BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37440.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490875 jgi|Araly1|490875|fgenesh2_kg.7__308__AT4G37440.2 1903 0.0
> Ahg490875 jgi|Araly1|490875|fgenesh2_kg.7__308__AT4G37440.2
Length=1545
Score = 1903 bits (1030), Expect = 0.0
Identities = 1390/1557 (89%), Gaps = 52/1557 (3%)
Strand=Plus/Plus
Query 2 AAAAGCCTCGACCACCT-AACGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGCCTCGACCACCTCACCGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60
Query 61 TGTTTCTCACCGCCGATTATAAAATACTTATCTACTACCATCTCCTTGTCGGAAACGGCG 120
||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| |||
Sbjct 61 TGTTTCTCACCGCCGATTATAAAATCCTTCTCTACTGTCATCTCCTTGCCGGAAACAGCG 120
Query 121 AGCTA--AGTCGATTAGGGTTTTAATTGAGAA---GAAATAAAAAGGATATTTTGGTATG 175
||||| ||| |||| || ||| | || || || || | || | |||||||||
Sbjct 121 AGCTATTCGTCCATTA-GGATTT-A-TGTCAATTCGACGTATACTTGAGAATTTGGTATG 177
Query 176 GAGGTGAAGGAATCGAAGATAGATATGGATGATTCAGTCAATAAGGAGATTGGGGAATTA 235
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||| || ||||
Sbjct 178 GAGGTGAAGAAATCGGAGATAGAAATGGATGATTCAATCAATAAGGAGATTGAGGCATTA 237
Query 236 CCAAAAGATATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATCATGTTGAA 295
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 CCCAAAGAGATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATAATGTT--- 294
Query 296 GAAGATGTCACTGAGGATCTTCCTTGTGGTGGTGATGATATTGATGCTGATGCTTCTATT 355
|||||| ||||||| |||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 295 GAAGATCTCACTGATGATCGTCTTTGTGGTGGTGGTGATGCTGATGCTGATGCTTCTATT 354
Query 356 AAAAAAGAGGTTGCAGAGTTCGACGAGGACGAGGTTGATATATTGGAATGCAATGATAAC 415
||||||||||||| ||| || ||||| ||||||||||||||||||| |||||||| | ||
Sbjct 355 AAAAAAGAGGTTGAAGACTTGGACGACGACGAGGTTGATATATTGGGATGCAATGGTGAC 414
Query 416 ATTGAGATTCAAGTCTCAGG-GTGTGATGATGGGACTGATGGATATTCGAGTTCGTTTGG 474
| ||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 415 AATGAGATTCAAGTCTC-GGAATGTGACGATGGGACTGATGGATATTCGAGCTCGTTTGA 473
Query 475 TGGAACGGATTCTGAAC---------ATG--A-------GAATGATCAAGAAGTTGACTC 516
|||||||| |||||||| ||| | |||||||||||||||||| ||
Sbjct 474 TGGAACGGTTTCTGAACATGGGAGTGATGAAACTGCTTTGAATGATCAAGAAGTTGATTC 533
Query 517 CATGATTTGTAATGAG-ACTTCACTTCCTCTTTGGGTGAGAAAAAGGAAGCTGACTGATC 575
|||| ||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 534 CATGGTTTGTAATG-GTACTTCACCTCCTCTCTGGGTGAGAAAGAGGAAGCTGACTGATC 592
Query 576 ATTGGAGGAGGTTTGTACAGCCTACTTTAATGTGGCGTTGCAAATGGATTGAACTC-AAA 634
||||||||| || ||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 593 ATTGGAGGAAGTCTGTACAGCCTA---TAGCGTGGCGTTGCAAATGGATTGAACTCAAAA 649
Query 635 TACAAAGAACTTCAGAACCAAGCACAGAAGTACGACAAAGAAGTTGAAGAATATTACCAA 694
| ||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 650 T-CAAAGAAATTCAGAACCAAGCACAGATGTACGACAAAGAAGTTGAAGAATTTTGCCAA 708
Query 695 GCCAAGAAGTTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAGTAAAGGCTTTACCT 754
