BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37540.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490864 jgi|Araly1|490864|fgenesh2_kg.7__297__AT4G37540.1 1319 0.0
Ahg496854 jgi|Araly1|496854|fgenesh2_kg.8__2670__AT5G67420.1 268 4e-71
> Ahg490864 jgi|Araly1|490864|fgenesh2_kg.7__297__AT4G37540.1
Length=985
Score = 1319 bits (714), Expect = 0.0
Identities = 840/901 (93%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 89 TTTTTGTTTTAACAAGTAGAGTTTCCCAAAATATTGGATAT-ATTTCTTTTTCAAATTTC 147
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 66 TTTTTTTTTTAACAAGTAGAGTTTCCCAAAATATTGGATATCACTTCTTTTTCAAATTTC 125
Query 148 GGAAAAGAAATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGC 207
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 126 GGAAAAAAAATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGCGAAACATGC 185
Query 208 ATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCCACGCCACCGTC 267
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 186 ATCCTTCGACCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCCATGCCACTGTC 245
Query 268 TTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAA 327
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||
Sbjct 246 TTCGTCGCTAAATTCTTTGGCCGTGCCGGTCTCATGTCTTTCATCTCCGGCGTACCCGAA 305
Query 328 CTCCAACGTCCTGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAAT 387
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTCCAACGTCCAGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAAT 365
Query 388 CCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCG 447
|| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 366 CCAGTTAACGGAGCGGTTGGTATGTTATGGACTGGGAACTGGCACGTGTGCCAAGCGGCG 425
Query 448 GTTGAGACTGTTCTTCGCGGCGGAACTTTACGACCGATATCAGATCTTCTTGAATCTCCG 507
|||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 426 GTTGAGACTGTTCTTCGCGGCGGAACTTTAAGACCGTTCTCAGATCTTCTTGAATCTCCG 485
Query 508 TCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACGTTTCAAGAAAC 567
|||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 486 CCGTTAATGCTATCCTCCGATGAGTCTTCCGAGATTTGGCATCAAGACGTTTCAAGAAAC 545
Query 568 CAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTG 627
||| | ||||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 546 AAAAACAACCATTGTCACTTCTCCACCTCCAGATCTAAGACGGAGATGAAAGACTCTCTG 605
Query 628 GTTAACCGAAAACGATTGAAGTCCGATTCGGATCTTGATCTCCAAGTGAACCACGGTTTA 687
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 606 GTTAACCGGAAACGATTGAAGTCCGATTCGGATCTTGATCTCCAAATGAACGACGATTTA 665
Query 688 ACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTG 747
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 666 ACCCTAACCGCTCAGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGACGTTTTGTAAGGCG 725
Query 748 GTTAAGGGTGATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAA 807
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GTTAACGGTGATCGGCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAG 785
Query 808 AATGGGATGAGAGGAGATAATaaacaaaaaagaaacaaaggagagaaaaaGTTATTGAAC 867
||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || |||
Sbjct 786 AATGGTATGAGAGGAGATAACAAACAAAGAAGAAACAAAGGAGAGAAAAAGTTGTTAAAC 845
Query 868 CTTTTTGTTTAAAACCGACGACGCAAAACACTCAAAGATTTTGAGGCTCTCTTTT----T 923
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 846 CTTTTTGTTTAAAACCGACGACGCAAAACACTCAAAGATTTTGAGGCTCTTTTTTAGGGT 905
Query 924 TAGG-GTTTTGAGTGGGAATGGATATTTAGTTAATGATTTTTCTCTATCGAGAAATA-TG 981
|| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 906 TATGAGTTATGAGTGGGAATGGATATTTAGTTAATTATTTT-CTCTATCGAGAAATACTG 964
Query 982 A 982
|
Sbjct 965 A 965
> Ahg496854 jgi|Araly1|496854|fgenesh2_kg.8__2670__AT5G67420.1
Length=1314
Score = 268 bits (145), Expect = 4e-71
Identities = 277/340 (81%), Gaps = 11/340 (3%)
Strand=Plus/Plus
Query 151 AAAGAAATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGA-AACATGCAT 209
||| ||||||| |||||||| || | ||||| || ||||||||||| || || || ||
Sbjct 418 AAA-AAATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAGAA-TTGTAT 475
Query 210 CCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGT-CACAAGGCCACGCCACCGTCT 268
||| || || || |||||||||| ||| ||||||| | | ||||| |||||||||||||
Sbjct 476 CCTCCGGCCATGTATTCAATGGATTGAAACCGCCGA-TGCTCAAGGTCACGCCACCGTCT 534
Query 269 TCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTC-TTTCATCTCCTCCGTACCTGAA 327
|||||||||||||||| || ||||||||||||||||| ||| |||||| ||||||| |||
Sbjct 535 TCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTT-ATCTCCGCCGTACCGGAA 593
Query 328 -CTCCAACGTCCTGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAA 386
||| |||||||||||||||||||||| ||| | | ||||| ||||| ||||| |||||
Sbjct 594 TCTC-AACGTCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACTGTGAA 652
Query 387 TCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACT-GGCACGTATGCCAAGCGG 445
||| || |||||||| | || ||||| ||||| |||| | || | | || |||||||
Sbjct 653 TCCAGTAAACGGAGCAATCGGAATGTTATGGACT-GGAAATTGGAATATCTGTCAAGCGG 711
Query 446 CGGTTGAGACTGTTCTTCGCGGCGGAACTTTACGACCGAT 485
| ||||| || || ||||||||||| ||||| |||||||
Sbjct 712 CTGTTGAAACCGTGCTTCGCGGCGGTTCTTTAAGACCGAT 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5