BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37670.2
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2 2861 0.0
Ahg481154 jgi|Araly1|481154|fgenesh2_kg.4__214__AT2G22910.1 1581 0.0
> Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2
Length=1924
Score = 2861 bits (1549), Expect = 0.0
Identities = 1754/1854 (95%), Gaps = 10/1854 (1%)
Strand=Plus/Plus
Query 8 ATGGAGCGAGGAGCTTTAGTGGGTTCTTCTTCTACTTCTAGCTACTATGTTCCTTACCAC 67
||||||| ||||||||| |||||| |||| | | |||| |||| ||||||||||| |||
Sbjct 1 ATGGAGCAAGGAGCTTTGGTGGGTACTTC-T-T-CTTCAAGCTGCTATGTTCCTTTCCAA 57
Query 68 TTTCGCCAATCAAAGTCGAATTTTT-CGTCATTCAAACCAAAAAATAAGCTAAACCCTAC 126
||||||||||||||| || ||||| ||||||||||||| |||| ||||||||||||||
Sbjct 58 TTTCGCCAATCAAAGACG-TTTTTTCCGTCATTCAAACCGAAAACTAAGCTAAACCCTAT 116
Query 127 TCAATTCCGGTTTAACTGTTCATGGTTTAAGCCGGTTAGTTCTATAACGGCGGCGAAATG 186
||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 117 TCAATTCCGGTTTAACTGTCCATGGTTTAAGCTGGTTAGTTCTGTAACGGCGGCGAAATG 176
Query 187 CAATATGTTTGACTACGCGGTGACTGCAGCCGGCGATGTGGAGGCTGAGCATCCAGTTGA 246
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||
Sbjct 177 CAATATGTTTGACTACGCGGTGAGTGCAGACGGCGATGTGGAGGCTGAGCATCCGGTAGA 236
Query 247 CGACAAACAGTTTGTGCGTTGGTTCCGTGAAGCATGGCCTTATCTTTGGGCTCACCGTGG 306
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 237 CGACAAACAGTTTGTGCGTTGGTTTCGTGAAGCCTGGCCTTATCTGTGGGCTCACCGTGG 296
Query 307 CTGCACATTCGTCGTTATTATCTCCGGCGAGATCATCGCCGGCTCTTCTTGTGATGCCAT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 CTGCACATTCGTCGTTATTATCTCCGGCGAGATCATCGCCGGCTCTTCTTGTGATCCCAT 356
Query 367 TTTGAAGGACATAGCGTTTCTTCATCATCTAGGAATAAGGTTTGTTTTAGTTCCTGGAAC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTTGAAGGACATAGCGTTTCTTCATCATCTAGGAATAAGGTTTGTTTTAGTTCCTGGAAC 416
Query 427 TCAGGAGCAAATCGACCAGCTTCTGGCTGAGAGAGGACGCGAGGCTACGTATGTGGGACG 486
||| || ||||||||| |||||||| ||||||||||||||||||| || |||||||| ||
Sbjct 417 TCAAGATCAAATCGACGAGCTTCTGTCTGAGAGAGGACGCGAGGCCACATATGTGGGTCG 476
Query 487 TTACAGAGTAACGGATGCAGCATCTTTGCAGGCTGCTAAAGAAGCTGCAGGAGCAATATC 546
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TTACAGAGTAACGGATGCAGCATCTTTGCAGGCTGCCAAAGAAGCTGCAGGAGCAATATC 536
Query 547 AGTGATGCTTGAGGCCAAATTATCTCCTGGACCTTCTATTTGCAATATCCGTAGACATGG 606
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 537 AGTGATGCTTGAGGCCAAACTATCTCCTGGACCTTCCATTTGCAATATCCGTAGACACGG 596
Query 607 TGATCGTAGTCGTTTACATGATATAGGTGTTAGGGTTGATACCGGTAACTTCTTTGCAGC 666
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 TGATCGTAGTCGTTTACATGATATAGGTGTTAGGGTTGATACTGGTAACTTCTTTGCAGC 656
Query 667 AAAAAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCGACTGGTGAGGTAAAGAAGAT 726
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 657 AAAAAGAAGAGGTGTTGTTGACGGTGTTGATTTTGGAGCGACAGGTGAGGTAAAGAAGAT 716
Query 727 AGATGTAGATCGGATTTGTGAGAGGCTTGACGGTGGTTCTGTAGTTTTGTTGAGGAACTT 786
