BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37630.1
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490856 jgi|Araly1|490856|fgenesh2_kg.7__289__AT4G37630.1 1818 0.0
Ahg932898 jgi|Araly1|932898|scaffold_400886.1 351 7e-96
> Ahg490856 jgi|Araly1|490856|fgenesh2_kg.7__289__AT4G37630.1
Length=1399
Score = 1818 bits (984), Expect = 0.0
Identities = 1231/1345 (92%), Gaps = 38/1345 (3%)
Strand=Plus/Plus
Query 207 CGCCGCCGTTAAATGGGTGAGCCTAAAGACAGTCTCGCTCTCTTCCTCTGCCACGAATCG 266
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 80 CGCCGCCGTTAAATGGGTGAGCCCAGTGACAGTCTCGCTCTCTTTCTCTGCCACGAATCC 139
Query 267 GAGTCTTCTCTAAACGAAGACGACGACGAGACGATTGAGAGATCTGATAAGCAAGAACCT 326
|||||||||||||||||||||||||| ||| || |||||||||| || | |
Sbjct 140 GAGTCTTCTCTAAACGAAGACGACGA-AAGA--ATCGAGAGATCTG---AG---G-A--G 187
Query 327 CACTTTACTACTACGATC---GATGATGAAGATTATGTGGCAGACCTTGTTCTTAAAGAG 383
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 188 CACTTTCCTACTACGATCGGTGATGATGAAGATTATGTGGCAGAGCTTGTTCTTAAAGAG 247
Query 384 AATCTCCGATTCGAAACCCTACCCTCTAAAACGACGTCGTCT-TCCGATAGATTGATTGC 442
|||| ||||||||||| |||| ||||||||||||||||| | |||||||||||||||
Sbjct 248 AATCGGAGATTCGAAACCGAACCCACTAAAACGACGTCGTCTGT-CGATAGATTGATTGC 306
Query 443 CATCGATTGGATTCTCACTACAAGAACAAGATTTGGGTTCCAACATCAAACAGCTTACAT 502
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 307 AATCGATTGGATTCTCACTACAAGAACAAGATTTGGATTCCAACAGCAAACAGCTTACAT 366
Query 503 TGCAATCTCATACTTCGATCTGTTTCTCCACAAAAGATTCATCGGTTTGCAGAAAGATGA 562
||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 367 TGCAATCTCATACTTGGATCTGTTTCTCCAGAGAAGATTCATCGGTTTGCAGAGAGATGA 426
Query 563 AACATGGGCGATGCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCTAAAATGGAGGA 622
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 427 AACATGGGCGATTCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCGAAAATGGAGGA 486
Query 623 ACGTATTGTTCCTGGTTTATCACAATACCCTCAAGATCATGACTTCGTTTTCAAACCCGA 682
||| ||||||||||| |||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 487 ACGAATTGTTCCTGGATTATCACAATACCCTCAAGATCATGATTTTGTTTTCAAATCCGA 546
Query 683 TGTCATTCGTAAAACTGAACTGTTGATTCTATCCACATTGGACTGGAAGATGAACTTGAT 742
||| ||||||||||||||| || || ||||||| |||||||| ||||| |||||||| ||
Sbjct 547 TGTGATTCGTAAAACTGAATTGCTGGTTCTATCGACATTGGATTGGAAAATGAACTTAAT 606
Query 743 CACTCCTTTTCATTACTTCAACTACTTCCTTGCTAAAATCTCTCAGGACAACCATTCTGT 802
|||||||||||||||||| ||||||||| ||||||||| ||||| | ||||||||||
Sbjct 607 CACTCCTTTTCATTACTTGAACTACTTCGTTGCTAAAACCTCTC---CCGACCATTCTGT 663
Query 803 TTCTAAAGACTTGGTGTTGTTAAGATCCTCTGATTCTCTTCTTGCTTTAACTAAAGAGAT 862
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 664 TTCTAAAGAGTTGGTTTTGTTAAGATCCTCTGATTCTCTTCTTGCTCTAACTAAAGAGAT 723
Query 863 AAGTTTTACGGAGTATCGACAGTTTGTTGTTGCTGCTGTTACTACATTGCTAGCTTCTTC 922
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 724 AAGTTTTACGGATTATCGACAGTTCGTTGTTGCTGCTGTTACTACAATGTTAG---CTTC 780
Query 923 TTCTACCTCATCGGATATTAGATTGACTAGAGAAGAGATAGCTAACAAGTTTGGTTCGAT 982
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 781 TTCTACTTCATCGGATATTAGATTGACGAGAGAAGAGATAGCGAACAAGTTTGGATCGAT 840
Query 983 CTCTTGGTGGACTTCTAATGAGAATGAAAATGTATATTTGTGTTATCAGAGAACGCTAGA 1042
||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 841 TTCTTGGTGGACGTCTAATGAAAATGATAATGTATATTTGTGTTATCAGAGAATGCTAGA 900
