BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37490.1 Length=1607 Score E Sequences producing significant alignments: (Bits) Value Ahg490869 jgi|Araly1|490869|fgenesh2_kg.7__302__AT4G37490.1 2338 0.0 > Ahg490869 jgi|Araly1|490869|fgenesh2_kg.7__302__AT4G37490.1 Length=1569 Score = 2338 bits (1266), Expect = 0.0 Identities = 1473/1571 (94%), Gaps = 21/1571 (1%) Strand=Plus/Plus Query 16 TTAGACTTTTTCTACTACAAACCTGAGA-TTTTAGTCT--GAGAGAAAGAGAAGAGAACA 72 |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| Sbjct 1 TTAGTCTTTTTCTACTACAAACCTGAGATTTTTAGTCTGAGAGAGAAAGAGAAGATAACA 60 Query 73 C---TAAGATGATGACTTCTCGTTCGATTGTTCCTCAACAATCCA-CG--GATGATGTTG 126 | ||||||||||||||||||||| |||||||||||||||| | || |||||||||| Sbjct 61 CAAACAAGATGATGACTTCTCGTTCGCTTGTTCCTCAACAATCTACCGAAGATGATGTTG 120 Query 127 TTGTGGTAGATGGCAAAAACGTAGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 186 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGTGGTAGATGGCAAAAACGTTGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 180 Query 187 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGAAAAGATCAATCATCGTC 246 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGCAAAGATCAATCATCGTC 240 Query 247 CTCGTACACGATCTCAAAATCCCACGCTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 306 |||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 241 CTCGTACACGCTCTCAAAATGCCACACTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 300 Query 307 TCAAGAGAAACGCAGTACCAAAGCCGAAGAAAGTGGCTGGGAAACCAAAGGT-AGTAGAC 365 ||||||||| ||||||||||||||| |||||||| ||||||||| ||||||| | |||| Sbjct 301 TCAAGAGAATCGCAGTACCAAAGCCAAAGAAAGTAGCTGGGAAATCAAAGGTTA-TAGAA 359 Query 366 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTTTAGTTGCTGCTCGAGAGAAG 425 ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 360 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTATAGTTGCTGTTCGAGAGAAA 419 Query 426 AAGGCTACTAAGAAGAAAGCGACCACTTACACATCTGTTCTTACTGCTAGAAGCAAGGCT 485 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 420 AAGGCTACTAAGAAGAAAGCAACCACTTACACATCTGTTCTTACCGCTAGAAGCAAGGCT 479 Query 486 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 539 Query 546 GAGAATGACCTCGCAGCTGTGGAATATGTGGAAGATATTTACAGTTTTTACAAGTCTGTT 605 |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 540 AAGAATGACCTTGCAGCTGTGGAATATGTGGAAGATATCTACAGTTTCTACAAGTCTGTT 599 Query 606 GAGAGTGAATGGAGGCCACGAGATTACATGGCATCTCAGCCTGATATTAATGAAAAGATG 665 |||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| Sbjct 600 GAGAGTGAATGGAGGCCACGCGATTACATGGGATCTCAGCCTGAGATTAATGAAAAGATG 659 Query 666 AGACTGATCCTGGTGGAGTGGTTGATTGATGTGCATGTCCGATTCGAGCTAAACCCGGAA 725 ||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 660 AGATTGATTCTGGTGGAGTGGTTGATAGATGTGCATGTCAAATTCGAGCTAAACCCGGAA 719 Query 726 ACATTTTACCTCACTGTTAACATTCTGGATCGGTTCTTGTCGGTTAAGCCAGTGCCTCGA 785 || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 720 ACTTTTTACCTCACTGTGAACATTCTGGATCGCTTCTTGTCGGTGAAGCCAGTGCCTCGA 779 Query 786 AAAGAACTGCAGCTT-GTTGGTCTCAGTGCTCTTCTCATGTCGGCCAAGTATGAAGAAAT 844 |||||| ||||| || |||||||||||||||||||||||||| ||||||| |||||||| Sbjct 780 AAAGAATTGCAG-TTAGTTGGTCTCAGTGCTCTTCTCATGTCATCCAAGTACGAAGAAAT 838 Query 845 TTGGCCACCACAGGTGGAGGATCTAGTTGATATTGCAGACCATGCATACAGTCACAAACA 904 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 839 TTGGCCACCACAGGTGGAAGATCTAGCTGATATTGCAGACCATGCATACAGTCACAAACA 898 Query 905 GATTCTGGTGATGGAGAAGACAATACTGTCTACACTTGAGTGGTACTTGACAGTTCCGAC 964 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 899 GATTCTGGTGATGGAGAAGACAATACTGTCTGCACTTGAGTGGTACTTGACAGTTCCGAC 958 Query 965 TCATTATGTCTTCCTAGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1024 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TCATTATGTCTTCCTGGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1018 Query 1025 TATGGTGCACTATTTGGCTGAGTTAGGCGTAATGCATTACGATACGATGATAATGTTCAG 1084 |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct 1019 TATGGTGCACTATTTGGCAGAGTTAGGTGTAATGCATTACGATACAATGATAATGTTTAG 1078 Query 1085 TCCATCAATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTCCGCCAAGTTCC 1144 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1079 TCCATCTATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTTCGCCAAGTTCC 1138 Query 1145 CATATGGACCAGCACTCTCAAGCATCACACTGGCTATTCTGAGACTCAGCTCATGGACTG 1204 ||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1139 CATTTGGACCAACACTCTCAAGCATCACACTGGCTATTCCGAGACCCAGCTCATGGACTG 1198 Query 1205 TGCAAAGCTGTTGGCGTATCAGCAATGGAAGCAACAAGAAGAAGGGAGTGAGAGCAGTAC 1264 |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct 1199 TGCAAAGCTGTTGGCGTATCAGCAATGGAAACAACAACAAGAAGGGAGTGAGAGTAGTAC 1258 Query 1265 TA--A----GGGAGCTTTACGAAAGAAATACTCCAAGGACGAACGCTTCGCTGTGGCTTT 1318 || | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1259 TACTACTAAGGGAGCTTTACGAAAGAAATACTCCAAGGATGAACGCTTCGCTGTGGCTTT 1318 Query 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCTTAGGAGTTAGGACCCTT 1378 |||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||| Sbjct 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCCTAGGAGCTGGGAGCCTT 1378 Query 1379 TAAGAAGACGAAGAAGCTGAAGAACCAAGCCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1379 TAAGAAGACGGAGAAGCTGAAGAACCAAGTCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438 Query 1439 CTAGTTTCATTAGATAATGGTATTTTGAACAAGTCTAATGAGTCGCTTTGAAACCTAGTC 1498 | |||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| Sbjct 1439 CAAGTTTCATTAGATAATAATATTTTGTACAAGTCTAATGAGTCGCTTTGAAACCAAGTT 1498 Query 1499 CTTTAGCATGATTCATTCCCAAACACT--GCATATCTTGTAAGAAGTCAGTTTCTTCCGA 1556 ||||||||| ||| |||||| ||||| ||||||||||| |||||||||||||||| || Sbjct 1499 CTTTAGCATAATTTATTCCCCAACACAAAGCATATCTTGTGAGAAGTCAGTTTCTTCTGA 1558 Query 1557 GAAGTTTAATT 1567 | ||||||||| Sbjct 1559 GTAGTTTAATT 1569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60220677345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5