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 AGATGTAGATCGGATTTGTGAGAGGCTTGACGGTGGTTCTATAGTTTTGTTGAGGAACTT 776
Query 787 GGGCCACTCGAGCTCCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCTACAGCTTG 846
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGGCCACTCTAGCTCCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCTACAGCTTG 836
Query 847 TGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGACGGCCCAATTCTTGATGA 906
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 837 TGCTTTAGCTATAGGAGCAGATAAGCTAATTTGCATAATGGACGGTCCAATTCTTGATGA 896
Query 907 GAGTGGACATCTTATTCATTTCTTGACACTTCAAGAAGCAGATATGTTAGTTCGAAAACG 966
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 897 GAGTGGACATCTTATTCGTTTCTTGACACTTCAAGAAGCAGATATGTTAGTTAGAAAACG 956
Query 967 GGCACAACAAAGCGACATAGCTGCAAATTACGTAAAAGCCGTTGGAGATGGAAGCATGGC 1026
|| ||||| || |||||||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 957 TGCTCAACAGAGTGACATAGCTGCAAATTACGTGAAGGCCGTTGGAGATGGAAGTATGAC 1016
Query 1027 TTATCCCGAACCTCCTAACAACACCAATGGTAATATTACTTCTGCTCAAAACGGGAGAGC 1086
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 1017 TTATCCCGAACCTCCTAACAACACCAGCAGTAACATTACTTCTCCTCAAAACGGGAGAGC 1076
Query 1087 CGTTTCATTTTGGGGAAACGGAAACCACACTCCGATCTTTCAGAACGGTGTTGGATTTGA 1146
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1077 AG---CATTTTGGGGAAACGGAAACCACACTCCGGTCTTTCAGAACGGTGTTGGATTTGA 1133
Query 1147 CAACGGAAACGGATTGTGGCCTTGTGAGCAAGGTTTTGCTATTGGTGGTGAAGAAAGATT 1206
||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 1134 CAACGGAAACGGATTGTGGTCTGGTGAGCAAGGTTTTGCTATTGGTGGTGAGGAAAGATT 1193
Query 1207 AAGCCGCTTAAACGGTTATCTTTCTGAATTGGCTGCTGCGGCGTTCGTCTGCAGAGGTGG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AAGCCGCTTAAACGGTTATCTTTCTGAATTGGCTGCTGCGGCGTTCGTCTGCAGAGGTGG 1253
Query 1267 AGTCAAAAGAGTTCACTTGTTGGATGGTACTATAAGTGGAGTTCTATTGTTGGAGCTTTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1254 AGTCAAAAGAGTTCACTTGTTGGATGGTACTATAAGTGGAGTTCTATTGCTGGAGCTTTT 1313
Query 1327 CAAAAGAGATGGAATGGGAACTATGGTTGCTAGTGATGTTTACGAAGGAACCCGTGATGC 1386
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1314 CAAAAGAGATGGAATGGGAACTATGGTTGCTAGTGATGTTTACGAAGGAACCCGGGATGC 1373
Query 1387 CAGAGTGGAAGATCTAGCAGGAATTAGACATATAATCAAACCCTTGGAGGAATCAGGGAT 1446
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CAGAGTGGAAGATCTTGAAGGAATTAGACATATAATCAAACCCTTGGAGGAATCAGGGAT 1433
Query 1447 TTTAGTTCGCAGAACTGATGAGGAGTTACTGCGAGCTTTGGATTCATTTGTGGTTGTGGA 1506
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1434 TCTAGTTCGCAGAACTGATGAGGAGTTACTGCGAGCCTTGGATTCATTTGTGGTTGTGGA 1493
Query 1507 AAGGGAAGGACAGATCATCGCTTGTGCGGCTTTGTTTCCGTTCTT-CAAAGACAAATGCG 1565
||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1494 AAGGGAAGGTCAGATCATCGCTTGTGCGGCTTTGTTTCCGTTCTTTCAA-GACAAATGCG 1552
Query 1566 GAGAAGTTGCTGCAATCGCGGTTGCATCAGATTGTCGCGGTCAAGGCCAAGGCGATAAAT 1625
