BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37360.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475761 jgi|Araly1|475761|fgenesh2_kg.2__891__AT1G66540.1 1160 0.0
Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1 1149 0.0
Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1 741 0.0
Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275 558 3e-158
Ahg925690 jgi|Araly1|925690|scaffold_201251.1 270 2e-71
> Ahg475761 jgi|Araly1|475761|fgenesh2_kg.2__891__AT1G66540.1
Length=1572
Score = 1160 bits (628), Expect = 0.0
Identities = 1150/1400 (82%), Gaps = 43/1400 (3%)
Strand=Plus/Plus
Query 121 ATCGGTCACCTCCGTCTTCTCAAGCCACCACTCCACCGTGTTTTCCTCTCCGTCTCTCAA 180
||||| |||||||| |||||||| ||||| ||||||||| | |||||| || ||||| ||
Sbjct 139 ATCGGCCACCTCCGCCTTCTCAAACCACCGCTCCACCGTATCTTCCTCACCATCTCTAAA 198
Query 181 TCTTTAGGCGACGCTCCGATCATCTCCCTCCGTCTCGGCAACCGACTCCTATTCGTTGTC 240
|| || | | |||||||| |||||||||||||||| ||| |||| | ||||| |||
Sbjct 199 TCCCTAAACAATTCTCCGATCTTCTCCCTCCGTCTCGGAAACAAACTCGTTTTCGTCGTC 258
Query 241 TCTTCACACTCAATCGCCGAGGAATGCTTCACGAAGAACGACGTCATACTCGCGAACCGA 300
|||||| ||||||||| ||| ||||||||||| || ||||||||| | |||||||| |||
Sbjct 259 TCTTCAAACTCAATCGTCGAAGAATGCTTCACCAAAAACGACGTCGTTCTCGCGAATCGA 318
Query 301 -CAAACCACCATTTCTACAAAACACATCTCATACGGCAACTCCA-CCGTGGTCTCTGCTT 358
|||| | ||| || | ||||||||||| ||| ||| || | ||||||| |||
Sbjct 319 CCAAA-GTCAATTGCTTCTAAACACATCTCGTACAATTACT-CATCTATGGTCTCAGCTC 376
Query 359 CGTACAGCGAACACTGGAGAAATCTCCGCCGCATCGGCGCCTTAGAGATTTTCT-CGGCT 417
|||| || ||||| ||||||||||||||||| ||||||||| | |||||||||| | | |
Sbjct 377 CGTATAGTGAACATTGGAGAAATCTCCGCCGTATCGGCGCCGTCGAGATTTTCTCCAG-T 435
Query 418 CATAGACTCAATAGCTTTTCCTCTATTCGCCGCGATGAGATCAGGAGGCTTATAGGCCGT 477
|| | || ||||||||||||||||| |||||||| ||| | || | ||||||| |||
Sbjct 436 CACCGGCTTAATAGCTTTTCCTCTATCCGCCGCGACGAGGCCCGGCGACTTATAGTTCGT 495
Query 478 CTCT-TACGGAACTCTTCTTA--CGGGTTTACTAAGGTTGAGATGAAATCAATGTTTTCT 534
|||| | | |||||| | ||| || ||| | |||||||||||||| ||| |||| |||
Sbjct 496 CTCTCT-CAGAACTC-T-TTACTCGAATTTGCAAAGGTTGAGATGAATTCAGTGTTATCT 552
Query 535 GACTTAACATTCAACAACATCATTAGAATGCTAG-CCGGAAAGTGTTACTATGGAGACGG 593
| ||| ||||||||||||| ||||||||| | | | ||||| |||||||||||||| ||
Sbjct 553 AATTTAGCATTCAACAACATTATTAGAATGGT-GACTGGAAAATGTTACTATGGAGATGG 611
Query 594 TAAAGAAGATGACCCGGAGGCCAAACGCGTGCGGAC-GCTTATCGCAGAGGCTATGAGTT 652
| ||| ||||| ||||||| |||||||||||| | ||||||||| ||||| |||||||
Sbjct 612 TGCAGAGGATGATGCGGAGGCTAAACGCGTGCGG-CAGCTTATCGCGGAGGCGATGAGTT 670
Query 653 CTTCTGGT-CCTGGAAACGCTGCTGATTATATACCGATCCTGACTTGGATCACATATTCC 711
|| |||| || ||| |||| |||||| || ||||| || ||| ||||| ||| || |
Sbjct 671 GTTTTGGTGCC-GGACACGCGGCTGATCATTTACCGGTCTTGAGATGGATTACAGGTTTC 729
Query 712 GAGACACGGATAAAGAAGCTCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGAT 771
