BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37380.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328030 jgi|Araly1|328030|fgenesh1_pm.C_scaffold_7000257 2959 0.0
> Ahg328030 jgi|Araly1|328030|fgenesh1_pm.C_scaffold_7000257
Length=1893
Score = 2959 bits (1602), Expect = 0.0
Identities = 1802/1900 (95%), Gaps = 8/1900 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTCACCACTTCTCGCCACGTCACTACCGCAGAATCAGTTATCCACCACCGCA 60
|||||||||||||||||| |||| ||||||||||||||||||| | | ||||||||
Sbjct 1 ATGGCTTCGTCACCACTTATCGCAACGTCACTACCGCAGAATC----A--CGCCACCGCA 54
Query 61 ACCGCCAGATTCCGCCTTCCGCCGCCAGAGAAACTTGCAGTTCTAATCGACAAATCGCAA 120
|||||||| |||||| ||||||||| ||||||||||||||| |||||||| | |||||
Sbjct 55 ACCGCCAGCTTCCGCAATCCGCCGCCTGAGAAACTTGCAGTTTTAATCGACGATTCGCAT 114
Query 121 TCAGTAGATGAAGTGCTCCAAATCCACGCAGCTATTCTCCGTCATAACCTCCTCCTCCAC 180
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 115 TCAGTGGATGAAGTGCTCCAAATCCACGCAGCTATTCTCCGTCATAATCTCCTCATCCAC 174
Query 181 CCTCGTTACCCAGTTCTAAACCTCAAGCTCCACCGTGCATACGCTTCCCACGGCAAAATT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCTCGTTACCCAGTTCTTAACCTCAAGCTCCACCGTGCATACGCTTCCCACGGCAAAATT 234
Query 241 CGCCACTCGTTGGCTTTATTTCACCAGACGATCGATCCAGACTTGTTCCTCTTCACCGCC 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CGCCACTCGTTGGCCTTATTTCACCAGACGATCGATCCAGACTTGTTCCTCTTCACCGCC 294
Query 301 GCAATCAACACTGCCTCCATTAACGGCCTCAAAGACCAAGCCTTCCTGCTTTATGTTCAA 360
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 295 GCGATCAACACTGCCTCCATTAACGGCCTCAAAGATCAAGCTTTCCTGCTTTATGTTCAA 354
Query 361 TTGCTTTCTTCTGAAATCAACCCCAATGAGTTTACTTTCTCGTCGCTTTTGAAATCTTGC 420
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 355 TTGCTTTCTTCTCAAATCAACCCCAATGAGTTTACTTTCTCGTCGATTTTGAAATCTTGC 414
Query 421 TCAACTAAGTCCGGAAAATTGATCCATACCCATGTTCTTAAATTCGGATTGGGGATTGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 415 TCAACTAAGTCCGGAAAATTGATCCATACCCATGTTCTTAAATTCGGATTGGGGCTTGAT 474
Query 481 CCTTACGTGGCGACTGGTCTCGTCGACGTTTATGCGAAAGGAGGAGATGTGGTATCTGCC 540
|| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 CCGTATGTGGCAACTGGTCTCGTCGACATTTATGCGAAAGGAGGAGATGTGGTATCTGCC 534
Query 541 CAGAAAGTGTTCGATAGAATGCCTGAGAGGAGTCTCGTTTCTTCTACAGCTATGATCACC 600
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 535 CAGAAGGTGTTCGATAGAATGCCTGAGAGAAGTCTCGTTTCTTCTACAGCTATGATCACT 594
Query 601 TGCTACGCAAAGCAGGGGAACGTCGAGGCTGCGAGAGCTTTGTTCGATAGTATGTGTGAG 660
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 595 TGCTATGCAAAGCAGGGGAACGTTGAGGCTGCGAGAGCTTTGTTCGATAGAATGTGTGAG 654
Query 661 AGAGACATTGTTTCTTGGAACGTGATGATTGATGGATACGCTCAACATGGGTTCCCTAAT 720
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 655 AGAGACATTGTTTCTTGGAACGTGATGATTGATGGATACTCTCAACATGGGTTCCCTAGT 714
Query 721 GACGCTCTGATGCTATTTCAGAAACTTTTGGCCGAAGGTAAACCAAAACCTGATGAAATA 780
|||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 715 GACGCTCTGATGCTTTTTCAGAAACTTTTGGCGGATGGTAAACCGAAACCTGATGAAATA 774
Query 781 ACCGTTGTAGCTGCTCTTTCAGCGTGTTCGCAGATTGGAGCGCTGGAAACTGGGCGTTGG 840
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 775 ACCGTTGTAGCTGCTCTTTCAGCTTGTTCGCAGATTGGAGCGCTTGAAACTGGGCGATGG 834
Query 841 ATCCATGTTTTTGTCAAGAGCAGTCGTATTAGGCTCAATGTTAAAGTATGTACGGGTTTG 900
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| | ||
Sbjct 835 ATCCATGTTTTTGTCAATAGCAGTCGCATTAGGCTCAATGTTAAAGTGTGTACGGCTCTG 894
Query 901 ATTGATATGTATAGCAAATGTGGGAGTTTGGAAGAGGCAGTTTTAGTTTTTAACGATACT 960
