BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37580.1 Length=1846 Score E Sequences producing significant alignments: (Bits) Value Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1 2254 0.0 Ahg932285 jgi|Araly1|932285|scaffold_400273.1 1099 0.0 > Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1 Length=1695 Score = 2254 bits (1220), Expect = 0.0 Identities = 1446/1552 (93%), Gaps = 28/1552 (2%) Strand=Plus/Plus Query 1 CTCCAACTTTtaaaactcatcataaatagtaaaaaagtagccggaaaaataaaataaaaa 60 |||| |||||||||||||||||| || | ||||||||||||||| || |||| ||||| Sbjct 1 CTCCTACTTTTAAAACTCATCAT-AA-A-TAAAAAAGTAGCCGG--GAA-AAAA-AAAAA 53 Query 61 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGCTTTCTCTGTTCTTT 120 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 54 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGC-TTCTCTGTTCTTT 112 Query 121 ACTTATACCTCACGTTATACATATATATAGAGTTTCTATAAATGCTTCTCTTTCCTCTCG 180 |||||||||||||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 113 ACTTATACCTCACG---T---TATATATAGAGTTTCTATAAATGCTTCTCTATCCTCCCG 166 Query 181 AACAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCctctctatatattaaaccc 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 AATAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCCTCTCTATATATTAAACCC 226 Query 241 tatctacttaactcttcttctaactctaatc--tctctctctat-ttactctgcttctgt 297 ||||||||| ||||||||||||||||||||| ||||||||| | || ||| ||||| | Sbjct 227 TATCTACTTCACTCTTCTTCTAACTCTAATCTATCTCTCTCTCTCTT--TCT-CTTCTCT 283 Query 298 -tctcactctGAAAGAACCAAAACATGACGGTGGTTAGAGAGTACGACCCGACCCGAGAC 356 ||| |||| |||||| | |||||||||||||||||||||||||||||||| ||||||| Sbjct 284 ATCTTTCTCTTAAAGAAAC-AAACATGACGGTGGTTAGAGAGTACGACCCGAGCCGAGAC 342 Query 357 TTAGTCGGCGTGGAGGACGTGGAACGACGGTGTGAAGTCGGACCAAGCGGCAAGCTTTCT 416 |||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 343 TTAGCCGGCGTAGAGGACGTGGAGCGACGGTGTGAGGTCGGACCAAGCGGCAAGCTTTCT 402 Query 417 CTTTTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 476 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 CTATTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 462 Query 477 ATGCTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 536 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 ATGTTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 522 Query 537 ATCAAAACCGTTACATGTGGCCAAAAACTCGATTTAAATCA--C-AAATCTCAAAACGAT 593 ||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||| Sbjct 523 ATCAAAACCGTTACATGTGGCAAAAAACTCGATTTAAATCATACTAAATCCCAAAACGAC 582 Query 594 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTCTTGGGCCTTCGCGTCTCTCCTTTT 653 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 583 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTTTTGGGCCTTCGTGTCTCTCCTTTC 642 Query 654 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 702 Query 714 AACGGAGCTGAGTATTCGTATATTGCAACTGAGAACGATAATCAAGCTTCTGTGAATTTG 773 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 703 AACGGTGCTGAATATTCGTATATTGCTACTGAGAACGATAATCAAGCTTCTGTGAATTTG 762 Query 774 TTCACCGGGAAATGTGGTTATTCGGAGTTTCGTACACCGTCGATTTTGGTTAACCCGGTT 833 |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 763 TTCACCGGAAAATGTGGTTATTCTGAGTTTCGTACGCCGTCGATTTTGGTTAATCCGGTT 822 Query 834 TACGCTCATCGAGTTAATGTTTCGCGGCGAGTCACGGTTATCAAGTTAGAGCCGGTTGAT 893 |||||||||||||||||||| || ||||||||||| ||||| || |||| ||||||||| Sbjct 823 TACGCTCATCGAGTTAATGTCTCTCGGCGAGTCACCGTTATTAAACTAGACCCGGTTGAT 882 Query 894 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 942 Query 954 TCGGTACTTAATAACAAACTCTCGCTTGGGACTTTCGTCGCGGTGCCACGTGGAAGCTGT 1013 || || || ||||||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 943 