BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37630.1 Length=1604 Score E Sequences producing significant alignments: (Bits) Value Ahg490856 jgi|Araly1|490856|fgenesh2_kg.7__289__AT4G37630.1 1818 0.0 Ahg932898 jgi|Araly1|932898|scaffold_400886.1 351 7e-96 > Ahg490856 jgi|Araly1|490856|fgenesh2_kg.7__289__AT4G37630.1 Length=1399 Score = 1818 bits (984), Expect = 0.0 Identities = 1231/1345 (92%), Gaps = 38/1345 (3%) Strand=Plus/Plus Query 207 CGCCGCCGTTAAATGGGTGAGCCTAAAGACAGTCTCGCTCTCTTCCTCTGCCACGAATCG 266 ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| Sbjct 80 CGCCGCCGTTAAATGGGTGAGCCCAGTGACAGTCTCGCTCTCTTTCTCTGCCACGAATCC 139 Query 267 GAGTCTTCTCTAAACGAAGACGACGACGAGACGATTGAGAGATCTGATAAGCAAGAACCT 326 |||||||||||||||||||||||||| ||| || |||||||||| || | | Sbjct 140 GAGTCTTCTCTAAACGAAGACGACGA-AAGA--ATCGAGAGATCTG---AG---G-A--G 187 Query 327 CACTTTACTACTACGATC---GATGATGAAGATTATGTGGCAGACCTTGTTCTTAAAGAG 383 |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 188 CACTTTCCTACTACGATCGGTGATGATGAAGATTATGTGGCAGAGCTTGTTCTTAAAGAG 247 Query 384 AATCTCCGATTCGAAACCCTACCCTCTAAAACGACGTCGTCT-TCCGATAGATTGATTGC 442 |||| ||||||||||| |||| ||||||||||||||||| | ||||||||||||||| Sbjct 248 AATCGGAGATTCGAAACCGAACCCACTAAAACGACGTCGTCTGT-CGATAGATTGATTGC 306 Query 443 CATCGATTGGATTCTCACTACAAGAACAAGATTTGGGTTCCAACATCAAACAGCTTACAT 502 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 307 AATCGATTGGATTCTCACTACAAGAACAAGATTTGGATTCCAACAGCAAACAGCTTACAT 366 Query 503 TGCAATCTCATACTTCGATCTGTTTCTCCACAAAAGATTCATCGGTTTGCAGAAAGATGA 562 ||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||| Sbjct 367 TGCAATCTCATACTTGGATCTGTTTCTCCAGAGAAGATTCATCGGTTTGCAGAGAGATGA 426 Query 563 AACATGGGCGATGCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCTAAAATGGAGGA 622 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 427 AACATGGGCGATTCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCGAAAATGGAGGA 486 Query 623 ACGTATTGTTCCTGGTTTATCACAATACCCTCAAGATCATGACTTCGTTTTCAAACCCGA 682 ||| ||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| Sbjct 487 ACGAATTGTTCCTGGATTATCACAATACCCTCAAGATCATGATTTTGTTTTCAAATCCGA 546 Query 683 TGTCATTCGTAAAACTGAACTGTTGATTCTATCCACATTGGACTGGAAGATGAACTTGAT 742 ||| ||||||||||||||| || || ||||||| |||||||| ||||| |||||||| || Sbjct 547 TGTGATTCGTAAAACTGAATTGCTGGTTCTATCGACATTGGATTGGAAAATGAACTTAAT 606 Query 743 CACTCCTTTTCATTACTTCAACTACTTCCTTGCTAAAATCTCTCAGGACAACCATTCTGT 802 |||||||||||||||||| ||||||||| ||||||||| ||||| | |||||||||| Sbjct 607 CACTCCTTTTCATTACTTGAACTACTTCGTTGCTAAAACCTCTC---CCGACCATTCTGT 663 Query 803 TTCTAAAGACTTGGTGTTGTTAAGATCCTCTGATTCTCTTCTTGCTTTAACTAAAGAGAT 862 ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 664 TTCTAAAGAGTTGGTTTTGTTAAGATCCTCTGATTCTCTTCTTGCTCTAACTAAAGAGAT 723 Query 863 AAGTTTTACGGAGTATCGACAGTTTGTTGTTGCTGCTGTTACTACATTGCTAGCTTCTTC 922 |||||||||||| ||||||||||| ||||||||||||||||||||| || ||| |||| Sbjct 724 AAGTTTTACGGATTATCGACAGTTCGTTGTTGCTGCTGTTACTACAATGTTAG---CTTC 780 Query 923 TTCTACCTCATCGGATATTAGATTGACTAGAGAAGAGATAGCTAACAAGTTTGGTTCGAT 982 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 781 TTCTACTTCATCGGATATTAGATTGACGAGAGAAGAGATAGCGAACAAGTTTGGATCGAT 840 Query 983 CTCTTGGTGGACTTCTAATGAGAATGAAAATGTATATTTGTGTTATCAGAGAACGCTAGA 1042 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 841 