|||| ||| |||||||| | ||||||||||||||||||||||| || |||||||| |||
Sbjct 730 GAGAGGCGGGTAAAGAAGATTGCTGGTAGGCTTGATGAGTTCTTCCAGGGATTGGTTGAT 789
Query 772 GAGAAACGAGAAGG-AAAGGAGAAGAAGGAGAACACGATGGTTGATCACTTGCTTTGTCT 830
|||||||||| || ||| | | |||||||||| |||||| ||||||||||||||| | |
Sbjct 790 GAGAAACGAG-CGGCAAA-G-G-AGAAGGAGAATACGATGATTGATCACTTGCTTTCTTT 845
Query 831 GCAAGAAACCCAACCAGAGTACTACATGGACCGCATCATCAAAGGAACCATGCTTTCTCT 890
||||||| ||||||| |||||||| | |||| || ||| |||||||| ||||| |||||
Sbjct 846 GCAAGAATCCCAACCTGAGTACTATACAGACCACACCATTAAAGGAACTATGCTCTCTCT 905
Query 891 TATAGC-AGGGGGGACTGATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGT 949
|||| | | |||||| |||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 906 TATA-CTTGCGGGGACAGATACATCAGCGGTAACATTGGAATGGGCATTGTCGAGCCTGT 964
Query 950 TGAACAATCCTGAGGTGCTGAACAAGGCCAGAGACGAGATCGAC-AGAATGATCGG-TGT 1007
||||| |||| || || || || ||||| ||||| || |||||| | || || || | |
Sbjct 965 TGAACCATCCCGAAGTACTAAAAAAGGCGAGAGATGAAATCGACAATAA-AATTGGCT-T 1022
Query 1008 AGACAGGCTTTTGGAGGAATCAGACATCCCAAATCTTCCTTATCTACAGAACATTGTATC 1067
||||||||||||||| ||||||||| | ||||||||||||||||| |||||||| || ||
Sbjct 1023 AGACAGGCTTTTGGAAGAATCAGACGTTCCAAATCTTCCTTATCTTCAGAACATCGTCTC 1082
Query 1068 TGAAACGTTACGTC-TGTACCCTGCA-GCCCCTATGCTGC-TTCCTCACGTAGCCTCGA- 1123
||||||||| || | ||||||| ||| | |||| || | | | || ||||| || || |
Sbjct 1083 TGAAACGTTGCG-CTTGTACCCCGCAGGGCCCT-TG-TCCGTCCCGCACGTCGCATC-AG 1138
Query 1124 AAGATTGTAAAGTTGGGGGATACGATATGCCGCGTGGGACGATGCTATTGACT-AATGCA 1182
||| ||||||||| || || ||||||||||||||||| |||||| | ||| | ||||
Sbjct 1139 AAGTTTGTAAAGTAGGAGGTTACGATATGCCGCGTGGCACGATGTTGTTG-GTGAATGTG 1197
Query 1183 TGGGCTATACACAGGGATCCCCTGCTATGGGATGATCCAACGAGCTTCAAGCCAGAGAGG 1242
||||||||||| || ||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1198 TGGGCTATACATAGAGATCCTAAGCTATGGGATGATCCGGCGAGTTTCAAGCCAGAGAGG 1257
Query 1243 TTCGAGAAAGAAGGAGAGGCTAAGAAGCTAAT-GCCGTTCGGGCTAGGAAGAAGGGCATG 1301
|||||||||||||||||| | | |||||| | || ||||||| |||||||||| || ||
Sbjct 1258 TTCGAGAAAGAAGGAGAGACGCATAAGCTACTAGC-GTTCGGGTTAGGAAGAAGAGCTTG 1316
Query 1302 TCCTGGATCCGGTTTGGCTCAGCGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAATG 1361
|||||| ||||| ||||||| |||||||||| |||||||||||||| ||||| |||||
Sbjct 1317 TCCTGGGTCCGGACTGGCTCAACGGCTAGTGAGTTTGAGTCTCGGGTCATTGATACAATG 1376
Query 1362 TTTTGAATGGGAGAGGATTGGAGAAGAAGAGGTCGATATGACTGAAGGTCCAGGACTCAC 1421
||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1377 TTTTGAATGGGAGAGGAATGGCGAAGAAGAGGTTGATATGACTGAAGGTGGAGGACTCAC 1436
Query 1422 AATGCCGAAAGCTAGA-CCGTTGGAAGCTATGTGCAGAGCACGTGACTTTGTTGGTAAAA 1480
||||| ||||||| | ||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 1437 TATGCCTAAAGCTA-ATCCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGTAAAA 1495
Query 1481 TCTTACCCGACTCCTCTTGA 1500
|| ||| ||| ||| |||||