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1553 GAGAAGTTGCAGCAATCGCGGTTGCATCAGATTGTCGCGGTCAAGGCCAAGGAGATAAAT 1612
Query 1626 TGCTCGATTACATAGAGAAGAAAGCTTCATCTCTCGGGTTAGAGAAGCTGTTCCTACTCA 1685
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1613 TGCTCGATTACATAGAGAAGAAAGCTTCGTCTCTCGGGTTAGAAAAGCTGTTCCTACTCA 1672
Query 1686 CAACGCGAACAGCGGATTGGTTTGTGAGACGAGGGTTCCAAGAATGCTCAATAGAGATCA 1745
|||| |||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 1673 CAACCCGAACAGCAGACTGGTTCGTGAGACGCGGGTTCCAAGAATGTTCAATCGAGATCA 1732
Query 1746 TACCAGAGAGTAGAAGACAAAGAATCAATCTTTCAAGAAATTCAAAGTATTACATGAAGA 1805
||||||||||||||||||| ||||||||||| || ||||| ||||||||||||| |||||
Sbjct 1733 TACCAGAGAGTAGAAGACAGAGAATCAATCTATCTAGAAAATCAAAGTATTACACGAAGA 1792
Query 1806 AGCTAATCCCTGATAGAAGTGGCATTTCAGTTATGAGAATCTAAGCAAGAAGAT 1859
| || | |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1793 AACTTCTACCTGATAGAAGTGGCATTTCAGTTCTGAGAATATAAGCAAGAAGAT 1846
Score = 126 bits (68), Expect = 5e-28
Identities = 76/80 (95%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1890 ATTGTAAAATCAATATTCATAATTCTCAAAAGCTTTCAACATTGTTTGATTTCGAAAAAT 1949
||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct 1845 ATTGTAAAAACAATATTCATCATTCTCAAAAACTTTCAAGATTGTTTGATTTCGAAAAAT 1904
Query 1950 TCAAAATACTTATTTTGATC 1969
||||||||||||||||||||
Sbjct 1905 TCAAAATACTTATTTTGATC 1924
> Ahg481154 jgi|Araly1|481154|fgenesh2_kg.4__214__AT2G22910.1
Length=2013
Score = 1581 bits (856), Expect = 0.0
Identities = 1349/1583 (85%), Gaps = 50/1583 (3%)
Strand=Plus/Plus
Query 247 CGACAAACAGTTTGTGCGTTGGTTCCGTGAAGCATGGCCTTATCTTTGGGCTCACCGTGG 306
||| || ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||| |
Sbjct 298 CGATAAGCAGTTTGTGCGGTGGTTTCGTGAAGCTTGGCCTTATCTGTGGGCTCATCGTAG 357
Query 307 CTGCACATTCGTCGTTATTATCTCCGGCGA-GATCATCGCCGGCTCTTCTTGTGATGC-C 364
||| || |||||||||| |||||||||||| | || | | |||| ||| ||||||| | |
Sbjct 358 CTGTACCTTCGTCGTTACTATCTCCGGCGATG-TCTTAGACGGCCCTTATTGTGAT-CTC 415
Query 365 ATTTTGAAGGACATAGCGTTTCTTCATCATCTAGG-AATAAGGTTTGTTTTAGTTCCTGG 423
|||| ||||||||||| |||||||||||||| || | ||| ||||||| ||||||||||
Sbjct 416 GTTTTAAAGGACATAGCATTTCTTCATCATCTGGGCATTAA-GTTTGTTCTAGTTCCTGG 474
Query 424 AACTCAGGAGCAAATCGACCAGCTTCTGGCTGAGAGAGGACGCGAGGCTACGTATGTGGG 483
|||||| | |||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 475 AACTCAAGTGCAAATCGACCAGCTTCTAGCTGAGAGAGGACGCGAGCCTACATATGTGGG 534
Query 484 ACGTTACAGAGTAACGGA-TGCAGCATCTTTGCAGGCTGCTAAAGAAGCTGCAGGAGCAA 542
||||||||||| || || | |||||||| |||||||||| || |||||||| |||||||
Sbjct 535 TCGTTACAGAGTCACAGACT-CAGCATCTCTGCAGGCTGCCAAGGAAGCTGCGGGAGCAA 593
Query 543 TATCAGTGATGCTTGAGGCCAAATTATCTCCTGGACCTTCTATTTGCAATATCCGTAGAC 602
|||| || ||| |||| |||||| ||||||| |||||||| |||| |||||| || |||
Sbjct 594 TATCTGTAATGATTGAAGCCAAACTATCTCCCGGACCTTCCATTTACAATATACGCCGAC 653