TTCTTGGTGGACGTCTAATGAAAATGATAATGTATATTTGTGTTATCAGAGAATGCTAGA 900 Query 1043 GATTGAGGAGAGGAAACATATGACACCTCCACCGGAAATAGCGGTTTCTCGCGAACCGCC 1102 ||||||||||||||||||||||||||| || ||||||||||||||| | |||||||| || Sbjct 901 GATTGAGGAGAGGAAACATATGACACCGCCGCCGGAAATAGCGGTTCCCCGCGAACCACC 960 Query 1103 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATTCTGATCAAAGTTCTCC 1162 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 961 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATCCTGATCAAACTTCTCC 1020 Query 1163 ACCAGCCAAGAGAATGCGTAGGCTATGAAGAGAGAGTTTCTTTCTTCTTCAAGTTTTGGC 1222 ||||||||||||| ||||||||| || | |||||||| |||||||||| |||||||||| Sbjct 1021 TCCAGCCAAGAGAACGCGTAGGCTCTG-A-AGAGAGTTACTTTCTTCTTGAAGTTTTGGC 1078 Query 1223 TTATATTGATTTGGTTTCTTTTTTGGCAACATATTGATTTGG-TTTTATATTCAATCATT 1281 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1079 TTATATTGATTTGGTTTCTTTTTTGGCAACATATTGATTTGGTTTTTATATTCAATCATT 1138 Query 1282 TGATTATAGAG-AAAAAATGGTCTGAATAC-ATCGGTTATTTCAATTTTTATGAAGTAAC 1339 ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1139 TGATTATAGAGAAAAAAATGGTCTGAATACAAT-GGTTATTTCAATTTTTATGAAGTAAC 1197 Query 1340 TCATATAGGTTCTTCGTATGAAGGTCTTTGGA-TTT-C--TTGGGGATGAAATGTGACTA 1395 ||||||||||||||| |||||||||||||||| ||| | |||||| |||||||||||| Sbjct 1198 TCATATAGGTTCTTCTTATGAAGGTCTTTGGATTTTACTTTTGGGG-TGAAATGTGACT- 1255 Query 1396 TT-AAAACATTAGGGGCTTCTCTGAGAGAATCT-AGGAAATATGAGGAGTGAATGTAAAT 1453 || |||||||||||||||| | ||||||||| | | |||||| ||||||||||||||||| Sbjct 1256 TTCAAAACATTAGGGGCTTTTTTGAGAGAAT-TAATGAAATAAGAGGAGTGAATGTAAAT 1314 Query 1454 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1374 Query 1514 GGTTTCACATCCTCttttatttttt 1538 ||||||||||||||||||||||||| Sbjct 1375 GGTTTCACATCCTCTTTTATTTTTT 1399 Score = 67.6 bits (36), Expect = 3e-10 Identities = 43/46 (93%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 106 TTTATAATTCCCCTTTTGATGTGTACGGACACACCACCGAAGCAGA 151 ||||||||| ||| |||||||||||||||||||||||||||| ||| Sbjct 20 TTTATAATT-CCC-TTTGATGTGTACGGACACACCACCGAAGAAGA 63 > Ahg932898 jgi|Araly1|932898|scaffold_400886.1 Length=385 Score = 351 bits (190), Expect = 7e-96 Identities = 263/297 (89%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 712 TATCCACATTGGACTGGAAGATGAACTTGATCACTCCTTTTCATTACTTCAACTACTTCC 771 |||| |||||||| ||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct 1 TATCAACATTGGATTGGAAAATGAACTTAATCACTCCTTTTCATTACTTGAAGTACTTCC 60 Query 772 TTGCTAAAATCTCTCAGGACAACCATTCTGTTTCTAAAGACTTGGTGTTGTTAAGATCCT 831 |||||| |||||||| | ||||||||||||||||||| ||||| |||||||| |||| Sbjct 61 TTGCTACAATCTCTC---CCGACCATTCTGTTTCTAAAGAGTTGGTTTTGTTAAGTTCCT 117 Query 832 CTGATTCTCTTCTTGCTTTAACTAAAGAGATAAGTTTTACGGAGTATCGACAGTTTGTTG 891 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| Sbjct 118 CTGATTCTCTTCTTGCTCTAACTAAAGAGATAAGTTTTACGGATTATCGACAGTTCGTTG 177 Query 892 TTGCTGCTGTTACTACATTGCTAGCTTCTTCTTCTACCTCATCGGATATTAGATTGACTA 951 |||||| |||||||| | || ||||| ||||| || |||||||||||||||||||| | Sbjct 178 TTGCTGTTGTTACTATAATGTTAGCTACTTCTACT---TCATCGGATATTAGATTGACGA 234 Query 952 GAGAAGAGATAGCTAACAAGTTTGGTTCGATCTCTTGGTGGACTTCTAATGAGAATG 1008 ||||||||||| | ||||||||| |||||||||||||||||||||||||||||| Sbjct 235 GAGAAGAGATACCGAACAAGTTT----CGATCTCTTGGTGGACTTCTAATGAGAATG 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60106406610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5