BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37580.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1 2254 0.0
Ahg932285 jgi|Araly1|932285|scaffold_400273.1 1099 0.0
> Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1
Length=1695
Score = 2254 bits (1220), Expect = 0.0
Identities = 1446/1552 (93%), Gaps = 28/1552 (2%)
Strand=Plus/Plus
Query 1 CTCCAACTTTtaaaactcatcataaatagtaaaaaagtagccggaaaaataaaataaaaa 60
|||| |||||||||||||||||| || | ||||||||||||||| || |||| |||||
Sbjct 1 CTCCTACTTTTAAAACTCATCAT-AA-A-TAAAAAAGTAGCCGG--GAA-AAAA-AAAAA 53
Query 61 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGCTTTCTCTGTTCTTT 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 54 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGC-TTCTCTGTTCTTT 112
Query 121 ACTTATACCTCACGTTATACATATATATAGAGTTTCTATAAATGCTTCTCTTTCCTCTCG 180
|||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 113 ACTTATACCTCACG---T---TATATATAGAGTTTCTATAAATGCTTCTCTATCCTCCCG 166
Query 181 AACAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCctctctatatattaaaccc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AATAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCCTCTCTATATATTAAACCC 226
Query 241 tatctacttaactcttcttctaactctaatc--tctctctctat-ttactctgcttctgt 297
||||||||| ||||||||||||||||||||| ||||||||| | || ||| ||||| |
Sbjct 227 TATCTACTTCACTCTTCTTCTAACTCTAATCTATCTCTCTCTCTCTT--TCT-CTTCTCT 283
Query 298 -tctcactctGAAAGAACCAAAACATGACGGTGGTTAGAGAGTACGACCCGACCCGAGAC 356
||| |||| |||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 284 ATCTTTCTCTTAAAGAAAC-AAACATGACGGTGGTTAGAGAGTACGACCCGAGCCGAGAC 342
Query 357 TTAGTCGGCGTGGAGGACGTGGAACGACGGTGTGAAGTCGGACCAAGCGGCAAGCTTTCT 416
|||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 343 TTAGCCGGCGTAGAGGACGTGGAGCGACGGTGTGAGGTCGGACCAAGCGGCAAGCTTTCT 402
Query 417 CTTTTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CTATTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 462
Query 477 ATGCTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATGTTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 522
Query 537 ATCAAAACCGTTACATGTGGCCAAAAACTCGATTTAAATCA--C-AAATCTCAAAACGAT 593
||||||||||||||||||||| ||||||||||||||||||| | ||||| ||||||||
Sbjct 523 ATCAAAACCGTTACATGTGGCAAAAAACTCGATTTAAATCATACTAAATCCCAAAACGAC 582
Query 594 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTCTTGGGCCTTCGCGTCTCTCCTTTT 653
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 583 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTTTTGGGCCTTCGTGTCTCTCCTTTC 642
Query 654 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 702
Query 714 AACGGAGCTGAGTATTCGTATATTGCAACTGAGAACGATAATCAAGCTTCTGTGAATTTG 773
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 703 AACGGTGCTGAATATTCGTATATTGCTACTGAGAACGATAATCAAGCTTCTGTGAATTTG 762
Query 774 TTCACCGGGAAATGTGGTTATTCGGAGTTTCGTACACCGTCGATTTTGGTTAACCCGGTT 833
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 763 TTCACCGGAAAATGTGGTTATTCTGAGTTTCGTACGCCGTCGATTTTGGTTAATCCGGTT 822
Query 834 TACGCTCATCGAGTTAATGTTTCGCGGCGAGTCACGGTTATCAAGTTAGAGCCGGTTGAT 893
|||||||||||||||||||| || ||||||||||| ||||| || |||| |||||||||
Sbjct 823 TACGCTCATCGAGTTAATGTCTCTCGGCGAGTCACCGTTATTAAACTAGACCCGGTTGAT 882
Query 894 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 942
Query 954 TCGGTACTTAATAACAAACTCTCGCTTGGGACTTTCGTCGCGGTGCCACGTGGAAGCTGT 1013
|| || || ||||||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 943 TCTGTTCTCAATAACAAACTCTCGCTCGGGACATTCGTAGCAGTGCCACGTGGAAGCTGT 1002
Query 1014 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATATCCACCCGAG 1073
