BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37660.1

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944084 jgi|Araly1|944084|scaffold_700313.1                        828    0.0  
  Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2          126    2e-28


> Ahg944084 jgi|Araly1|944084|scaffold_700313.1
Length=545

 Score =  828 bits (448),  Expect = 0.0
 Identities = 502/528 (95%), Gaps = 3/528 (1%)
 Strand=Plus/Plus

Query  29   CCTCCATTCACCGGCG-AAAATGCGAGCTCCGATCTCCGGAATTT-TCTCGAGATCTCTC  86
            |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||
Sbjct  1    CCTCCATTCACCGGCGAAAAATGCGAGCTCCGATCTCCGG-ATTTCTCTCGAGATCCCTC  59

Query  87   GGTTACCTCCACCGTACGACGCCGCTATCCTCCGCTACTCGTCACCTATGCGCCGTCGCT  146
            || |||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct  60   GGATACCTCCACCGTACGACGCCTCTAACCGCCGCTACTCGCCACCTATGCGCCGTCGCT  119

Query  147  TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT  179

Query  207  CGGATTGAGCTTTACGATTACTCACTCCTCTTCAGCCATAAAATAGGTCTCAATCGCTAC  266
            |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct  180  CGGATTGAGCTTTACGATTACTCAATCCTCTTCAGCCATAAACTCGGTCTCAATCGCTAC  239

Query  267  GGTTCCGCCGTAGCTGTTACCGGATCTGTCGGCGACGCGTCAGCTTCTACGGAGACGAAA  326
            |||||||||||||||||| ||||||||| |||||| || |||| |||||||||||| |||
Sbjct  240  GGTTCCGCCGTAGCTGTTGCCGGATCTGACGGCGAGGCATCAGGTTCTACGGAGACCAAA  299

Query  327  ACGGCGGAGAAGACTACTTTCGATGTGAAGCTTGAGAAATTCGAAGCGGCTTCGAAGATT  386
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  300  ACGGCGGAGAAGACTGCTTTCGATGTGAAGCTTGAGAAATTCGAAACGGCTTCGAAGATC  359

Query  387  AAAGTGATAAAAGAGATCAGAGCATTCACGGATCTGGGATTGAAAGAAGCTAAGGCTTTG  446
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||
Sbjct  360  AAAGTGATAAAAGAGATCAGAGCGTTCACGGATCTGGGATTGAAAGAAGCTAAGGAATTG  419

Query  447  GTTGAGAAAGCCCCAGTGATTGTGAAGAATGGTCTTACTAAAGAAGAAGCTGAGAAGATC  506
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  420  GTTGAGAAAGCTCCAGTGATTGTGAAGAAAGGTCTTACTAAAGAAGAAGCTGAGAAGATC  479

Query  507  ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC  527


> Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2
Length=1924

 Score =  126 bits (68),  Expect = 2e-28
 Identities = 76/80 (95%), Gaps = 0/80 (0%)
 Strand=Plus/Minus

Query  564   GATCAAAATAAGTATTTTGAATTTTTCGAAATCAAACAATGTTGAAAGCTTTTGAGAATT  623
             |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| 
Sbjct  1924  GATCAAAATAAGTATTTTGAATTTTTCGAAATCAAACAATCTTGAAAGTTTTTGAGAATG  1865

Query  624   ATGAATATTGATTTTACAAT  643
             |||||||||| |||||||||
Sbjct  1864  ATGAATATTGTTTTTACAAT  1845



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28592187750


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5