
Query 538 ATCCACCGGCTTATAGCTT-GTCTCTCACGGAACTCTTCACTCGAATTTACAAAGGTTGA 596
|||| || ||| | | || |||| || ||||||| ||||| || ||| ||||| ||
Sbjct 461 ATCCGGCGACTTGT-GTTTCGTCTTTCTCGGAACTTTTCACAAGAGTTTGTGAAGGTGGA 519
Query 597 GATGAAATCAATGTTTTCTAACTTAACATTCAACAACATTATAAGAATGTTGGCTGGAAA 656
||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 520 GATGAAATCGATGTTATCTGACTTAACATTCAACAACATTATAAGAATGGTGGCCGGAAA 579
Query 657 ATGTTACTACGGAGATGGTGCAGAGGATGACCCGGAGGCTAAACGCGTGCGGGAGCTTAT 716
| ||||||||||||| |||| |||||||| |||||||||||||| || ||| |||||||
Sbjct 580 ACGTTACTACGGAGACGGTGTTGAGGATGATCCGGAGGCTAAACGAGTCCGGCAGCTTAT 639
Query 717 AGCAGA-G-GGAATGGGTTGTTTTGGTGCTGGAAACACTGCTGATTATTTACCGATCCTG 774
|| || | || | | |||| |||||| |||||| ||| ||||||||||||||| ||
Sbjct 640 TGCGGATGTGGTA-GC-TTGTGCTGGTGCCGGAAACGCTGTTGATTATTTACCGATTTTG 697
Query 775 AC--TTGGATCACAGGTTCCGAGAAACGGATAAAGAAGATCGCTAGTAGGCTTGATGAGT 832
| || | || ||| || ||||| |||| | |||||| | || ||||||| || ||||
Sbjct 698 -CGGTTAG-TCTCAGATTACGAGACACGGGTTAAGAAGTTGGCGGGTAGGCTCGACGAGT 755
Query 833 TCTTGCAGGGATTGGTCGATGA-AAGACGAGAAGGGAAGGAGAAAAGGCAGAACACAATG 891
||||||| |||||||| || || || |||||||| ||||||||| || | ||||| |||
Sbjct 756 TCTTGCAAGGATTGGTTGACGAGAA-ACGAGAAGCTAAGGAGAAA-GG-A-AACACGATG 811
Query 892 GTTGATCACTTGCTTTGTCTGCAAGAAACCCAACCCGAGTACTACACGGA-CAACATTAT 950
| |||||||||||| ||| |||||| ||||||| || |||| ||| || | || ||
Sbjct 812 ATCGATCACTTGCTTACTCTCCAAGAATCCCAACCGGATTACTTCACTGATCGT-ATCAT 870
Query 951 CAAAGGAATCATGCTCTC-TCTT-ATACTAGCGGGGACTGATACATCCGCAGTAACATTG 1008
|||||||| |||||| | | || |||||||| ||||| || ||||| || || || ||
Sbjct 871 CAAAGGAAACATGCT-TGGT-TTGATACTAGCAGGGACCGACACATCAGCGGTTACGTTA 928
Query 1009 GAATGGACATTGTC-AGCTTTGTTGAACCATCCACAGATACT-AAGCAAGGCGAGAGATG 1066
|||||| ||||||| | | | |||||||||||| || || | || ||||||||||||||
Sbjct 929 GAATGGGCATTGTCGAACCT-GTTGAACCATCCGGAGGTATTGAA-CAAGGCGAGAGATG 986
Query 1067 AAATCGATA-ATAAGGTTGGCCTCA-ACAGGCTTGTAGAGGAATCAGACCTCTCACATCT 1124
||||||||| | ||| | || | | |||||||| | || ||||||||| ||||| ||||
Sbjct 987 AAATCGATAGA-AAGATAGGTTT-AGACAGGCTTATGGACGAATCAGACATCTCAAATCT 1044
Query 1125 TCCTTATCTTCAAAACATTGTGTCCGAGTCGTTGCGC-TTATACCCTGCGAGT-CCCTTG 1182
|| ||||| ||||||||||| || || |||||||| || || |||||| || ||| ||
Sbjct 1045 GCCATATCTCCAAAACATTGTATCTGAAACGTTGCGCCTT-TATCCTGCG-GTTCCCATG 1102
Query 1183 -TTGGTTCCTCACGTAGCATCAGAAGACTGTAAAGTAGGGGGTTACCATATGCCACGTGG 1241
|| |||||||||| || || || || |||||||| | || || ||||||| |||||
Sbjct 1103 CTTC-TTCCTCACGTTGCCTCGGAGGATTGTAAAGTTGCAGGATATGATATGCCGCGTGG 1161
Query 1242 AACGATGCTATTGACTAATGCATGGGCAATACATAGGGATCCTAAGATATGGGATGATCC 1301
|||||||||||||| ||||||||||| ||||| || |||||| | |||||||||||||
Sbjct 1162 CACGATGCTATTGACCAATGCATGGGCTATACACAGAGATCCTCGGCTATGGGATGATCC 1221
Query 1302 AACGAGCTTCAAACCAGAGAGGTTCGAGAAAGAAGGGGAGGCTCAGAAGCTATTGGGGTT 1361
|| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| || |||
Sbjct 1222 AATGAGCTTCAAGCCAGAGAGGTTTGAGAAAGAAGGAGAGGCTCAGAAGCTAATGCCGTT 1281
Query 1362 TGGGCTAGGAAGAAGGGCGTGTCCTGGGTCCGGTCTGGCTCAACGGCTAGCGAGCTTGAC 1421
|||| |||||||||||||||||||||| || || |||||||| |||||| | | ||||
Sbjct 1282 TGGGTTAGGAAGAAGGGCGTGTCCTGGTTCTGGACTGGCTCATCGGCTAATAAACCTGAC 1341
Query 1422 TATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATAGGAGAAGAAGAGGTGGATAT 1481
||| || || |||||||| ||||| || ||| ||||||| ||||| ||||| ||||||||
