BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37445.1 Length=551 Score E Sequences producing significant alignments: (Bits) Value Ahg490873 jgi|Araly1|490873|fgenesh2_kg.7__306__AT4G37445.1 880 0.0 > Ahg490873 jgi|Araly1|490873|fgenesh2_kg.7__306__AT4G37445.1 Length=512 Score = 880 bits (476), Expect = 0.0 Identities = 501/513 (98%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 1 TAACTTCTAGACAATATGGGTA-GTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC 59 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1 TAACTTCTAGACAATATGGG-AGGTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC 59 Query 60 GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA 119 Query 120 CAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT 179 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CAGCTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT 179 Query 180 ACCAGGCAGGCACTTCGATTTCCCAACCCCGGACCAAATAAAGGTTTGTTTCGCGCGGTG 239 ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 180 ACCAGGCAGACACTTCGATTTCCCGACCCCGGACCAAATAAAGGCTTGTTTCGCGCGGTG 239 Query 240 GAAGGAAGCGAAAGACGAAGAAGAGAAGAAAAAATTGTTCATTGAGTTCATGTCAAAGAG 299 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 GAAGGAAGCGAAAGATGAAGAAGAGAAGAAAAAATTGTTCATAGAGTTCATGTCAAAGAG 299 Query 300 CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTATCTCCACCGGC 359 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTGTCTCCACCGGC 359 Query 360 GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTTAT 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 360 GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTCAT 419 Query 420 ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCTGCCAAACTCTC 479 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 420 ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCGGCCAAACTCTC 479 Query 480 TAGACGAATGTATTTGAAATAGTGTTTTAACTA 512 ||||||||||||||||||||| ||||||||||| Sbjct 480 TAGACGAATGTATTTGAAATAATGTTTTAACTA 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20107995403 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5