BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37480.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888307 jgi|Araly1|888307|Al_scaffold_0007_293 1886 0.0
> Ahg888307 jgi|Araly1|888307|Al_scaffold_0007_293
Length=1476
Score = 1886 bits (1021), Expect = 0.0
Identities = 1312/1447 (91%), Gaps = 42/1447 (3%)
Strand=Plus/Plus
Query 1 ATGACGATTCTCGCCGGGTTGATACGCCGGCGTTTTAGTAGATTAGTTCCGGTTCAACTG 60
||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||| || |
Sbjct 1 ATGACGATTCTCGCCGGATTGATACGACGGCGTTTTAGTAGATTGGTTACGGTT--AC-G 57
Query 61 AATTACGGTTTCGAACCG--TCGCGAATTCTCTTTAACCCGAGTCAAGGAAGAACTCGGT 118
||| | ||||| || | | || | | || | | | ||| | | ||| |||||||
Sbjct 58 -ATT-CCGTTTC-AATTGAATTACGGA-T-TC-GT-A-CGGAG-CCA--AAGTACTCGGT 106
Query 119 TGCTGAGCGGCGAGGCTGAGTCCAATCGGAACGAGTTTCCGGTGGAGAACGCTTACGATA 178
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 107 TGCTGAGCGGCGAGGCTGAGTCGAATCGGAACGAGTTTCCGGTGGAGAACGCGTACGTTA 166
Query 179 TCTTGAATGTCTCCGAAACCAGCTCAATCGCAGAGATCAAAGCATCATTTCGCAGACTCG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 167 TCTTGAATGTCTCCGAAACCAGCTCAATCGCAGAGATCAAAGCATCATTTCGTAGACTCG 226
Query 239 CCAAGGAGACTCATCCTGATCTGATCGAATCCAAGAAAGATCCATCAAATTCGAGACGAT 298
| || |||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |
Sbjct 227 CGAAAGAGACTCATCCTGATCTGATCGAATCTAAGAAAGATCCATCTAATTCCATACGCT 286
Query 299 TCGTTCAGATTCTCGCTGCTTATGAGATTCTATCAGATTCTGAAAAGAGAGCACACTATG 358
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 287 TTGTTCAGATTCTCGCTGCTTATGAGATTCTTTCAGATTCTGAAAAGAGAGCACACTATG 346
Query 359 ATAGATATTTGCTATCTCGGAGAATGGTAATGAAGAAGCACTCG-GGACAAGGTTATATG 417
||||||||||||||||||||||||||||||||| ||| || | | ||||||| ||||||
Sbjct 347 ATAGATATTTGCTATCTCGGAGAATGGTAATGACGAAACAAT-GTAGACAAGGGTATATG 405
Query 418 ATTCACAGGTATAAAACAGGATTGACATTGAGTCAAGAGATGGAAGTAGTTGAATGGTTA 477
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ATTCACAGGTATAAAGCACGATTGACATTGAGTCAAGAGATGGAAGTAGTTGAATGGTTA 465
Query 478 AAGTGGTATAGAGAAGCAATACATGATATAGTATTGGAGAAGAGAGTAGCAAATGGTACT 537
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 466 AAGTGGTATAGAGAAGCAATACATGATATAGTATTGGAGAAGAGAGTGGCAAATGGTACA 525
Query 538 GGTTACTTAGATGAACTTG-AAGAAGATTTTTATTCAGCTATACGAGCGGCCTACTTTGG 596
||||||||||||||| ||| |||||||||||||||| ||||||||||| || ||||||||
Sbjct 526 GGTTACTTAGATGAA-TTGGAAGAAGATTTTTATTCGGCTATACGAGCCGCGTACTTTGG 584
Query 597 GCCTGATGTTGAATCTGTTGAGCTTCTTCCTGATTGTTTTGAAGCTGAGGAAAGGTCTGT 656
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCCTGATGTTGAATCTGTGGAGCTTCTTCCTGATTGTTTTGAAGCTGAGGAAAGGTCTGT 644
Query 657 GTATGATACACGAGAGGTTTTGCATTTGGTATCAGGACGGGATCTTTTTGGTATGGTTTC 716