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 895 ATTGATATGTATAGCAAATGTGGGAGCTTGGAAGAGGCAGTTTTAGTGTTTAACGATACT 954
Query 961 CCAAGGAAGGATATCGTGGCGTGGAATGCGATGATTGCTGGTTATGCAATGCACGGTTAT 1020
|| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 955 CCTAGGAAGGATATCGTTGCGTGGAATGCGATGATTACTGGTTACGCAATGCACGGTTAT 1014
Query 1021 AGCCAAGATGCATTGAGATTGTTTAATGAGATGCAAGGGATCACAGGGTTGCAACCAACG 1080
|||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1015 AGCCAAGACGCGTTGAGATTGTTTGATGAGATGCAGGGGATCACAGGGTTGCAACCAACA 1074
Query 1081 GATATAACTTTCATAGGAACACTTCAGGCTTGTGCTCACGCTGGTTTAGTAAACGAAGGG 1140
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1075 GATATAACTTTCATAGGAACACTTCAGGCTTGTGCTCATGCTGGTTTGGTAAACGAAGGG 1134
Query 1141 ATA-AGAATCTTTGAGTCAATGGGACAAGAGTATGGGATTAAACCCAAGATTGAACATTA 1199
||| | |||||||||||||||||| |||||||||||||||||| ||||||| || |||||
Sbjct 1135 ATACA-AATCTTTGAGTCAATGGGGCAAGAGTATGGGATTAAATCCAAGATCGAGCATTA 1193
Query 1200 TGGATGCTTGGTCAGTCTACTCGGTCGTGCTGGCCAGTTAAAACGGGCTTACGAAACCAT 1259
||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1194 TGGATGCTTAGTTAGTCTGCTCGGTCGTGCTGGCCAGTTAAAACGGGCTTACGAAATCAT 1253
Query 1260 AAAAAACATGAACATGGATGCTGATTCTGTCTTATGGAGTTCTGTTCTCGGAAGCTGTAA 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AAAAAACATGAACATGGAGGCTGATTCTGTCTTATGGAGTTCTGTTCTCGGAAGCTGTAA 1313
Query 1320 ACTTCATGGAGATTTTGTGTTAGGCAAGGAAATTGCAGAGTATCTCATTGGACTAAACAT 1379
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1314 ACTTCATGGAGAATTTATGTTAGGCAAGGAAATTGCAGAGTATCTTATTGGACAAAACAT 1373
Query 1380 CAAAAACTCAGGAATTTATGTTCTTCTTTCGAACATATATGCATCGGTGGGTGATTATGA 1439
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1374 CTCAAACTCAGGAATTTATGTTCTTCTTTCGAACATATATGCATTGGTGGCTGATTATGA 1433
Query 1440 AGGTGTTGCAAAAGTGAGGAACTTGATGAAGGAGAAAGGAATAGTGAAGGAGCCTGGTAT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1434 AGGTGTTGCAAAAGTGAGGAACTTGATGAAGGAGAAAGGAATAGTGAAGGAGCCCGGTAT 1493
Query 1500 AAGCACCATAGAAATCGAAAACAAAGTTCATGAATTCCGAGCTGGAGATAGAGAACACTC 1559
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AAGCACCATAGAAATTGAAAACAAAGTTCATGAATTCCGAGCTGGAGATAGAGAACACTT 1553
Query 1560 GAAAAGCAAAGAAATTTACACAATGCTAAGAAAGATCAGCGAGCGGATCAAGTCTCATGG 1619
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1554 GAAAAGCAAAGAAATTTACACAATGCTAAGAAAGATCAGTGAGCGGATCAAGTCTCACGG 1613
Query 1620 TTATGTTCCAAATACAAACACAGTCTTGCAGGATCTTGAAGAGACAGAGAAAGAGCAATC 1679
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1614 TTATGTTCCAAATACAAACACAGTCTTGCATGATCTGGAAGAGACAGAGAAAGAGCAATC 1673
Query 1680 TCTACAAGTTCACAGCGAGAGACTCGCGATTGCATACGGTCTAATCAGCACCAAACCGGG 1739
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1674 TCTACAAGTTCACAGCGAGAGACTCGCGATTGCATACGGTCTAATCAGTACCAAACCGGG 1733
Query 1740 AAGTCCCTTGAAAATATTCAAGAACCTACGAGTATGTTCTGATTGTCATACGGTGACAAA 1799
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1734 AAGTCCCTTGAAAATATTCAAGAACCTACGAGTGTGTTCGGATTGTCATACGGTGACAAA 1793
Query 1800 ACTGATATCGAAAATCACAGGACGGAAAATCGTTATGAGAGATCGGAATAGGTTCCATCA 1859
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1794 ACTGATATCGAAAATCACAGGACGGAAAATCGTCATGAGAGATCGGAATAGGTTCCATCA 1853
Query 1860 TTTCACAGATGGTTCTTGCTCTTGTGGCGATTTCTGGTAA 1899
|||| ||||||| ||||||||||||| |||||||||||||
Sbjct 1854 TTTCTCAGATGGCTCTTGCTCTTGTGACGATTTCTGGTAA 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5