BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37490.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490869 jgi|Araly1|490869|fgenesh2_kg.7__302__AT4G37490.1 2338 0.0
> Ahg490869 jgi|Araly1|490869|fgenesh2_kg.7__302__AT4G37490.1
Length=1569
Score = 2338 bits (1266), Expect = 0.0
Identities = 1473/1571 (94%), Gaps = 21/1571 (1%)
Strand=Plus/Plus
Query 16 TTAGACTTTTTCTACTACAAACCTGAGA-TTTTAGTCT--GAGAGAAAGAGAAGAGAACA 72
|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||
Sbjct 1 TTAGTCTTTTTCTACTACAAACCTGAGATTTTTAGTCTGAGAGAGAAAGAGAAGATAACA 60
Query 73 C---TAAGATGATGACTTCTCGTTCGATTGTTCCTCAACAATCCA-CG--GATGATGTTG 126
| ||||||||||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct 61 CAAACAAGATGATGACTTCTCGTTCGCTTGTTCCTCAACAATCTACCGAAGATGATGTTG 120
Query 127 TTGTGGTAGATGGCAAAAACGTAGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 186
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGTGGTAGATGGCAAAAACGTTGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 180
Query 187 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGAAAAGATCAATCATCGTC 246
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGCAAAGATCAATCATCGTC 240
Query 247 CTCGTACACGATCTCAAAATCCCACGCTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 306
|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGTACACGCTCTCAAAATGCCACACTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 300
Query 307 TCAAGAGAAACGCAGTACCAAAGCCGAAGAAAGTGGCTGGGAAACCAAAGGT-AGTAGAC 365
||||||||| ||||||||||||||| |||||||| ||||||||| ||||||| | ||||
Sbjct 301 TCAAGAGAATCGCAGTACCAAAGCCAAAGAAAGTAGCTGGGAAATCAAAGGTTA-TAGAA 359
Query 366 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTTTAGTTGCTGCTCGAGAGAAG 425
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 360 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTATAGTTGCTGTTCGAGAGAAA 419
Query 426 AAGGCTACTAAGAAGAAAGCGACCACTTACACATCTGTTCTTACTGCTAGAAGCAAGGCT 485
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 420 AAGGCTACTAAGAAGAAAGCAACCACTTACACATCTGTTCTTACCGCTAGAAGCAAGGCT 479
Query 486 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 539
Query 546 GAGAATGACCTCGCAGCTGTGGAATATGTGGAAGATATTTACAGTTTTTACAAGTCTGTT 605
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 540 AAGAATGACCTTGCAGCTGTGGAATATGTGGAAGATATCTACAGTTTCTACAAGTCTGTT 599
Query 606 GAGAGTGAATGGAGGCCACGAGATTACATGGCATCTCAGCCTGATATTAATGAAAAGATG 665
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 600 GAGAGTGAATGGAGGCCACGCGATTACATGGGATCTCAGCCTGAGATTAATGAAAAGATG 659
Query 666 AGACTGATCCTGGTGGAGTGGTTGATTGATGTGCATGTCCGATTCGAGCTAAACCCGGAA 725
||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 660 AGATTGATTCTGGTGGAGTGGTTGATAGATGTGCATGTCAAATTCGAGCTAAACCCGGAA 719
Query 726 ACATTTTACCTCACTGTTAACATTCTGGATCGGTTCTTGTCGGTTAAGCCAGTGCCTCGA 785
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 720 ACTTTTTACCTCACTGTGAACATTCTGGATCGCTTCTTGTCGGTGAAGCCAGTGCCTCGA 779
Query 786 AAAGAACTGCAGCTT-GTTGGTCTCAGTGCTCTTCTCATGTCGGCCAAGTATGAAGAAAT 844
|||||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 780 AAAGAATTGCAG-TTAGTTGGTCTCAGTGCTCTTCTCATGTCATCCAAGTACGAAGAAAT 838
Query 845 TTGGCCACCACAGGTGGAGGATCTAGTTGATATTGCAGACCATGCATACAGTCACAAACA 904
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 TTGGCCACCACAGGTGGAAGATCTAGCTGATATTGCAGACCATGCATACAGTCACAAACA 898
Query 905 GATTCTGGTGATGGAGAAGACAATACTGTCTACACTTGAGTGGTACTTGACAGTTCCGAC 964
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GATTCTGGTGATGGAGAAGACAATACTGTCTGCACTTGAGTGGTACTTGACAGTTCCGAC 958
Query 965 TCATTATGTCTTCCTAGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1024
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCATTATGTCTTCCTGGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1018
Query 1025 TATGGTGCACTATTTGGCTGAGTTAGGCGTAATGCATTACGATACGATGATAATGTTCAG 1084
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1019 TATGGTGCACTATTTGGCAGAGTTAGGTGTAATGCATTACGATACAATGATAATGTTTAG 1078
Query 1085 TCCATCAATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTCCGCCAAGTTCC 1144
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 TCCATCTATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTTCGCCAAGTTCC 1138
Query 1145 CATATGGACCAGCACTCTCAAGCATCACACTGGCTATTCTGAGACTCAGCTCATGGACTG 1204
||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1139 CATTTGGACCAACACTCTCAAGCATCACACTGGCTATTCCGAGACCCAGCTCATGGACTG 1198
Query 1205 TGCAAAGCTGTTGGCGTATCAGCAATGGAAGCAACAAGAAGAAGGGAGTGAGAGCAGTAC 1264
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 1199 TGCAAAGCTGTTGGCGTATCAGCAATGGAAACAACAACAAGAAGGGAGTGAGAGTAGTAC 1258
Query 1265 TA--A----GGGAGCTTTACGAAAGAAATACTCCAAGGACGAACGCTTCGCTGTGGCTTT 1318
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 TACTACTAAGGGAGCTTTACGAAAGAAATACTCCAAGGATGAACGCTTCGCTGTGGCTTT 1318
Query 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCTTAGGAGTTAGGACCCTT 1378
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||
Sbjct 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCCTAGGAGCTGGGAGCCTT 1378
Query 1379 TAAGAAGACGAAGAAGCTGAAGAACCAAGCCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 TAAGAAGACGGAGAAGCTGAAGAACCAAGTCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438
Query 1439 CTAGTTTCATTAGATAATGGTATTTTGAACAAGTCTAATGAGTCGCTTTGAAACCTAGTC 1498
| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 1439 CAAGTTTCATTAGATAATAATATTTTGTACAAGTCTAATGAGTCGCTTTGAAACCAAGTT 1498
Query 1499 CTTTAGCATGATTCATTCCCAAACACT--GCATATCTTGTAAGAAGTCAGTTTCTTCCGA 1556
||||||||| ||| |||||| ||||| ||||||||||| |||||||||||||||| ||
Sbjct 1499 CTTTAGCATAATTTATTCCCCAACACAAAGCATATCTTGTGAGAAGTCAGTTTCTTCTGA 1558
Query 1557 GAAGTTTAATT 1567
| |||||||||
Sbjct 1559 GTAGTTTAATT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5