BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37420.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944112 jgi|Araly1|944112|scaffold_700341.1 2523 0.0
> Ahg944112 jgi|Araly1|944112|scaffold_700341.1
Length=1811
Score = 2523 bits (1366), Expect = 0.0
Identities = 1635/1768 (92%), Gaps = 6/1768 (0%)
Strand=Plus/Plus
Query 1 ATGACGTTATCCTTCAAGACTTGTTCTTCTTCTTCTCCTCGATTAACACCAAAATCCATC 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGACGTTATCCTTCAAGACTTCTTCTTCTTCTTCTCCTCGATTAACACCAAAATCCATC 81
Query 61 GCCGGAGCAGGAGACGATGCTTCTCAATTCTTCCATCACAAGACAAGTTACAGAGCACAC 120
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 GCCGGAGCTGGAGACGATGCTTCTCAATTCTTCCATCACAAGACGAGTTACAGAGCACAC 141
Query 121 ACAACCACActcttcttcatcctcgtttctctttctctctttggtttcatctctctttAT 180
|||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||| |||
Sbjct 142 ACAACCACTCTCTTCTTCATCCTCGTTTCTCTCTCCCTCTTCGGTTTCTTCTCTCTCTAT 201
Query 181 TATTCCCCCAACACGATTTATCGAGCTGCCTTCTTTGCCACGACACGCCCAGCTAAATCA 240
| |||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 202 TGTTCCCCAAACACGATTTATCGAGCTGCCTCCTTCCCCACGACACGCCCCTCTAAATCA 261
Query 241 AGATTCGTTAGTTACGTGATCAACACTCAAGATTCAAATCATCATCAATTATCCAACGGT 300
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 262 AGAATCGTTAGTTACGTGATCAACACTCAAGATTCAAGCCATCATCAATTATCCAACGGT 321
Query 301 TCACGTAGGATCAGAGCCGAAGCTGTTCTCTGGCCAGGATGGGAGATTCTAGTGATCGTT 360
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 322 TCTCGTAGGATAAGAGCCGAAGCTGTTCTCTGGCCAGGATGGGATATTCTGGTGATCGTT 381
Query 361 TCACCGGAGGAGAAAGCTAAGCCACCGCCGTTTCCAGGAGAGAATTACATATGTTTTTAC 420
|| |||||||| |||| || ||| |||| | |||||||||||||||||| ||||||||||
Sbjct 382 TCGCCGGAGGAAAAAGTTATGCCGCCGCAGCTTCCAGGAGAGAATTACACATGTTTTTAC 441
Query 421 CCTAACGGAGAGAAATCCACGGCGAGATTCGCCGCGATTCTCCCTTTCTCAAACCGTGCA 480
||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||
Sbjct 442 CCTAACGGAGAGAAATCCATAGCGAGATTCGCGGCGATTCTGCCTTTCTCGAACCGTACA 501
Query 481 TCATTCAGATGCAGTCTTCCCGGAATTTATCGCCACCACCATCCAATTCCGACTCCGATC 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 502 TCATTCAGATGCAGTCTTCCCGGAATTTATCGCCACCACCATCCGATTCCGACTCCGATC 561
Query 541 CTCGCCTCTTCGAAAAGGTTCCAACTTTCGCCGGAAACACGTTGGCCTGATCTCCCTCTA 600
||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 562 CTCGCTTCTTCGAAAACGTTCCAACTTTCACCGGAAACCCGTTGGCCTGATCTACCTCTA 621
Query 601 TGGAATTTCGTCGTTTTCGAAGCCATTTCAACAGAAACCGACGTCGTTCTCTTAGTCAAG 660
||||||||||| ||||||||||||||||| || |||| ||||||||||||||| ||||||
Sbjct 622 TGGAATTTCGTAGTTTTCGAAGCCATTTCCACGGAAAACGACGTCGTTCTCTTCGTCAAG 681
Query 661 GGGCCGAACCGTGGATTAGGTTCCAATAAACCACCGGAGTCGTTTCGGTGTGTGTTTGGT 720
|||||||| |||||| |||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 682 GGGCCGAATCGTGGACTAGGCTCCAATAAACCGCCGGAGTCGTTTCGTTGTGTGTTTGGC 741
Query 721 GAGGAGTCCGATACAGCCATTAGAACCGCCGTGACTAGCTCGGTCCAAGAGGTGTTCCGA 780
||||| |||||||| ||||| ||||||||||||| || || || |||||||||||||||
Sbjct 742 GAGGAATCCGATACGGCCATCCGAACCGCCGTGACGAGTTCCGTGCAAGAGGTGTTCCGA 801
Query 781 TGTTCATTACCGAACATAACGATCGATACTCCGGTCAAAATCTACCTTGAGGCGGTGGCA 840
|| ||||||||| |||||||||||||||| ||| ||||||| ||||| ||||| || |||
Sbjct 802 TGCTCATTACCGGACATAACGATCGATACGCCGATCAAAATATACCTCGAGGCCGTAGCA 861
