BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37610.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490858 jgi|Araly1|490858|fgenesh2_kg.7__291__AT4G37610.1 1832 0.0
> Ahg490858 jgi|Araly1|490858|fgenesh2_kg.7__291__AT4G37610.1
Length=1377
Score = 1832 bits (992), Expect = 0.0
Identities = 1238/1351 (92%), Gaps = 40/1351 (3%)
Strand=Plus/Plus
Query 106 TTATCAACAGAGGATAAGGATAA-AACCCAGAACAATCATTATAATTTAGTGGTGAAGTT 164
|||||| |||||||| | |||| || ||||||||||| || |||||||||||||||
Sbjct 49 TTATCACCAGAGGAT-A--ATAATAA-TCAGAACAATCA-TA-GTTTTAGTGGTGAAGTT 102
Query 165 GACCAAATTTATAAACTGATCCAAT-TTTAAAATC-TAAGAGATATGGAGAACATGGACG 222
|| ||||||||||||||||| |||| || || || || ||| ||||||||||| ||||
Sbjct 103 GAACAAATTTATAAACTGAT-CAATATTCGAATTCAAAAAAGA-ATGGAGAACATTGACG 160
Query 223 ATTTCTCACCGGAGAATGTTTTAGCACCA-C--CACCA-C--CACCTCCTCCAATGAAGA 276
||||||||||||| || | | ||||||| | ||||| | |||||||||| | || |
Sbjct 161 ATTTCTCACCGGAAAAAGCCTCAGCACCACCAACACCACCAACACCTCCTCCGGT-AA-A 218
Query 277 AGTCAACGGATCTGTTTATGCAAAGAAGCAATAGCTTTGTTTCTAAAGCTACGAGAGATT 336
| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 219 A-TCAATGGATCTGTTTATGCAAAGAAGCAATAGTTTTGTTTCTAAAGCTACAAGAGATT 277
Query 337 CATGGGATCGTATGTTCGACGAAGCTCATGGAGCTGATGTTTTGATTCATACTGATGATA 396
|||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||
Sbjct 278 CATGGGATCGTATGTTTGATGGAGCTCATGGAGCTGATGTTTTGATTCATACTGATCATA 337
Query 397 ATGGTTTGATTTACGCACATTCTAATGTCATCGGAATGGCTTCAGATGTAATCAGAGGAA 456
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ATGGTTTGATTTACGCGCATTCTAATGTCATCGGAATGGCTTCAGATGTAATCAGAGGAA 397
Query 457 TGATGAAGCAACATAAGAGAAAATCTCATCGTAAATCGATTTCAATCCTCGGTGTTCCTC 516
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 TGATGAAGCAAGATAAGAGAAAATCTCATCGTAAATCGATTTCAATCCTCGGTGTCCCTC 457
Query 517 ACCACGCTCTTCGAGTTTTCATTCGATTCTTATACTCTTCTTGCTATGAGAAACAAGATA 576
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ACGATGCTGTTCGAGTTTTCATTCGATTCTTATACTCTTCTTGCTATGAGAAACAAGATA 517
Query 577 TGGAGGATTTTGCAATACATCTACTTGTGTTATCACATGTCTACGTTGTACCGCATTTGA 636
|||| ||||| ||||| ||||| |||||| |||||||||||||||| || ||||||||||
Sbjct 518 TGGAAGATTTCGCAATGCATCTTCTTGTGCTATCACATGTCTACGTGGTTCCGCATTTGA 577
Query 637 AGCGAGTCTGCGAATCAGAATTCGAAAGTAGTTTGCTCAACAAAGAGAATGTGATTGATG 696
| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 578 AACGAGTGTGCGAATCAGAATTCGAAAACATTTTGCTCAACAAAGAGAATGTGATTGATG 637
Query 697 TGTTTCAGCTAGCTCTTCTATGTGATGCTCCTCGTCTCGGTCTTCTCTGTCATAGAATGA 756