Sbjct 1496 TCCTACACGAGTCCGCTTGA 1515
> Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1
Length=1524
Score = 1149 bits (622), Expect = 0.0
Identities = 1145/1395 (82%), Gaps = 45/1395 (3%)
Strand=Plus/Plus
Query 127 CACCTCCGTCTTCTCAAGCCACCACTCCACCGTGTTTTCCTCTCCGTCTCTCAATCTTTA 186
|||||||| |||||||| ||||| |||||||| ||||||||| || ||||| |||| ||
Sbjct 154 CACCTCCGCCTTCTCAAACCACCGCTCCACCGCGTTTTCCTCACCATCTCTAAATCCCTA 213
Query 187 GGCGACGCTCCGATCATCTCCCTCCGTCTCGGCAACCGACTCCTATTCGTTGTCTCTTCA 246
| | |||||||| |||||||||||||||| ||| |||| | ||||| |||||||||
Sbjct 214 AACAATTCTCCGATCTTCTCCCTCCGTCTCGGAAACAAACTCGTTTTCGTCGTCTCTTCA 273
Query 247 CACTCAATCGCCGAGGAATGCTTCACGAAGAACGACGTCATACTCGCGAACCG-AC-AAA 304
|| |||||| ||| |||||||||||||| ||||||||| | |||||||| || | |||
Sbjct 274 AACCCAATCGTCGAAGAATGCTTCACGAAAAACGACGTCGTTCTCGCGAATCGTCCAAAA 333
Query 305 CCACCATTTCTACAAAACACATCTCATACGGCAACTCCA-CCGTGGTCTCTGCTTCGTAC 363
|| ||| || | ||||| ||||| ||| ||| || | ||||||| ||| ||||
Sbjct 334 TCA--ATTGCTTCTAAACATATCTCGTACAATTACT-CATCTATGGTCTCAGCTCCGTAT 390
Query 364 AGCGAACACTGGAGAAATCTCCGCCGCATCGGCGCCT-TAGAGATTTTCTCGGCTCATAG 422
|| ||||| ||||||||||||||||| ||||||| || | ||||||||||| ||| |
Sbjct 391 AGTGAACATTGGAGAAATCTCCGCCGTATCGGCG-CTGTCGAGATTTTCTCCAATCACCG 449
Query 423 ACTCAATAGCTTTTCCTCTATTCGCCGCGATGAGATCAGGAGGCTTATAGGCCGTCTCT- 481
|| ||||||||||||||||| ||||| || ||| | || | ||||||| |||||||
Sbjct 450 GCTTAATAGCTTTTCCTCTATCCGCCGGGACGAGGCCCGGCGACTTATAGTTCGTCTCTC 509
Query 482 TACGGAACTCTTCTTAC-GG-GTTTACTAAGGTTGAGATGAAATCAATGTTTTCTGACTT 539
| | ||||||||| || || || || |||||||||||||| |||||||| ||| | ||
Sbjct 510 T-CAGAACTCTTC--ACTGGAATTCACAAAGGTTGAGATGAATTCAATGTTATCTAATTT 566
Query 540 AACATTCAACAACATCATTAGAATGCTAG-CCGGAAAGTGTTACTATGGAGACGGTAAAG 598
| ||||||| ||||| ||||||||| | | | ||||| |||||||||||||| ||| ||
Sbjct 567 AGCATTCAATAACATTATTAGAATGGT-GACTGGAAAATGTTACTATGGAGATGGTGCAG 625
Query 599 AAGATGACCCGGAGGCCAAACGCGTGCGGAC-GCTTATCGCAGAGGCTATGAGTTCTTCT 657
| ||||| ||||||| |||||||||||| | ||||||||| ||||| ||||||| || |
Sbjct 626 AGGATGATGCGGAGGCTAAACGCGTGCGG-CAGCTTATCGCGGAGGCGATGAGTTGTTTT 684
Query 658 GGT-CCTGGAAACGCTGCTGATTATATACCGATCCTGACTTGGATCACATATTCCGAGAC 716
||| || ||| |||| |||||| || ||||| || ||| ||||| ||| || |||||
Sbjct 685 GGTGCC-GGACACGCGGCTGATCATTTACCGGTCTTGAGATGGATTACAGGTTTCGAGAG 743
Query 717 ACGGATAAAGAAGCTCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGATGAGAA 776
||| |||||||| | |||||||||||||||||||||| || |||||||| ||||||||
Sbjct 744 GCGGGTAAAGAAGATTTCTGGTAGGCTTGATGAGTTCTTCCAGGGATTGGTTGATGAGAA 803
Query 777 ACGAGAAGG-AAAGGAGAAGAAGGAGAACACGATGGTTGATCACTTGCTTTGTCTGCAAG 835
||||| || ||| | ||| |||||||| |||||| ||||||||||||||| | ||||||
Sbjct 804 ACGAG-CGGCAAA-G-GAA-AAGGAGAATACGATGATTGATCACTTGCTTTCTTTGCAAG 859
Query 836 AAACCCAACCAGAGTACTACATGGACCGCATC-ATCAAAGGAACCATGCTTTCTCTTATA 894