Query 841 ACCGGTAAAGAAGAGACAAAGACCGTCCCGTCGGTGGCGTATTATAGCCCCAAGCGCACG 900
|||| |||||| |||||||||||| |||||||||||||||| |||| |||||||| |||
Sbjct 862 ACCGATAAAGAGGAGACAAAGACCATCCCGTCGGTGGCGTACTATACCCCCAAGCACACT 921
Query 901 TTAGTGGAACCACGTGAGAAA-TCGCTATTGTGCGCGACGACGATGGTGTACAATGTAGC 959
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 922 TTAGCGGAGCCACGTGAGAAAGT-GCTATTGTGCGCGACGACGATGGTGTACAATGTAGC 980
Query 960 AAAGTATCTGAGAGAGTGGGTGATGTATCACGCGGCGATCGGAATACAGAGATTCATAAT 1019
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 981 AAAGTATCTGAGAGAGTGGGTGATGTATCACGCAGCGATCGGAATACAGAGATTCATCAT 1040
Query 1020 ATACGATAACGGTAGCGACGATGAGTTAAACGACGTCGTTAAAGGGCTTAATAGTGAAAA 1079
||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||
Sbjct 1041 ATACGATAACGGTAGCGACGACGAGTTAAACGACGTCGTTGAAGTGCTTAATAGTGAAAA 1100
Query 1080 ATATGACGTCATCAAAGTTTTATGGATCTGGCCCAAGACCCAAGAGGCTGGGTTCTCCCA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ATATGACGTCATCAAAGTTTTATGGATCTGGCCCAAGACCCAAGAGGCTGGGTTCTCCCA 1160
Query 1140 CGCGGCGGTGTATGGAAACGATACGTGCACCTGGATGATGTATCTTGACGTAGACGAGTT 1199
||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1161 CGCGGCGGTGTATGGTAATGATACATGCACCTGGATGATGTATCTTGATGTAGACGAGTT 1220
Query 1200 TCTCTTCTCTCCGGCTTGGGATAAACAATCACAACCGTCGGATCAGATGATTAGGTCTCT 1259
||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 1221 TCTCTTCTCTCCGGCTTGGGATAAACAATCACAGCCATCGGATCGGATGATTAGGTCTCT 1280
Query 1260 TCTACCGTCGGATCAGAGCATGATTGGACAAGTGTCGTTTAAATCACACGAGTTTGGACC 1319
||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1281 TCTACCGTCAAATCATAGCATGATCGGACAAGTGTCGTTTAAATCACACGAGTTTGGACC 1340
Query 1320 GTCTAATCAGACAAAGCATCCACGTGGAGGTGTGACACAAGGTTACACGTGTCGACGAGA 1379
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1341 GTCTAATCAGACAAAGCATCCACGTGAAGGTGTGACACAAGGTTACACGTGTCGACGAGA 1400
Query 1380 AGAAGATCAACGGCACAAGTCGATCGTGCGGCTAAGCGCGGTAGAGCACTCGCTTTACAC 1439
|||||||||||||||||||||||||||||||| |||| ||| ||||| || ||||||||
Sbjct 1401 GGAAGATCAACGGCACAAGTCGATCGTGCGGCTGAGCGTGGTGGAGCATTCTCTTTACAC 1460
Query 1440 GGCCATCCACCACTTCGGTTTGAAGAGAGAGTACGAGTGGCGCGTGGCGGACACGGAGGA 1499
||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1461 GGCGATCCACCACTTCGGTTTAAAGGGAGAGTATGAGTGGCGCGTGGCGGACACGGAAGA 1520
Query 1500 GGGAGTGGTGAACCATTACAAGTACCAAGCGTGGCAAGAGTTCAAGGCCAAGTTTAAACG 1559
||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 1521 GGGGGTGGTGAACCATTACAAGTACCAAGCATGGCGGGAGTTCAAGGCCAAGTTCAAACG 1580
Query 1560 GCGTGTGTCGGCTTACGTGGTGGATTGGACTAGAGTCTCTAATCCTAAGTCGAGAGATCG 1619
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1581 GCGCGTGTCAGCTTACGTGGTGGATTGGACTAGAGTTTCTAATCCTAAGTCGAGAGATCG 1640
Query 1620 AACTCCTGGGTTGGGCTTTAGGCCCGTTGAACCGGAAGGATGGGC-TCATAAGTTTTGTG 1678
|||||||||| ||||||||| ||||||||| ||||| |||||||| | | ||||||||||
Sbjct 1641 AACTCCTGGGCTGGGCTTTAAGCCCGTTGAGCCGGACGGATGGGCCT-ACAAGTTTTGTG 1699
Query 1679 AAGTCGA-GGATTTGAGATTGAAGATATTAACCAGAAAATGGTTTGGGTACCCAGTTAAA 1737
||||| | |||| |||| ||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1700 AAGTC-ATGGATCTGAGGTTGAAGAGGTTAACCAAAAAATGGTTTGGGTACCCGGTTAAA 1758
Query 1738 AACGGTTATAGGATGGCATGGCAGAGAT 1765
||||||||||| ||||||||||||||||
Sbjct 1759 AACGGTTATAGAATGGCATGGCAGAGAT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5