BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37450.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490872 jgi|Araly1|490872|fgenesh2_kg.7__305__AT4G37450.1 1051 0.0
> Ahg490872 jgi|Araly1|490872|fgenesh2_kg.7__305__AT4G37450.1
Length=793
Score = 1051 bits (569), Expect = 0.0
Identities = 738/814 (91%), Gaps = 34/814 (4%)
Strand=Plus/Plus
Query 19 ATTATGGATCGCAATTTCCTCCTAACAGTTACATTGATCTGCATTGTCGTCGCCGGTGTC 78
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATGGATCACAAGTTCCTCCTAACAGTTACATTGATCTGCATTGTCGTCGCCGGTGTC 60
Query 79 GGTGGCCAATCTCCTATCTCTTCTCCGACCAAATCTCCCACCACTCCTTCTGCTCCAACT 138
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGCCAATCTCCGATCACATCTCCGACCAAATCTCCCACCACTCCTTCTGCTCCAACT 120
Query 139 ACTTCCCCTACTAAATCCCCCGCCGTTACTTCTCCCACTA-CGGCTCCGGCGAAAACTCC 197
|||||||||||||||||||||||||||||||||||||| | | ||||| |||||| ||||
Sbjct 121 ACTTCCCCTACTAAATCCCCCGCCGTTACTTCTCCCAC-AGCTGCTCCTGCGAAACCTCC 179
Query 198 AACTGCT-TCGGCTTCTTCACCGGTTGAGTCACCAAAATCTCCGGCTCCTGTTAGCGAGT 256
|| || | ||||||||||| || || ||||| |||||||||||||||||| |
Sbjct 180 GGCTTCTAT-AGCTTCTTCACCTGTAGAATCACCGAAATCTCCGGCTCCTGTT----A-- 232
Query 257 CGTCTCCACCACCGACACCTGTTCCAGAGAGCTCTCCTCCGGTTCCTGCACCAATGGTTT 316
| | ||||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct 233 -G-------C-CCGACACCTGTTCCAGAGAGCTCTCCTCCGGCTCCTACACCAAAGGCTT 283
Query 317 CTTCTCCAGTGAGCTCTCCACCGGTTCCAGCACCAGTAGCTGATTCTCCTCCAGCTCCGG 376
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CTTCTCCGGTGAGCTCCCCACCGGTTCCAGCACCAGTAGCTGATTCTCCTCCAGCTCCGG 343
Query 377 TAGCCGCTCCGGTTGCTGATGTACCGGCTCCTGCTCCAAGCAAGCATAAGAAGACTACAA 436
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 344 TAGCTGCTCCGGTCGCTGATGTACCGGCTCCTGCTCCAAGCAAGCATAAGAAGGCTACAA 403
Query 437 AGAAATCGAAAAAGCATCAAGCTGCACCTGCTCCGGCTCCGGAACTTCTCGGTCCACCTG 496
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 404 AGAAATCGAAAAAGCATCAAGCTGCACCGGCTCCGGCTCCAGAACTTCTCAGTCCACCTG 463
Query 497 CACCACCGACTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCC---- 552
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 464 CACCACCGGCTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGCCCTTCCACAT 523
Query 553 --GCCGACGATCAGAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAG 610
|||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct 524 CCGCCGACGATCAGAGCGGAGCAGAGAGCACAAAGGTGTCGAGGAATGTGGCGGTGGGAG 583
Query 611 CGGTTGCAACCGCATGGGCCGTTCTCGTTATGGCATTCTAAATTATTTATCATTTCACCT 670
||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 584 CGGTTGCAACCGCGTGGGCCGTTCTCGTTTTGGCATTCTAAATT-T--ATCATTTCACCC 640
Query 671 CTGATAtttttt-agtttttatatttttGACCCTACCATTGTCTCTTTCTTTACGAATTT 729
|| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 641 CTAA-ATTTTTTTAGTTTTTATCTTTTTGACCCTACCATTGTCTCTTTCTTTACGAATTT 699
Query 730 GGTAATGAGTATTATT-T--AATTGATTATACAGTTTGTTTTCTTTTATTTTATTTATAT 786
|||| ||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 700 GGTATTGAGTATTATTATTTAATTGATTATACAATTTCTTTTCTTTTATTTTATTTATAT 759
Query 787 GGAAATAATAAGAA-TTCATATCTGTCAGTGATG 819
|||||||||||||| |||||||||||||||||||
Sbjct 760 GGAAATAATAAGAAATTCATATCTGTCAGTGATG 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5