BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37520.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490867 jgi|Araly1|490867|fgenesh2_kg.7__300__AT4G37520.1 1646 0.0
> Ahg490867 jgi|Araly1|490867|fgenesh2_kg.7__300__AT4G37520.1
Length=1162
Score = 1646 bits (891), Expect = 0.0
Identities = 974/1015 (96%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 150 TGGTGAACAAAACGAATCTCTTATTGCTTCTTCTCTCTCTATGTCTCACCCTCGACCTCT 209
|||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||
Sbjct 87 TGGTGAACAAAACGAATCTCTTATTGCTTCTTCTCTCTCTCTTTCTCATCCTCAACCTCT 146
Query 210 CCTCCGCACAACTCCGCCGTAACTTCTACGCCGGAAGTTGTCCTAACGTCGAACAAATCG 269
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 147 CCTCCGCTCAACTCCGCCGCAACTTCTACGCCGGAAGTTGTCCTAACGTCGAGCAAATCG 206
Query 270 TTAGAAACGCCGTACAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTAC 329
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 207 TCAGAAACGCCGTTCAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTCC 266
Query 330 GCCTCTATTTCCATGATTGTTTCGTCAATGGGTGTGATGCATCAGTGATGATAGCGTCAA 389
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 267 GCCTCTATTTCCACGATTGTTTCGTCAATGGGTGTGATGCATCTGTGATGATAGCGTCGA 326
Query 390 CAAATAATAATAAGGCGGAGAAGGATCATGAGGAAAATTTATCGTTGGCCGGAGATGGAT 449
| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 327 CTGATAATAATAAGGCGGAGAAGGATCATGAGGAGAATCTATCGTTGGCCGGAGATGGAT 386
Query 450 TCGACACCGTCATTAAAGCTAAAGAAGCTCTCGATGCCGTCCCAAATTGTCGTAACAAAG 509
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 387 TCGACACCGTCACTAAAGCTAAAGAAGCTCTCGACGCCGTCCCAAATTGTCGTAACAAAG 446
Query 510 TTTCATGCGCTGATATTCTCACGATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGAC 569
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 447 TTTCTTGCGCTGATATTCTCACTATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGAC 506
Query 570 CACAATACGACGTGGAATTGGGAAGGCTAGATGGACTATCATCAACAGCGGCTAGCGTCG 629
|| ||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||
Sbjct 507 CAAAATACGACGTGGAATTGGGAAGGCTGGATGGATTATCGTCAACGGCGGCTAGCGTCG 566
Query 630 GAGGGAAGTTGCCGCATCCGACCGACGATGTCAATAAACTCACTTCACTCTTCGCCAAAA 689
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 567 GAGGGAAGTTGCCTCATCCGACCGACGATGTCAATAAACTCACTTCACTTTTCGCGAAAA 626
Query 690 ACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGCGC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGCGC 686
Query 750 ATTGCACAAAAGTGTTCAATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCCCA 809
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 ATTGCACAAAAGTATTCGATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCCCA 746
Query 810 CGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCGAAACATAGATCCAA 869
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 747 CGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCAAAACATAGATCCAA 806
Query 870 GAGTGGCTATTAACATGGACCCAACAACACCAAGACAATTCGACAACGTTTACTACAAAA 929
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GAGTGGCTATAAACATGGACCCAACAACACCAAGACAATTCGACAACGTTTACTACAAAA 866
Query 930 ACTTGCAACAAGGGAAAGGATTGTTCACGTCGGATCAAGTCTTATTCACGGATCGTCGGT 989
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 867 ACTTGCAACAAGGGAAAGGATTGTTCACGTCTGATCAAGTCTTATTCACAGATCGTCGGT 926
Query 990 CAAAGCCAACCGTTGACTTATGGGCTAATAATGGACAGTTGTTTAATCAAGCTTTTATTA 1049
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 927 CAAAGCCAACCGTTGACTTATGGGCTAGTAATGGACAGTTGTTTAATCAAGCTTTTATTA 986
Query 1050 ACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACTGGTAGTAATGGTAATATCCGTC 1109
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 987 ACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACCGGTAGTAATGGTAATATCCGTC 1046
Query 1110 GTGATTGTGGAGCTTTTAATTGATTTAAATATATCTG-TATTAGATTTTGTTTAT 1163
||||||||||||||||||||| |||| |||||||||| | |||||||||||||||
Sbjct 1047 GTGATTGTGGAGCTTTTAATTAATTTGAATATATCTGGT-TTAGATTTTGTTTAT 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5