|| ||||||| |||||||||| |||| || | || |||||||| |||||||||||||||
Sbjct 860 AATCCCAACCTGAGTACTACACAGACCACA-CTATTAAAGGAACTATGCTTTCTCTTATA 918
Query 895 GC-AGGGGGGACTGATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAA 953
| | |||||| |||||| |||||||||||||||||||||||||| | ||| |||||||
Sbjct 919 -CTTGCGGGGACAGATACATCAGCGGTAACATTGGAATGGGCATTGGCGAGCCTGTTGAA 977
Query 954 CAATCCTGAGGTGCTGAACAAGGCCAGAGACGAGATCGAC-AGAATGATCGG-TGTAGAC 1011
| |||| || || || || ||||| ||||| || |||||| | || || || | |||||
Sbjct 978 CCATCCCGAAGTACTAAAAAAGGCGAGAGATGAAATCGACAATAA-AATTGGCT-TAGAC 1035
Query 1012 AGGCTTTTGGAGGAATCAGACATCCCAAATCTTCCTTATCTACAGAACATTGTATCTGAA 1071
|||||||||| ||||||||| | ||||||||||||||||| ||||||||||| ||||||
Sbjct 1036 GGGCTTTTGGAAGAATCAGACGTTCCAAATCTTCCTTATCTTCAGAACATTGTCTCTGAA 1095
Query 1072 ACGTTACGTC-TGTACCCTGCA-GCCCCTATGCTGC-TTCCTCACGTAGCCTCGA-AAGA 1127
| ||| || | ||||||| ||| | |||| || | | | || ||||| || || | ||||
Sbjct 1096 ATGTTGCG-CTTGTACCCCGCAGGGCCCT-TG-TCCGTCCCGCACGTCGCATC-AGAAGA 1151
Query 1128 TTGTAAAGTTGGGGGATACGATATGCCGCGTGGGACGATGCTATTGACT-AATGCATGGG 1186
|||||||| || || ||||||||||||||||| |||||| | ||| | |||| ||||
Sbjct 1152 CTGTAAAGTCGGAGGTTACGATATGCCGCGTGGCACGATGTTGTTG-GTGAATGTGTGGG 1210
Query 1187 CTATACACAGGGATCCCCTGCTATGGGATGATCCAACGAGCTTCAAGCCAGAGAGGTTCG 1246
||||||| || ||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1211 CTATACATAGAGATCCTAAGCTATGGGATGATCCCACGAGTTTCAAGCCAGAGAGGTTCG 1270
Query 1247 AGAAAGAAGGAGAGGCTAAGAAGCTAATGCCGTTCGGGCTAGGAAGAAGGGCATGTCCTG 1306
||||||||||| || || | |||||| || |||||||| |||||||||| || ||||| |
Sbjct 1271 AGAAAGAAGGAAAGACTCATAAGCTACTGGCGTTCGGGTTAGGAAGAAGAGCGTGTCCAG 1330
Query 1307 GATCCGGTTTGGCTCAGCGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTG 1366
| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1331 GGTCCGGACTGGCTCAACGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATGCTTTG 1390
Query 1367 AATGGGAGAGGATTGGAGAAGAAGAGGTCGATATGACTGAAGGTCCAGGACTCACAATGC 1426
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 1391 AATGGGAGAGGATTGGAGAAGAAGAGGTGGATATGACTGAAGGTGGAGGACTCACTATGC 1450
Query 1427 CGA-AAGCTAGACCGTTGGAAGCTATGTGCAGAGCACGTGACTTTGTTGGTAAAATCTTA 1485
| | || ||||||| |||| ||| || ||||||||||||| |||||||||||||||| ||
Sbjct 1451 CTAGAA-CTAGACCTTTGGTAGCCATATGCAGAGCACGTGCCTTTGTTGGTAAAATCATA 1509
Query 1486 CCCGACTCCTCTTGA 1500
| ||| ||| |||||
Sbjct 1510 CACGAGTCCGCTTGA 1524
> Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1
Length=1336
Score = 741 bits (401), Expect = 0.0
Identities = 664/789 (84%), Gaps = 25/789 (3%)
Strand=Plus/Plus
Query 726 GAAGCTCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGATGAGAAACGAGAAGG 785
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAGATCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGATGAGAAACGAGAAGG 596
Query 786 AAAGGAGAAGA---AGGAGAACACGATGGTTGATCACTTGCTTTGTCTGCAAGAAACCCA 842
