BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37608.1

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328011 jgi|Araly1|328011|fgenesh1_pm.C_scaffold_7000238           416    9e-116
  Ahg490858 jgi|Araly1|490858|fgenesh2_kg.7__291__AT4G37610.1          139    2e-32 


> Ahg328011 jgi|Araly1|328011|fgenesh1_pm.C_scaffold_7000238
Length=264

 Score =  416 bits (225),  Expect = 9e-116
 Identities = 251/264 (95%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  200  ATGGAACCGCAACATACCGATGATGTGTTGAAGCATTTGGAGAAACAGACTGAATTACTC  259
            ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||
Sbjct  1    ATGGAACCGCAACATACCGATGATGTGTTAAAGCATTTGGAGAAACAGAAGGAATTACTC  60

Query  260  AAAGAAGCTCAAAAGAACATGTTGCAAGAACTCCAAAAACTTGAGGTTGAACATGAGACG  319
            |||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   AAAGAAGCTCATCAGACCATGTTGCAAGAACTCCAAAAACTCGAGGTTGAACATGAGACG  120

Query  320  ATGATGCGTAAACTCTATGAGCTTATGAACACTCATAGTTTAAATAAAAAGAAAATGGAG  379
            ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct  121  ATGATGCGTAAACTCTATGAGCTAATGAACACTCATACTTTAAATCAAAAGAAAATGGAG  180

Query  380  GAAACTCAAAATGTGTTGGAGGGAAGAGAAACAATTGAAGCTTCATCTCCTTCAACTGTA  439
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct  181  GAAACTCAAAATGTGTTGGAGGGAAGAGAAACAATTGAAGCTTCATCTCAATCAACTGTA  240

Query  440  ACTACTAATGATGAAGAACATTGA  463
            |||||| |||||||||||||||||
Sbjct  241  ACTACTGATGATGAAGAACATTGA  264


> Ahg490858 jgi|Araly1|490858|fgenesh2_kg.7__291__AT4G37610.1
Length=1377

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 116/133 (87%), Gaps = 13/133 (10%)
 Strand=Plus/Minus

Query  515   GGGCCAAAGATTGGATCTTAGGT-TTGAAAATTTTG-A------ATCTATCTTTACAAAG  566
             ||||||||||||||||||||||| ||| |||||||| |      ||||||||||||||||
Sbjct  1377  GGGCCAAAGATTGGATCTTAGGTATTG-AAATTTTGAACCTCGGATCTATCTTTACAAAG  1319

Query  567   AATCTGCAACCTATGTACA-TGTATAAATATGTAATTTCTACATCTAAAAGCAATCAAAT  625
             ||||||||||||||||||| |||||||||||| ||| |||| |||||||||| || ||| 
Sbjct  1318  AATCTGCAACCTATGTACAATGTATAAATATGCAATCTCTATATCTAAAAGCGAT-AAA-  1261

Query  626   AATAATGTCATAA  638
             | |||||||||||
Sbjct  1260  A-TAATGTCATAA  1249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24398666880


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5