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 645 GTATGATACACGAGAGGTTTTGCATTTGGTTTCAGGACGAGATCTTTTTGGTATGGTTTG 704
Query 717 CTTGGTTGATAACTTCCTTGAGCTTTCTTCTGCTTGCTCAAAGAAATTGGCTTTGTCGTC 776
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 705 CTTGGTTGATAACTTCCTTGAGCTTTCTTCTGCTTGCTCCAAGAAATTGGCTTTGTCGTC 764
Query 777 GTTTATGGATTCGGACCTTG-GTCAAGCAGTTGAGAAAGGCAACAATGACATGATGTCTG 835
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 765 ATTTATGGATTCGGACCT-GAGTCAAGCAGTTGAGAAAGGCAAGTATGACATGATGTCTG 823
Query 836 CTGAAAGGATTGGTCTTCAGATATCTCATATACAATCTTCAAGAAGTAAAAACCATGTTT 895
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 824 ATGAAAGGATTGGACTTCAGATATCTCATATACAATCTTCTAGAAGTAAAAACCATGTTT 883
Query 896 CTGATGCGTATAAAGATATTCAGCTGCATGTATCTGGAAGAGTTGTTGCTACAGCCATTA 955
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 884 CGGATGCATATAAAGATATTCAGCTGCATGTTTCTGGAAGAGTTGTTGCTACAGCTATTA 943
Query 956 GGGTTCCCCCAAAAGGGTATCATGAAAAGAAACAAATTGAGGGTGATCACGATCTTATAC 1015
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 944 GGATTCCCCCAAAAGGGTATTTTGAAAAGAAACAAATTGAGGGTGATCACGATCTCATAC 1003
Query 1016 ACGTTTTCCTCAATTCAGATGAAGGATCTAATCATGGCACTGAATCGCCT-CCGGGAAAT 1074
||||||||||||||||||||||| ||||||| |||| |||||| || | || ||||||
Sbjct 1004 ACGTTTTCCTCAATTCAGATGAAAGATCTAAGCATGAAACTGAAACGT-TACCTGGAAAT 1062
Query 1075 GAAAGTGGTGCCAGACTTCTTGTTGGAACTATAAGTGGTCTTGGGACAA-TCCCAGATGA 1133
|||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 1063 GAAAGTGGAGCCAGACTTCTTGTTGGAACTATAAGTGGTCTTGGAACAAGTCC-AGATGA 1121
Query 1134 AGGTTCATGTTATGTCTATGATGGGAATGGTGCTAAGACTCATGTGATAATGAAACATAG 1193
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1122 AGGTTCATGTAATGTCTATGATGGGAATGGTGCTAAAACTCACGTGATAATGAAACATAG 1181
Query 1194 GACATTTCTGGT--GAGACATTTGCACTGGTACAAA-ATTGGGGAAAAGGTTTCCATT-T 1249
|||||||||||| | ||| | | | || | | ||| | || || || |
Sbjct 1182 GACATTTCTGGTTTGTGAC-TC-GTA-TGAT-CTTGCATTTCTTTTCATGTA-CC-TTCT 1235
Query 1250 GTGAATGTAGA---T--GCAGTAGAGCGAAGTTACCACCAAGCAAGTTTTGGTTGTTTGA 1304
| ||| || | | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1236 GCAAAT-TACAACATATGCAGTAGAGCGAAATTACCACCAAGCAAGTTTTGGTTGTTTGA 1294
Query 1305 GCCTCGTTGTGGTTTGCATGATGTCGGAGGATGGTATGTTGAAACTTATGGGAAAGATAA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1295 GCCTCGTTGTGGTTTGCATGATGTCGGAGGATGGTATGTTGAAACTTATGGGAAGGATAA 1354
Query 1365 AAAGAGCAGGACGGTCCTGGCACAAAGATTCTGGGATGGCCTGGAAGAGGGGAGTACACT 1424
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1355 AAAGAGCAGGACGGTCCTGGCTCAAAGATTCTGGGATGGACTGGAAGAGGGGAGTACACT 1414
Query 1425 GGATGGG 1431
|||||||
Sbjct 1415 GGATGGG 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5