BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37650.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944085 jgi|Araly1|944085|scaffold_700314.1 2697 0.0
> Ahg944085 jgi|Araly1|944085|scaffold_700314.1
Length=1636
Score = 2697 bits (1460), Expect = 0.0
Identities = 1567/1620 (97%), Gaps = 1/1620 (0%)
Strand=Plus/Plus
Query 75 aaaaaaaaaaaaTGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 134
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AAACAAAAAAAATGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 69
Query 135 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACTTCCACCACCACTACTGGCTCTC 194
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 70 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACCTCCACCACCACTACTGGCTCTC 129
Query 195 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 189
Query 255 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 249
Query 315 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCCGCCACAT 374
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 250 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCTACCACGT 309
Query 375 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCTTACTCCTCCTCCG 434
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 310 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCGTACTCCTCCTCTG 369
Query 435 GCCACCATAATGACCCTTCCGCGTTCTCCATACCTCAAACTCCTCCGTCCTTCGACTTCT 494
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 370 GCCACCACAATGACCCTTCCGCTTTCTCCATCCCTCAAACTCCTCCGTCCTTCGACTTCT 429
Query 495 CAGCCAATGCCAAGTGGGCAGACTCGGTCCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 554
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 CAGCCAATGCCAAGTGGGCAGACTCGGTTCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 489
Query 555 AAGACACTGCACGTGCGCAACAAATCCTATGGACGCTCAACGAGCTCTCTTCTCCGTACG 614
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 490 AAGACACCGCACGTGCGCAACAAATCCTATGGACGCTTAACGAGCTCTCTTCTCCGTACG 549
Query 615 GAGACACCGAGCAAAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 674
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GAGACACCGAGCAGAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 609
Query 675 GTTCAGGCGAACGATGCTACCGAACCATGGTAACAGCTGCAGCCACAGAGAAGACTTGCT 734
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 610 GTTCAGGTGAACGATGCTACAGAACCATGGTAACAGCTGCAGCCACAGAGAAGACATGCT 669
Query 735 CCTTCGAGTCAACGCGAAAAACTGTACTAAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 794
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 670 CTTTCGAGTCAACGCGCAAAACTGTACTCAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 729
Query 795 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 789
Query 855 ACATCGTTGACATAAGCTCCACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 914
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATATCGTTGACATAAGCTCAACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 849
Query 915 CCACAAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTTGTCGTGGCCAACAAGT 974
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 850 CCACGAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTAGTCGTGGCCAACAAGT 909
Query 975 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 969
Query 1035 AATTCGCTAGGCTTATGGGAGTTCCTTTCAAATTTAACATTATTCATCACGTTGGAGATT 1094
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 970 AATTCGCTAGGCTTATGGGAGTTCCTTTTAAATTCAACATTATTCATCACGTTGGAGATT 1029
Query 1095 TATCTGAGTTTGATCTCAACGAACTCGACGTTAAACCAGACGAAGTCTTGGCCATTAACT 1154
| |||||||||||||||||||| || || ||||||||||||||||||||||||| ||||
Sbjct 1030 TGTCTGAGTTTGATCTCAACGAGCTAGATATTAAACCAGACGAAGTCTTGGCCATCAACT 1089
Query 1155 GCGTAGGCGCGATGCATGGGATCGCTTCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1214
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1090 GCGTAGGCGCGATGCATGGGATCGCTCCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1149
Query 1215 GTTTCCGACGGTTAAGACCGAGGATTGTGACGGTCGTAGAAGAAGAAGCTGATCTTGTCG 1274
||||| || ||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 1150 GTTTCAGAAGGTTAAGACCGAGGATTGTGACGATTGTAGAAGAAGAAGCGGATCTTGTCG 1209
Query 1275 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGGTTTGGAGAATGTTTACGAT 1334
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGCTTTGGAGAATGTTTACGAT 1269
Query 1335 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCAAGGACGAGCAACGAGAGGT 1394
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1270 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCGAGGACAAGCAACGAGAGGT 1329
Query 1395 TGATGCTAGAGCGTGCAGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1454
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGATGCTAGAGCGTGCTGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1389
Query 1455 ATTCCACGGAGAGGCGAGAGACAGCGAGGAAGTGGTCGAGGAGGATGAGGAATAGTGGGT 1514
|||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1390 ATTCGACGGAGAGGAGAGAGACGGCGAGGAAGTGGTCGAGGAGGATGAGGAACGGTGGGT 1449
Query 1515 TTGGAGCGGTGGGGTATAGTGATGAGGTGGCGGATGATGTCAGAGCTTTGTTGAGGAGAT 1574
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1450 TTGGAGCGGTCGGGTATAGTGATGAGGTGGCGGATGACGTCAGAGCTTTATTGCGGAGAT 1509
Query 1575 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1569
Query 1635 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGG-TTGttttt 1693
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1570 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGGATTTTTTTT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5