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1003 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATACCCGCCCGAG 1062
Query 1074 TCATGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCTGTTAGAAGTACGTGGA 1133
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1063 TCTTGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTACGTGGC 1122
Query 1134 GCGTCGAGATTGAGACGTGTGGTGGCTAAAACGACGCGAGTAGTTGATAAAACGTTGCCG 1193
||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 1123 GCGTCGAGATTAAGACGCGTGGTGGCTAAAACGACTCGCGTGGTTGATAAAACGTTGCCG 1182
Query 1194 TTTCTGAAACTACCTTCGATACCGTCCGTTTTCGAACCTTTTGGACTTCATTTTATGTAT 1253
||| ||||||| ||||||||||| || ||||| || |||||||| ||||| |||||||||
Sbjct 1183 TTTTTGAAACTCCCTTCGATACCATCTGTTTTTGAGCCTTTTGGGCTTCACTTTATGTAT 1242
Query 1254 GGAATCGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCCTTGTGTGCTCACGCG 1313
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1243 GGAATTGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCGTTGTGTGCTCACGCG 1302
Query 1314 CATAACTTGGCTAAGGCAGGTGGTTGTGGTGTCGTGGCGGCGGAAGTTGCCGGAGAAGAC 1373
|||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1303 CATAACTTGGCTAAAGAAGGAGGTTGTGGTGTTGTGGCGGCGGAAGTTGCCGGAGAAGAG 1362
Query 1374 CCGTTGCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGTGACGAGGATCTTTGGTGT 1433
||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1363 CCGTTACGGCGAGGGATACCACATTGGAAAGTGTTATCGTGTGCCGAGGATCTTTGGTGT 1422
Query 1434 AT-AAAGCGGCTTGGAGATGACTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1492
|| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ATTAAA-CGGCTTGGGGATGATTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1481
Query 1493 ACCTGGCGTTTCCATTTTTGTAGACCCTAGAGAATTTTAAAACttttttttt 1544
|||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1482 ACCTGGCGTTTCAATTTTTGTAGACCCTAGAGAATTTTAAA-CTTTTTTTTT 1532
Score = 193 bits (104), Expect = 5e-48
Identities = 120/127 (94%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1661 tttttg-ttttgttttgttttgtttttgtGGGTGTTATAAATTAGTGGTAAGAGGTAATA 1719
|||||| |||| || | ||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 1548 TTTTTGCTTTTCTTGT-TTTTGTTTTTGTGGGTG-T-TAAATTAGTGGTAAGAGGCAATA 1604
Query 1720 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1664
Query 1780 TTTTTCT 1786
|||||||
Sbjct 1665 TTTTTCT 1671
> Ahg932285 jgi|Araly1|932285|scaffold_400273.1
Length=1279
Score = 1099 bits (595), Expect = 0.0
Identities = 1031/1237 (83%), Gaps = 48/1237 (4%)
Strand=Plus/Plus
Query 329 GGTTAGAGAGTACGACCCGACCCGAGACTTAGTCGGCGTGGAGGACGTGGAACGACGGTG 388
||||||||| |||||||| | ||||||||| | ||| || || || ||||| |||||
Sbjct 38 GGTTAGAGAATACGACCCTAGTAGAGACTTAGCCACCGTTGAAGATGTTGAACGGCGGTG 97
Query 389 TGAAGTCGGACCAAGCGGCAAGCTTTCTCTTTTCACCGACCTTTTGGGTGACCCGATTTG 448
||||| || |||| ||| || |||||||| |||||||| || || |||||||| |||||
Sbjct 98 CGAAGTTGGCCCAACCGGAAAACTTTCTCTCTTCACCGATCTCTTAGGTGACCCTATTTG 157
Query 449 TAGAATCCGACATTCACCTTCCTATCTCATGCTGGTGGCTGAGATGGGT---ACGGAGAA 505
| | |||||||| ||||| || |||||||||||||||||||| ||| | ||||||
Sbjct 158 CCGTGTTCGACATTCTCCTTCTTACCTCATGCTGGTGGCTGAGATTGGTCCGAAGGAGAA 217
Query 506 GAAGGAGATAGTGGGCATGATTAGAGGATGTATCAAAACCGTTACATGT-G--G--CCAA 560
|| ||| |||| ||||||||| |||| ||||||||||||||||||||| | | ||||
Sbjct 218 TAAAGAGTTAGTTGGCATGATTCGAGGTTGTATCAAAACCGTTACATGTGGTAGTACCAA 277
Query 561 AA-ACTCGATTTAAATC--A-CAAATCTCAAAACGATGTCG---TT---AAGCCTCTTTA 610
|| ||||||||||| || | |||||| ||||||||||||| || || || |||||
Sbjct 278 AAGACTCGATTTAACTCATAGCAAATCCCAAAACGATGTCGTTATTACCAAACCACTTTA 337