|||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 709 GCCAAGAAACTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAATAAAGGCATTGCCT 768
Query 755 CCTCTTCCATGTTATACTCAGAAAACCCGACTCATGAAGAGGAAAACGAGAAAGCGAGTT 814
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 769 CCTCTTCCATGTTATACTCAGAAAACCCAACTCAGGAAGAGGAAAAAGAGAAAGCGAGTT 828
Query 815 GAAGAGACCGCTGATGTTAC-ATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 873
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 829 GAAGAGACCGCAGATGTT-CAATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 887
Query 874 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGCAACCTAGATAAGA- 932
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 888 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGTAACCTAGATAA-AC 946
Query 933 AGAATAAGAGCGCCAAGGATGAGACAGCTTTCTCTGAAGAGACACCGCCTCTCGAGTTTA 992
|||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 947 GGAATAAGAGCGCCAAGGATGAGTCAGCATTCTCTGAAGAGTTACCGCCTCTCGAGTTTA 1006
Query 993 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAAATTGAAGCAGCAAAGTCAGAAG 1052
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1007 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAGATTGAAGCAGCAAAGTCAGAAG 1066
Query 1053 CCCGTAACTTGAAGATCCGCGTAGACAAGGTTTTGAGTGAAAATCCAAGTATATTCCCTC 1112
||||||||||||||| ||| |||||||||||||||||||||||||| | || ||| |||
Sbjct 1067 CCCGTAACTTGAAGAACCGAGTAGACAAGGTTTTGAGTGAAAATCCCATTACGTTCTCTC 1126
Query 1113 TGGCTAACACAGTGAATCCACTTGGAGCTGCTGATG-T--------ATACACCAGCTCAG 1163
|||||||||||||||||| |||||||||||||| || | ||||||||||||||
Sbjct 1127 TGGCTAACACAGTGAATCTACTTGGAGCTGCTGGTGCTGCTGGTGTATACACCAGCTCAG 1186
Query 1164 AACAACAAAAGCCCCTGCTGGCTATCAAAAACGAAGATGAGAAATCGATCATCTCTGAAG 1223
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1187 AACAAAAAAAGCCCCTACTTGCTATCAAAAACGAAGATGAGAAATCGATCATTTCTGAAG 1246
Query 1224 AAAAACCGGTGAAATCTGCTTCAGTTTCATCTCATCACGTCTCACCTGAAGACGACGAGA 1283
||||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||||
Sbjct 1247 AAAAACCAGTGAAATCTGCTTCAGTTTCATCTCATCACGACACACCTGAAGATGATGAGA 1306
Query 1284 CAACAGATATTTTACTGTCTGAGATTCTAGCATCAAAGCGAAGGGAAGGGAAATCTATTA 1343
||||||||||||| |||||||| || || ||||||| |||||||||||||||| |||||
Sbjct 1307 CAACAGATATTTTGCTGTCTGAAATCCTGGCATCAAGGCGAAGGGAAGGGAAAGCTATTG 1366
Query 1344 TTCCCGATAAGAATCTAGTGAAGACAGAACAAGCTTCAATTGAGGAAGGTCCATCAAGAC 1403
||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1367 TTCCCGATAAGAATCTACAGAAGACAGAACAAACTTCAGTTGAGGAAGGTCCATCAAGAC 1426
Query 1404 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAATCATTACGAAGGAAGAGAGTAACCCAA 1463
|||||||||||||||||||||||||||||||| | || ||||||||||||| || |||||
Sbjct 1427 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAGTGATGACGAAGGAAGAGACTAGCCCAA 1486
Query 1464 AGAGGCGTCGGGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1520
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 AGAGACGTAGAGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5