Query 1043 GATTGAGGAGAGGAAACATATGACACCTCCACCGGAAATAGCGGTTTCTCGCGAACCGCC 1102
||||||||||||||||||||||||||| || ||||||||||||||| | |||||||| ||
Sbjct 901 GATTGAGGAGAGGAAACATATGACACCGCCGCCGGAAATAGCGGTTCCCCGCGAACCACC 960
Query 1103 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATTCTGATCAAAGTTCTCC 1162
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 961 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATCCTGATCAAACTTCTCC 1020
Query 1163 ACCAGCCAAGAGAATGCGTAGGCTATGAAGAGAGAGTTTCTTTCTTCTTCAAGTTTTGGC 1222
||||||||||||| ||||||||| || | |||||||| |||||||||| ||||||||||
Sbjct 1021 TCCAGCCAAGAGAACGCGTAGGCTCTG-A-AGAGAGTTACTTTCTTCTTGAAGTTTTGGC 1078
Query 1223 TTATATTGATTTGGTTTCTTTTTTGGCAACATATTGATTTGG-TTTTATATTCAATCATT 1281
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1079 TTATATTGATTTGGTTTCTTTTTTGGCAACATATTGATTTGGTTTTTATATTCAATCATT 1138
Query 1282 TGATTATAGAG-AAAAAATGGTCTGAATAC-ATCGGTTATTTCAATTTTTATGAAGTAAC 1339
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1139 TGATTATAGAGAAAAAAATGGTCTGAATACAAT-GGTTATTTCAATTTTTATGAAGTAAC 1197
Query 1340 TCATATAGGTTCTTCGTATGAAGGTCTTTGGA-TTT-C--TTGGGGATGAAATGTGACTA 1395
||||||||||||||| |||||||||||||||| ||| | |||||| ||||||||||||
Sbjct 1198 TCATATAGGTTCTTCTTATGAAGGTCTTTGGATTTTACTTTTGGGG-TGAAATGTGACT- 1255
Query 1396 TT-AAAACATTAGGGGCTTCTCTGAGAGAATCT-AGGAAATATGAGGAGTGAATGTAAAT 1453
|| |||||||||||||||| | ||||||||| | | |||||| |||||||||||||||||
Sbjct 1256 TTCAAAACATTAGGGGCTTTTTTGAGAGAAT-TAATGAAATAAGAGGAGTGAATGTAAAT 1314
Query 1454 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1374
Query 1514 GGTTTCACATCCTCttttatttttt 1538
|||||||||||||||||||||||||
Sbjct 1375 GGTTTCACATCCTCTTTTATTTTTT 1399
Score = 67.6 bits (36), Expect = 3e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 106 TTTATAATTCCCCTTTTGATGTGTACGGACACACCACCGAAGCAGA 151
||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 20 TTTATAATT-CCC-TTTGATGTGTACGGACACACCACCGAAGAAGA 63
> Ahg932898 jgi|Araly1|932898|scaffold_400886.1
Length=385
Score = 351 bits (190), Expect = 7e-96
Identities = 263/297 (89%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 712 TATCCACATTGGACTGGAAGATGAACTTGATCACTCCTTTTCATTACTTCAACTACTTCC 771
|||| |||||||| ||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 1 TATCAACATTGGATTGGAAAATGAACTTAATCACTCCTTTTCATTACTTGAAGTACTTCC 60
Query 772 TTGCTAAAATCTCTCAGGACAACCATTCTGTTTCTAAAGACTTGGTGTTGTTAAGATCCT 831
|||||| |||||||| | ||||||||||||||||||| ||||| |||||||| ||||
Sbjct 61 TTGCTACAATCTCTC---CCGACCATTCTGTTTCTAAAGAGTTGGTTTTGTTAAGTTCCT 117
Query 832 CTGATTCTCTTCTTGCTTTAACTAAAGAGATAAGTTTTACGGAGTATCGACAGTTTGTTG 891
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 118 CTGATTCTCTTCTTGCTCTAACTAAAGAGATAAGTTTTACGGATTATCGACAGTTCGTTG 177
Query 892 TTGCTGCTGTTACTACATTGCTAGCTTCTTCTTCTACCTCATCGGATATTAGATTGACTA 951
|||||| |||||||| | || ||||| ||||| || |||||||||||||||||||| |
Sbjct 178 TTGCTGTTGTTACTATAATGTTAGCTACTTCTACT---TCATCGGATATTAGATTGACGA 234
Query 952 GAGAAGAGATAGCTAACAAGTTTGGTTCGATCTCTTGGTGGACTTCTAATGAGAATG 1008
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 GAGAAGAGATACCGAACAAGTTT----CGATCTCTTGGTGGACTTCTAATGAGAATG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60106406610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5