TCTGTTCTCAATAACAAACTCTCGCTCGGGACATTCGTAGCAGTGCCACGTGGAAGCTGT 1002 Query 1014 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATATCCACCCGAG 1073 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1003 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATACCCGCCCGAG 1062 Query 1074 TCATGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCTGTTAGAAGTACGTGGA 1133 || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1063 TCTTGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTACGTGGC 1122 Query 1134 GCGTCGAGATTGAGACGTGTGGTGGCTAAAACGACGCGAGTAGTTGATAAAACGTTGCCG 1193 ||||||||||| ||||| ||||||||||||||||| || || |||||||||||||||||| Sbjct 1123 GCGTCGAGATTAAGACGCGTGGTGGCTAAAACGACTCGCGTGGTTGATAAAACGTTGCCG 1182 Query 1194 TTTCTGAAACTACCTTCGATACCGTCCGTTTTCGAACCTTTTGGACTTCATTTTATGTAT 1253 ||| ||||||| ||||||||||| || ||||| || |||||||| ||||| ||||||||| Sbjct 1183 TTTTTGAAACTCCCTTCGATACCATCTGTTTTTGAGCCTTTTGGGCTTCACTTTATGTAT 1242 Query 1254 GGAATCGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCCTTGTGTGCTCACGCG 1313 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1243 GGAATTGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCGTTGTGTGCTCACGCG 1302 Query 1314 CATAACTTGGCTAAGGCAGGTGGTTGTGGTGTCGTGGCGGCGGAAGTTGCCGGAGAAGAC 1373 |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1303 CATAACTTGGCTAAAGAAGGAGGTTGTGGTGTTGTGGCGGCGGAAGTTGCCGGAGAAGAG 1362 Query 1374 CCGTTGCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGTGACGAGGATCTTTGGTGT 1433 ||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1363 CCGTTACGGCGAGGGATACCACATTGGAAAGTGTTATCGTGTGCCGAGGATCTTTGGTGT 1422 Query 1434 AT-AAAGCGGCTTGGAGATGACTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1492 || ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1423 ATTAAA-CGGCTTGGGGATGATTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1481 Query 1493 ACCTGGCGTTTCCATTTTTGTAGACCCTAGAGAATTTTAAAACttttttttt 1544 |||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1482 ACCTGGCGTTTCAATTTTTGTAGACCCTAGAGAATTTTAAA-CTTTTTTTTT 1532 Score = 193 bits (104), Expect = 5e-48 Identities = 120/127 (94%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 1661 tttttg-ttttgttttgttttgtttttgtGGGTGTTATAAATTAGTGGTAAGAGGTAATA 1719 |||||| |||| || | ||||||||||||||||| | |||||||||||||||||| |||| Sbjct 1548 TTTTTGCTTTTCTTGT-TTTTGTTTTTGTGGGTG-T-TAAATTAGTGGTAAGAGGCAATA 1604 Query 1720 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1605 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1664 Query 1780 TTTTTCT 1786 ||||||| Sbjct 1665 TTTTTCT 1671 > Ahg932285 jgi|Araly1|932285|scaffold_400273.1 Length=1279 Score = 1099 bits (595), Expect = 0.0 Identities = 1031/1237 (83%), Gaps = 48/1237 (4%) Strand=Plus/Plus Query 329 GGTTAGAGAGTACGACCCGACCCGAGACTTAGTCGGCGTGGAGGACGTGGAACGACGGTG 388 ||||||||| |||||||| | ||||||||| | ||| || || || ||||| ||||| Sbjct 38 GGTTAGAGAATACGACCCTAGTAGAGACTTAGCCACCGTTGAAGATGTTGAACGGCGGTG 97 Query 389 TGAAGTCGGACCAAGCGGCAAGCTTTCTCTTTTCACCGACCTTTTGGGTGACCCGATTTG 448 ||||| || |||| ||| || |||||||| |||||||| || || |||||||| ||||| Sbjct 98 CGAAGTTGGCCCAACCGGAAAACTTTCTCTCTTCACCGATCTCTTAGGTGACCCTATTTG 157 Query 449 TAGAATCCGACATTCACCTTCCTATCTCATGCTGGTGGCTGAGATGGGT---ACGGAGAA 505 | | |||||||| ||||| || |||||||||||||||||||| ||| | |||||| Sbjct 158 CCGTGTTCGACATTCTCCTTCTTACCTCATGCTGGTGGCTGAGATTGGTCCGAAGGAGAA 217 Query 506 GAAGGAGATAGTGGGCATGATTAGAGGATGTATCAAAACCGTTACATGT-G--G--CCAA 560 || ||| |||| ||||||||| |||| ||||||||||||||||||||| | | |||| Sbjct 218 TAAAGAGTTAGTTGGCATGATTCGAGGTTGTATCAAAACCGTTACATGTGGTAGTACCAA 277 Query 561 AA-ACTCGATTTAAATC--A-CAAATCTCAAAACGATGTCG---TT---AAGCCTCTTTA 610 || ||||||||||| || | |||||| ||||||||||||| || || || ||||| Sbjct 278 