Sbjct 1342 TATTGGATCATTGATTCAGTGTTTGGAATGGAAGAGGATTGGAGATGAAGAAGTGGATAT 1401
Query 1482 GACTGAAGGTGGAGGAGGAGTCATAATGCCCAAAGCTATACCGT-TGGTAGCCATGTGCA 1540
|| |||||| | |||| | | |||||| ||||| || || | | | |||||||||||
Sbjct 1402 GAGTGAAGGCA-A--AGGACTTACAATGCCTAAAGCCATGCC-TCTCGAAGCCATGTGCA 1457
Query 1541 AAGCACGCCCCGT-TGTTGGTAAGA-TCCTCAACGAGTCCGCTTGAGCTT--AGACTTTT 1596
|||||| || | ||||| ||| | || |||||||| |||||||| ||| ||||||||
Sbjct 1458 GAGCACGTGCC-TCTGTTGTTAA-ACTCTTCAACGAGGCCGCTTGA-CTTTTAGACTTTT 1514
> Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275
Length=609
Score = 414 bits (224), Expect = 9e-115
Identities = 351/411 (85%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 1177 CCCTTGTTGGTTCCTCACGTAGCATCAG-AAGACTGTAAAGTAGGGGGTTACCATATGCC 1235
||| || || |||||||||| || || | |||| |||||||| | ||| ||| |||||||
Sbjct 205 CCCATGCTGCTTCCTCACGTCGCCTC-GAAAGATTGTAAAGTTGCGGGATACGATATGCC 263
Query 1236 ACGTGGAACGATGCTATTGACTAATGCATGGGCAATACATAGGGATCCTAAGATATGGGA 1295
|| ||| |||||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 264 ACATGGCACGATGCTATTGACTAATGCATGGGCTATACATAGGGATCCTCGGCTATTGGA 323
Query 1296 TGATCCAACGAGCTTCAAACCAGAGAGGTTCGAGAAAGAAGGGGAGGCTCAGAAGC-TAT 1354
||||||||| ||| |||| ||||||||||||||||||| ||| |||||||| |||| ||
Sbjct 324 TGATCCAACTAGCCTCAATCCAGAGAGGTTCGAGAAAGGAGGAGAGGCTCATAAGCTTA- 382
Query 1355 TGGGGTTTGGGCTAGGAAGAAGGGCGTGTCCTGGGTCCGGTCTGGCTCAACGGCTAGCGA 1414
|| ||| |||||||| ||| |||| ||||||||||||||| ||||||| ||||||| ||
Sbjct 383 TGCCGTTCGGGCTAGGTAGACGGGCATGTCCTGGGTCCGGTTTGGCTCAGCGGCTAGTGA 442
Query 1415 GCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATAGGAGAAGAAGAGG 1474
||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 443 CCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAGG 502
Query 1475 TGGATATGACTGAAGGTGGAGGAGGAGTCA-TAATGCCCAAAGCTATACCGTTGGTAGCC 1533
| ||||||||||||||||||||| ||| || |||| |||| ||||||||||||||||
Sbjct 503 TTGATATGACTGAAGGTGGAGGAC---TCACTA-TGCCTAAAGGTATACCGTTGGTAGCC 558
Query 1534 ATGTGCAAAGCACGCCCCGTT-GTTGGTAAGATCCTCAAC-GAGTCCGCTT 1582
||||||| |||||| || || |||||||| ||| | | | ||||| ||||
Sbjct 559 ATGTGCAGAGCACGTGCC-TTCGTTGGTAAAATCTT-ACCCGAGTCTGCTT 607
> Ahg925690 jgi|Araly1|925690|scaffold_201251.1
Length=299
Score = 237 bits (128), Expect = 2e-61
Identities = 214/255 (84%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 1348 AAGCTATTGGGGTTTGGGCTAGGAAGAAGGGCGTGTCCTGGGTCCGGTCTGGCTCAACGG 1407
|||||| | | ||| ||| |||||||||| || |||||||||||||| ||||||||||||
Sbjct 45 AAGCTACTAGCGTTCGGGTTAGGAAGAAGAGCTTGTCCTGGGTCCGGACTGGCTCAACGG 104
Query 1408 CTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATAGGAGAA 1467
|||| |||||||| | ||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 105 CTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATGCTTTGAATGGGAGAGGATTGGAGAA 164
Query 1468 GAAGAGGTGGATATGACTGAAGGTGGAGGAGGAGTCATAATGCCCAAAGCTATACCGTTG 1527
|||||||||||||||||||||||||||||| ||| |||||| | ||||| ||| |||
Sbjct 165 GAAGAGGTGGATATGACTGAAGGTGGAGGAC---TCACAATGCCTAGAGCTAGACCTTTG 221
Query 1528 GTAGCCATGTGCAAAGCACGCCCCGTTGTTGGTAAGATCCT-CAACGAGTCCGCTTGAGC 1586
|||||||||||| |||||| || ||||||| || || || || ||||| | ||||
Sbjct 222 GTAGCCATGTGCCGAGCACGTGCCTTTGTTGGAAAAATTCTACAT-GAGTCTGGTTGATT 280
Query 1587 TTAG-A-CTTTTGTA 1599
|| | | ||||||||
Sbjct 281 TT-GTAACTTTTGTA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5