BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37445.1

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490873 jgi|Araly1|490873|fgenesh2_kg.7__306__AT4G37445.1          880    0.0  


> Ahg490873 jgi|Araly1|490873|fgenesh2_kg.7__306__AT4G37445.1
Length=512

 Score =  880 bits (476),  Expect = 0.0
 Identities = 501/513 (98%), Gaps = 2/513 (0%)
 Strand=Plus/Plus

Query  1    TAACTTCTAGACAATATGGGTA-GTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC  59
            |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  1    TAACTTCTAGACAATATGGG-AGGTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC  59

Query  60   GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA  119

Query  120  CAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT  179
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CAGCTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT  179

Query  180  ACCAGGCAGGCACTTCGATTTCCCAACCCCGGACCAAATAAAGGTTTGTTTCGCGCGGTG  239
            ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct  180  ACCAGGCAGACACTTCGATTTCCCGACCCCGGACCAAATAAAGGCTTGTTTCGCGCGGTG  239

Query  240  GAAGGAAGCGAAAGACGAAGAAGAGAAGAAAAAATTGTTCATTGAGTTCATGTCAAAGAG  299
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  240  GAAGGAAGCGAAAGATGAAGAAGAGAAGAAAAAATTGTTCATAGAGTTCATGTCAAAGAG  299

Query  300  CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTATCTCCACCGGC  359
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  300  CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTGTCTCCACCGGC  359

Query  360  GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTTAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  360  GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTCAT  419

Query  420  ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCTGCCAAACTCTC  479
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  420  ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCGGCCAAACTCTC  479

Query  480  TAGACGAATGTATTTGAAATAGTGTTTTAACTA  512
            ||||||||||||||||||||| |||||||||||
Sbjct  480  TAGACGAATGTATTTGAAATAATGTTTTAACTA  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107995403


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5