|||||||||| ||||||||| ||||| |||||||||||| ||| ||||||||| ||
Sbjct 597 GAAGGAGAAGAGGGAGGAGAACATAATGGTCGATCACTTGCTTCGTCAGCAAGAAACACA 656
Query 843 A-CCAGAGTACTACATGGACCGCATCATCAAAGGAACCATGCTTTCTCTTATAGCAGG-G 900
| || |||||||||| |||| ||| |||||||| | |||||| ||||||||| || |
Sbjct 657 ATCC-GAGTACTACACGGACAACATTATCAAAGGGATCATGCTCTCTCTTATA-TTGGCG 714
Query 901 GGGACTGATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAACAATCCT 960
||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 715 GGGACAGATACATCAGCAGTAACATTGGAATGGACATTGTCGAGCTTGTTGAACCATCCA 774
Query 961 GAGGTGCTGAA-CAAGGCCAGAGACGAGATCGACAGAATG-A-TCGGTGTAGACAGGCTT 1017
|| | || || |||||| ||||| || |||||| |||| | | || | ||||||
Sbjct 775 AAGATACT-AAGCAAGGCGAGAGAAGAAATCGAC--AATGAAGTAGG-CT--TTAGGCTT 828
Query 1018 TTGGAGGAATCAGACATCCCAAATCTTCCTTATCTACAGAACATTGTATCTGAAACGTTA 1077
|||| ||||||||| || || |||||||||||| ||||||||||| | ||| ||||
Sbjct 829 GTGGAAGAATCAGACCTCTCACGTCTTCCTTATCTTCAGAACATTGTGTATGAGTCGTTG 888
Query 1078 CGTCTGTACCCTGC-AGCCCCTATGCTGCTTCCTCACGTAGCCTCGA-AAGATTGTAAAG 1135
||| | |||||||| || |||| || || | |||||||| || || | |||| |||||||
Sbjct 889 CGTTTATACCCTGCAAGTCCCT-TGTTGGTCCCTCACGTGGCATC-AGAAGACTGTAAAG 946
Query 1136 TTGGGGGATACGATATGCCGCGTGGGACGATGCTATTGACTAATGCATGGGCTATACACA 1195
| ||||| ||||||||||| ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 947 TAGGGGGTTACGATATGCCACGTGGAACGATGTTATTGACTAATGCCTGGGCTATACACA 1006
Query 1196 GGGATCCCCTGCTATGGGATGATCCAACGAGCTTCAAGCCAGAGAGGTTCGAGAAAGAAG 1255
||||||| | |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1007 GGGATCCTAAGATATGGGATGATCCAACGAATTTTAAACCAGAGAGGTTCGAGAAAGAAG 1066
Query 1256 GAGAGGCTAAGAAGCTAATGCCGTTCGGGCTAGGAAGAAGGGCATGTCCTGGATCCGGTT 1315
| |||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1067 GGGAGGCTCATAAGCTAATGGGGTTCGGGCTAGGAAGAAGGGCATGTCCTGGGTCCGGTC 1126
Query 1316 TGGCTCAGCGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGA 1375
| ||||| |||||| || ||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1127 TAGCTCAATGGCTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGA 1186
Query 1376 GGATTGGAGAAGAAGAGGTCGATATGACTGAAGGTC-C--AGGACTCACAATGCCGAAAG 1432
|| |||| ||||||||||| ||||||| ||||||| | |||| ||| |||||| ||||
Sbjct 1187 GGGTTGGTGAAGAAGAGGTGGATATGAGTGAAGGTGGCGGAGGAGTCATAATGCCCAAAG 1246
Query 1433 CTAGACCGTTGGAAGCTATGTGCAGAGCACGTGACTTTGTTGGTAAAAT-CTTACCCGAC 1491
||| |||||||| ||| |||||||||||||||| ||||||||||||||| || | | ||
Sbjct 1247 CTATACCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGTAAAATACTCAAC-GAG 1305
Query 1492 TCCTCTTGA 1500
||| |||||
Sbjct 1306 TCCGCTTGA 1314
> Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275
Length=609
Score = 558 bits (302), Expect = 3e-158
Identities = 366/398 (92%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 1093 GCCCCTATGCTGCTTCCTCACGTAGCCTCGAAAGATTGTAAAGTTGGGGGATACGATATG 1152