AAGACTCGATTTAACTCATAGCAAATCCCAAAACGATGTCGTTATTACCAAACCACTTTA 337 Query 611 CACTAAACTCGCTTACGTCTTGGGCCTTCGCGTCTCTCCTTTTCACAGGAGACAAGGGAT 670 |||||||||||||||| | ||||| || ||||| |||||| ||| ||||||||||||| Sbjct 338 CACTAAACTCGCTTACATTTTGGGTCTCCGCGTTTCTCCTACACACCGGAGACAAGGGAT 397 Query 671 TGGGTTTAAGCTCGTGAA-GATGATGGAGGAATGGTTTAGACAAAACGGAGCTGAGTATT 729 ||||||||||||||||| | | ||||| || |||||||| |||||||| || || |||| Sbjct 398 AGGGTTTAAGCTCGTGAAGGCT-ATGGAAGATTGGTTTAGTCAAAACGGCGCAGAATATT 456 Query 730 CGTATATTGCAACTGAGAACGATAATCAAGCTTCTGTGAAT-TTGTTCACCGGGAAATGT 788 | ||| |||||||||| ||||| ||||| ||||| || ||| || |||||||| |||||| Sbjct 457 CTTATTTTGCAACTGAAAACGACAATCACGCTTCCGTTAATCTT-TTCACCGGAAAATGT 515 Query 789 GGTTATTCGGAGTTTCGTACACCGTCGATTTTGGTTAACCCGGTTTACGCTCATCGAGTT 848 ||||| || ||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 516 GGTTACTCCGAGTTTCGTACACCGTCGATTTTGGTTAATCCGGTTTACGCACACCGAGTT 575 Query 849 AATGTTTCGCGGCGAGTCACGGTTATCAAG-TTAG-AGCCGGT-TGATGCTGAG--ACGT 903 || |||| || || || || || |||||| || | || | || |||||||||| || Sbjct 576 AACATTTCTCGTCGGGTTACCGTAATCAAGCTT-GAAG-C-GTCTGATGCTGAGTTAC-- 630 Query 904 TGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGATTCGGTACTT- 962 | ||||| |||||||||||||||| |||||||| || || || ||||| ||||| || Sbjct 631 TATACCGGCTCCGGTTTAGCACAACCGAGTTTTTTCCTCGTGACATTGACTCGGT-TTTG 689 Query 963 AATAACAAACTCTCGCTT-GGGACTTTCGTCGCGGTGCCACGTGGAAGCTGTTATGGATC 1021 ||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| Sbjct 690 AATAACAAACTCTCG-TTAGGAACATTCGTTGCGGTTCCACGTGGCAGTTGTTATGGATC 748 Query 1022 CGGG-TCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATATCCACCCGAGTCATGGG 1080 |||| || || |||||||||||||||||||||||||| || ||||||||||| || |||| Sbjct 749 CGGGTTC-GGGTCATGGCCCGGTTCGGCTAAATTCCTGGAGTATCCACCCGATTCGTGGG 807 Query 1081 CCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCTGTTAGAAGTACGTGGAGCGTCGA 1140 | || |||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct 808 CGGTTTTAAGCGTTTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTTCGTGGCGCGTCGA 867 Query 1141 GATTGAGACGTGTGGTGGCTAAAA-CGACGCGAGTAGTTGATAAAACGTTGCCGTTTCTG 1199 ||||||| || ||||| | |||| ||||||| || |||||||||||||| |||||| || Sbjct 868 GATTGAGGCGCGTGGTTTC-AAAAGCGACGCGCGTGGTTGATAAAACGTTACCGTTTTTG 926 Query 1200 AAACTACCTTCGATACCGTCCGTTTT-CGAACCTTTTGGACTTCATTTTATGTATGGAAT 1258 ||| | || ||||| ||| | ||||| || | |||||||| ||||||||||| || || Sbjct 927 AAAATTCCGTCGATTCCGGCAGTTTTCCG-GTCGTTTGGACTGCATTTTATGTACGGCAT 985 Query 1259 CGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCCTTGTGTGCTCACGCGCATAA 1318 ||| |||||||| |||||||||| ||| |||||||| | ||||||| ||| |||||||| Sbjct 986 CGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAGGCGTTGTGTGGTCATGCGCATAA 1045 Query 1319 CTTGGCTAAGGCAGGTGGTTGTGGTGTCGTGGCGGCGGAAGTTGCCGGAGAAGACCCGTT 1378 ||||| |||| ||| || || || ||||||||||||||||| ||||||| ||| ||| | Sbjct 1046 TTTGGCAAAGGAAGGAGGATGCGGCGTCGTGGCGGCGGAAGTAGCCGGAGGAGAGCCGCT 1105 Query 1379 GCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGTGACGAGGATCTT-TGGTGTAT-A 1436 ||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| | Sbjct 1106 CCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGCGCCGAGGAT-TTGTGGTGTATTA 1164 Query 1437 AAGCGGCTTGGAGATGACTATAGTGATGGTGT-TGTTGGTGATTGGACTAAATCGCCACC 1495 || ||||||||||| || |||||||| ||| | ||||||||||||||||||||||||||| Sbjct 1165 AA-CGGCTTGGAGAGGATTATAGTGACGGT-TCTGTTGGTGATTGGACTAAATCGCCACC 1222 Query 1496 TGGCGTTTCCATTTTTGTAGACCCTAGAGAATTTTAA 1532 ||||| ||||||||||| |||||||||||||||||| Sbjct 1223 TGGCGAATCCATTTTTGTTGACCCTAGAGAATTTTAA 1259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69324245900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5