Query 611 CACTAAACTCGCTTACGTCTTGGGCCTTCGCGTCTCTCCTTTTCACAGGAGACAAGGGAT 670
|||||||||||||||| | ||||| || ||||| |||||| ||| |||||||||||||
Sbjct 338 CACTAAACTCGCTTACATTTTGGGTCTCCGCGTTTCTCCTACACACCGGAGACAAGGGAT 397
Query 671 TGGGTTTAAGCTCGTGAA-GATGATGGAGGAATGGTTTAGACAAAACGGAGCTGAGTATT 729
||||||||||||||||| | | ||||| || |||||||| |||||||| || || ||||
Sbjct 398 AGGGTTTAAGCTCGTGAAGGCT-ATGGAAGATTGGTTTAGTCAAAACGGCGCAGAATATT 456
Query 730 CGTATATTGCAACTGAGAACGATAATCAAGCTTCTGTGAAT-TTGTTCACCGGGAAATGT 788
| ||| |||||||||| ||||| ||||| ||||| || ||| || |||||||| ||||||
Sbjct 457 CTTATTTTGCAACTGAAAACGACAATCACGCTTCCGTTAATCTT-TTCACCGGAAAATGT 515
Query 789 GGTTATTCGGAGTTTCGTACACCGTCGATTTTGGTTAACCCGGTTTACGCTCATCGAGTT 848
||||| || ||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 516 GGTTACTCCGAGTTTCGTACACCGTCGATTTTGGTTAATCCGGTTTACGCACACCGAGTT 575
Query 849 AATGTTTCGCGGCGAGTCACGGTTATCAAG-TTAG-AGCCGGT-TGATGCTGAG--ACGT 903
|| |||| || || || || || |||||| || | || | || |||||||||| ||
Sbjct 576 AACATTTCTCGTCGGGTTACCGTAATCAAGCTT-GAAG-C-GTCTGATGCTGAGTTAC-- 630
Query 904 TGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGATTCGGTACTT- 962
| ||||| |||||||||||||||| |||||||| || || || ||||| ||||| ||
Sbjct 631 TATACCGGCTCCGGTTTAGCACAACCGAGTTTTTTCCTCGTGACATTGACTCGGT-TTTG 689
Query 963 AATAACAAACTCTCGCTT-GGGACTTTCGTCGCGGTGCCACGTGGAAGCTGTTATGGATC 1021
||||||||||||||| || || || ||||| ||||| |||||||| || |||||||||||
Sbjct 690 AATAACAAACTCTCG-TTAGGAACATTCGTTGCGGTTCCACGTGGCAGTTGTTATGGATC 748
Query 1022 CGGG-TCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATATCCACCCGAGTCATGGG 1080
|||| || || |||||||||||||||||||||||||| || ||||||||||| || ||||
Sbjct 749 CGGGTTC-GGGTCATGGCCCGGTTCGGCTAAATTCCTGGAGTATCCACCCGATTCGTGGG 807
Query 1081 CCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCTGTTAGAAGTACGTGGAGCGTCGA 1140
| || |||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 808 CGGTTTTAAGCGTTTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTTCGTGGCGCGTCGA 867
Query 1141 GATTGAGACGTGTGGTGGCTAAAA-CGACGCGAGTAGTTGATAAAACGTTGCCGTTTCTG 1199
||||||| || ||||| | |||| ||||||| || |||||||||||||| |||||| ||
Sbjct 868 GATTGAGGCGCGTGGTTTC-AAAAGCGACGCGCGTGGTTGATAAAACGTTACCGTTTTTG 926
Query 1200 AAACTACCTTCGATACCGTCCGTTTT-CGAACCTTTTGGACTTCATTTTATGTATGGAAT 1258
||| | || ||||| ||| | ||||| || | |||||||| ||||||||||| || ||
Sbjct 927 AAAATTCCGTCGATTCCGGCAGTTTTCCG-GTCGTTTGGACTGCATTTTATGTACGGCAT 985
Query 1259 CGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCCTTGTGTGCTCACGCGCATAA 1318
||| |||||||| |||||||||| ||| |||||||| | ||||||| ||| ||||||||
Sbjct 986 CGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAGGCGTTGTGTGGTCATGCGCATAA 1045
Query 1319 CTTGGCTAAGGCAGGTGGTTGTGGTGTCGTGGCGGCGGAAGTTGCCGGAGAAGACCCGTT 1378
||||| |||| ||| || || || ||||||||||||||||| ||||||| ||| ||| |
Sbjct 1046 TTTGGCAAAGGAAGGAGGATGCGGCGTCGTGGCGGCGGAAGTAGCCGGAGGAGAGCCGCT 1105
Query 1379 GCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGTGACGAGGATCTT-TGGTGTAT-A 1436
||||||||||||||||||||||||||||||||||| | ||||||| || |||||||| |
Sbjct 1106 CCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGCGCCGAGGAT-TTGTGGTGTATTA 1164
Query 1437 AAGCGGCTTGGAGATGACTATAGTGATGGTGT-TGTTGGTGATTGGACTAAATCGCCACC 1495
|| ||||||||||| || |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1165 AA-CGGCTTGGAGAGGATTATAGTGACGGT-TCTGTTGGTGATTGGACTAAATCGCCACC 1222
Query 1496 TGGCGTTTCCATTTTTGTAGACCCTAGAGAATTTTAA 1532
||||| ||||||||||| ||||||||||||||||||
Sbjct 1223 TGGCGAATCCATTTTTGTTGACCCTAGAGAATTTTAA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5