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 202 GCCCCCATGCTGCTTCCTCACGTCGCCTCGAAAGATTGTAAAGTTGCGGGATACGATATG 261
Query 1153 CCGCGTGGGACGATGCTATTGACTAATGCATGGGCTATACACAGGGATCCCCTGCTATGG 1212
|| | ||| |||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct 262 CCACATGGCACGATGCTATTGACTAATGCATGGGCTATACATAGGGATCCTCGGCTATTG 321
Query 1213 GATGATCCAACGAGCTTCAAGCCAGAGAGGTTCGAGAAAGAAGGAGAGGCTAAGAAGCTA 1272
||||||||||| ||| |||| ||||||||||||||||||| |||||||||| | |||||
Sbjct 322 GATGATCCAACTAGCCTCAATCCAGAGAGGTTCGAGAAAGGAGGAGAGGCTCATAAGCTT 381
Query 1273 ATGCCGTTCGGGCTAGGAAGAAGGGCATGTCCTGGATCCGGTTTGGCTCAGCGGCTAGTG 1332
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 382 ATGCCGTTCGGGCTAGGTAGACGGGCATGTCCTGGGTCCGGTTTGGCTCAGCGGCTAGTG 441
Query 1333 ACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAAGAG 1392
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 442 ACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAG 501
Query 1393 GTCGATATGACTGAAGGTCCAGGACTCACAATGCCGAAAGCTAGACCGTTGGAAGCTATG 1452
|| ||||||||||||||| ||||||||| ||||| |||| || |||||||| ||| |||
Sbjct 502 GTTGATATGACTGAAGGTGGAGGACTCACTATGCCTAAAGGTATACCGTTGGTAGCCATG 561
Query 1453 TGCAGAGCACGTGACTTTGTTGGTAAAATCTTACCCGA 1490
||||||||||||| ||| ||||||||||||||||||||
Sbjct 562 TGCAGAGCACGTGCCTTCGTTGGTAAAATCTTACCCGA 599
Score = 134 bits (72), Expect = 2e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 908 ATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAACAATCCTGAGGTGC 967
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 107 ATACATCAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAACAATCCAGAGGTAC 166
Query 968 TGAACAAGGCCAGAGACGAGATCGACAGAATGATCG 1003
|||| ||||| ||||| |||||||| |||| |||||
Sbjct 167 TGAAAAAGGCGAGAGATGAGATCGATAGAAAGATCG 202
> Ahg925690 jgi|Araly1|925690|scaffold_201251.1
Length=299
Score = 270 bits (146), Expect = 2e-71
Identities = 193/216 (89%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 1267 AAGCTAAT-GCCGTTCGGGCTAGGAAGAAGGGCATGTCCTGGATCCGGTTTGGCTCAGCG 1325
|||||| | | |||||||| |||||||||| || |||||||| ||||| ||||||| ||
Sbjct 45 AAGCTACTAG-CGTTCGGGTTAGGAAGAAGAGCTTGTCCTGGGTCCGGACTGGCTCAACG 103
Query 1326 GCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGA 1385
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 104 GCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATGCTTTGAATGGGAGAGGATTGGAGA 163
Query 1386 AGAAGAGGTCGATATGACTGAAGGTCCAGGACTCACAATGCCGAAAGCTAGACCGTTGGA 1445
||||||||| ||||||||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct 164 AGAAGAGGTGGATATGACTGAAGGTGGAGGACTCACAATGCCTAGAGCTAGACCTTTGGT 223
Query 1446 AGCTATGTGCAGAGCACGTGACTTTGTTGGTAAAAT 1481
||| |||||| ||||||||| ||||||||| |||||
Sbjct 224 AGCCATGTGCCGAGCACGTGCCTTTGTTGGAAAAAT 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5