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 638 TGTTTCAGCTAGCTCTTCTCTGTGATGCTCCTCGTCTCGGTCTTCTCTGTCACAGAATGA 697
Query 757 TTCTAAACAACTTTGAAGAAGTTTCTACTTCTGAAGGATGGCAAGCAATGAAAGAGAGCC 816
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTCTAAAGAACTTTGAAGAAGTTTCTACTTCTGAAGGATGGCAAGCAATGAAAGAGAGCC 757
Query 817 ATCCTAGACTTCAAAAAGAGCTTTTACGCTCTGTCGCTTACGAGCTTAATAGCTTGAAGC 876
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ATCCTAGACTTCAAAAGGAGCTTTTACGCTCTGTCGCTTACGAGCTTAATAGCTTGAAGC 817
Query 877 AAAGAAACAGGAAACAGAAGGAGATACAGACTTATACACAGCTCTATGAAGCAATGGAGG 936
||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| |
Sbjct 818 AAAGAAACAGGAAACAGAAAGAGATACAGACATACACACAGCTATATGAAGCAATGGAAG 877
Query 937 CTTTTGTTCATATATGTAGAGATGGATGCAGAGAAATAGGTCCAACAAAGACCGAAACCC 996
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CTTTTGTTCATATTTGTAGAGATGGATGCAGAGAAATAGGTCCAACAAAGACCGAAACCC 937
Query 997 CGCATATGTCATGCGGATTTCAAGCGTGTAATGGTTTAGAGCAGCTATTGAAACATTTGG 1056
||||| | || || |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 938 CGCATGTCTCGTGTGGATTTCAAGCGTGCAACGGTTTAGAGCAGCTATTGAAACATTTGG 997
Query 1057 CGGGATGCAAACTAAGATCAATCCCTGGTGGTTGTAGCCGTTGCAAGAGAATGTGGCAGC 1116
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 998 CGGGATGCAAACTAAGATCAATCCCTGGTGGTTGCAGCCGTTGCAAGAGAATGTGGCAGC 1057
Query 1117 TTCTTGAGCTTCATTCGCGCATTTGCGTAGACTCGGAACAATGCAAAGTCCCTCTTTGCA 1176
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1058 TTCTTGAGCTTCATTCGCGTATTTGCGTAGACTCGGAACAATGTAAAGTCCCTCTTTGCA 1117
Query 1177 GTAGTTTGAAAGAGAGGATGAAGACACAGAGCAGGAAAGATGAGAAAAGATGGAAACTTT 1236
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1118 GTAGTTTGAAGGAGAGGATGAAGACACAAAGCAGGAAAGATGAGAAAAGATGGAAACTTT 1177
Query 1237 TGGTGAGGAATGTTTTGAGCACCAAGAGAATTGGAGGATCTCCATTCTTTTTGCAAGCAA 1296
| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1178 TAGTGAAGAATGTTTTGAGCACCAAGAGAATTGGAGGATCGCCATTCTTTTTGCAGGCTA 1237
Query 1297 TTGATGTTACTTTATGAGTTATGACATTATTATTTGATTGCTTTTAGATGTAGAAATTAC 1356
||||||||||||||||| ||||||| || || |||||||||| |||| ||| |
Sbjct 1238 TTGATGTTACTTTATGA-------CATTATT-TT--ATCGCTTTTAGATATAGAGATTGC 1287
Query 1357 ATATTTATACAT-GTACATAGGTTGCAGATTCTTTGTAAAGATAGAT------T-CAAAA 1408
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 1288 ATATTTATACATTGTACATAGGTTGCAGATTCTTTGTAAAGATAGATCCGAGGTTCAAAA 1347
Query 1409 TTTTCAA-ACCTAAGATCCAATCTTTGGCCC 1438
||| ||| |||||||||||||||||||||||
Sbjct 1348 TTT-CAATACCTAAGATCCAATCTTTGGCCC 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5