BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37470.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944104 jgi|Araly1|944104|scaffold_700333.1 1266 0.0
> Ahg944104 jgi|Araly1|944104|scaffold_700333.1
Length=858
Score = 1266 bits (685), Expect = 0.0
Identities = 803/860 (93%), Gaps = 8/860 (1%)
Strand=Plus/Plus
Query 86 CCAGAGAAGAATCTTCTTTAGAGAGATGGGTGTGGTAGAAGAAGCTCACAACGTGAAGGT 145
|||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CCAGGGAAGAA---TCTTTAAAGAGATGGGTGTGGTAGAGGAAGCTCACAACGTGAAGGT 57
Query 146 GATTGGTTCAGGAG---AAGCCACGATCGTGTTAGGTCACGGGTTCGGCACGGACCAGTC 202
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GATTGGTTCAGGAGATCAAGCCACGATCGTGTTAGGTCACGGGTTCGGCACGGACCAGTC 117
Query 203 AGTATGGAAACACTTGGTTCCACATCTGGTCGACGATTACCGCGTCGTCCTCTACGACAA 262
||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 118 AGTATGGAAACACCTGGTTCCACATCTGGTCGACGATTACCGCATCGTGCTTTACGACAA 177
Query 263 CATGGGAGCCGGTACGACCAACCCTGACTATTTCGACTTCGATCGTTACTCAAATCTCGA 322
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 178 CATGGGAGCCGGTACGACAAACCCTGACTATTTTGACTTCGATCGTTACTCGAATCTCGA 237
Query 323 AGGCTACTCTTTCGATTTGATTGCAATCTTGGAAGATCTCAAGATTGAGTCTTGTATCTT 382
||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 238 AGGTTACTCTTTCGATTTGATTGCAATCTTAGAAGATCTCAAGGTTGAGTCTTGTATCTT 297
Query 383 TGTTGGCCACTCTGTTTCTGCCATGATTGGTGTCTTGGCTTCTCTTAACCGTCCTGATCT 442
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 TGTTGGTCACTCTGTTTCTGCCATGATTGGTATCTTGGCTTCTCTTAACCGTCCTGATCT 357
Query 443 CTTCTCCAAAATCGTCATGATCTCTGCTTCTCCGAGATACGTAAACGATGTTGATTACCA 502
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 358 CTTCTCCAAAATCGTCATGATTTCTGCTTCTCCAAGATACGTAAACGATGTTGATTACCA 417
Query 503 AGGTGGATTCGAACAAGAAGACTTAAACCAACTATTCGAAGCCATCCGAAGCAACTACAA 562
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 418 AGGTGGATTCGAACAAGAAGACTTAAACCAACTCTTTGAAGCGATCCGAAGCAACTACAA 477
Query 563 AGCGTGGTGCTTAGGTTTCGCTCCACTCGCCGTCGGTGGCGACATGGACTCCATCGCCGT 622
||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 478 AGCGTGGTGCTTAGGTTTCGCTCCACTCGCCGTCGGTGGAGACTTAGACTCAATCGCCGT 537
Query 623 TCAAGAATTCAGCAGAACACTCTTCAATATGCGTCCCGACATAGCTCTCTCCGTCGGC-C 681
||||||||||||||||||||||||||| |||||||||||||| ||||| || || | | |
Sbjct 538 TCAAGAATTCAGCAGAACACTCTTCAACATGCGTCCCGACATTGCTCTTTCTGTTG-CTC 596
Query 682 AGACCATTTTCCAAAGTGACATGAGACAGATCTTACCTTTTGTCACTGTTCCGTGTCACA 741
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 597 AGACCATTTTCCAAAGTGACATGAGACAGATCTTACCTTATGTCTCTGTTCCTTGTCACA 656
Query 742 TTCTCCAAAGTGTTAAGGACTTAGCTGTACCAGTCGTTGTCTCCGAGTATCTTCACGCCA 801
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 657 TTCTTCAAAGTGTTAAGGACTTAGCCGTACCAGTCGTCGTCTCCGAGTATCTTCACGCCA 716
Query 802 ATCTTGGCTGTGAATCCGTCGTCGAGGTTATTCCTTCTGATGGTCATCTTCCTCAGCTTA 861
||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 717 ATCTTGGATCTGAATCCGTCGTTGAAGTTATTCCTTCTGATGGTCATCTTCCTCAGCTTA 776
Query 862 GCTCACCAGATTCTGTTATTCCTGTCATCCTCCGTCACATTCGTAATGACATTGCTATGT 921
|||| || ||| |||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 777 GCTCGCCGGATACTGTTATTCCCGTTATCCTCCGTCACATTCGTAATGACATTGCTGTGT 836
Query 922 GATTGTAAGAGATTTAATTA 941
|||||| ||| || || |||
Sbjct 837 GATTGTGAGAAATGTAGTTA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5