Query 603 ATGGTGATCGTAGTCGTTTACATGATATAGGTGTTAGGGTTGATACCGGTAACTTCTTTG 662
|||||||| |||||||||| ||||| | |||||||||||| ||||| || ||||||||||
Sbjct 654 ATGGTGATAGTAGTCGTTTGCATGAAACAGGTGTTAGGGTGGATACTGGCAACTTCTTTG 713
Query 663 CAGCAAAAAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCGACTGG-TGAGGTAAAG 721
||||||| ||||||||||||||||||||||||||||||||||| ||||| | | || |||
Sbjct 714 CAGCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTTA-GTGAAG 772
Query 722 AAGATAGATGTAGATCGGATTTGTGAGAGGCTTGACGGTGGTTCTGTAGTTTTGTTGAGG 781
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 773 AAGATAGATGTAGATCGGATCCGTGAGAGGCTTGATAGTGGTTCTGTAGTTTTATTGAGG 832
Query 782 AACTTGGGCCACTCGAGCTCCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCTACA 841
||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 833 AACTTGGGCCATTCCAGCTCCGGCGAAGTCTTAAATTGCAATACCTATGAGGTTGCGACA 892
Query 842 GCTTGTGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGACGGCCCAATTCTT 901
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 893 GCATGTGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGATGGTCCAATTCTT 952
Query 902 GATGAGAGTGGACATCTTATTCATTTCTTGACACTTCAAGAAGCAGATATGTTAGTTC-G 960
||||||| |||||||||| ||| |||||||| ||||| |||||||||| |||||| | |
Sbjct 953 GATGAGAATGGACATCTTGTTCGGTTCTTGACTCTTCAGGAAGCAGATACGTTAGT-CAG 1011
Query 961 AAAACGGGCACAACAAAGCGACATAGCTGCAAATTACGTAAAAGCCGTTGGAGATGGAAG 1020
|||||||||||| |||||||| |||||||| |||||||| || || ||||| |||||| |
Sbjct 1012 AAAACGGGCACAGCAAAGCGAGATAGCTGCCAATTACGTGAAGGCTGTTGGGGATGGAGG 1071
Query 1021 CAT--G--GCTTATCCCGAACCTCCTAACAACACCAATGGTAATATT-ACTTCTGCTCAA 1075
||| | | || ||| ||||||| | ||| | ||| | | | || || | |||
Sbjct 1072 CATAAGTAGTTT-TCCTGAACCTCTTGGTTACA--A-TGGGA-TGGTGACGACTCC-CAA 1125
Query 1076 -AA-C-----GGGAGAGCCGTTTCATTTTGGGGAAACGGAAACCACACTCCGATCTTTCA 1128
|| | |||||| ||| |||| ||| ||| || | ||||||||| ||||||
Sbjct 1126 CAATCATATTGGGAGA-CCG----ATTT-GGG-AAA---AA-C-ACACTCCGACCTTTCA 1173
Query 1129 GAACGGTGTTGGATTTGACAACGGAAACGGATTGTGGCCTTGTGAGCAAGGTTTTGCTAT 1188
||| ||||||||||||||||||||||| || |||||| || | |||||||||||||||||
Sbjct 1174 GAATGGTGTTGGATTTGACAACGGAAATGGGTTGTGGTCTGGGGAGCAAGGTTTTGCTAT 1233
Query 1189 TGGTGGTGAAGAAAGA-TTAAGCCGCTTAAACGGTTATCTTTCTGAATTGGCTGCTGCGG 1247
||| ||||| || ||| ||| |||| || || || ||||| |||||| ||||||| || |
Sbjct 1234 TGGCGGTGAGGAGAGAATTA-GCCGTTTGAATGGATATCTCTCTGAACTGGCTGCAGCAG 1292
Query 1248 CGTTCGTCTGCAGAGGTGGAGTCAAAAGAGTTCACTTGTTGGATGGTACTATAAGTGGAG 1307
||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1293 CGTTCGTTTGCAGAGGTGGTGTCAATAGAGTTCACTTATTGGATGGTACTATAAGTGGAG 1352
Query 1308 TTCTATTGTTGGAGCTTTTCAAAAGAGATGGAATGGGAACTATGGTTGCTAGTGATGTTT 1367
| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct 1353 TGCTATTGTTGGAGCTTTTCAAAAGAGATGGAATGGGGACTATGGTGGCAAGTGATGTAT 1412
Query 1368 ACGAAGGAACCCGTGATGCCAGAGTGGAAGATCTAGCAGGAATTAGACATATAATCAAAC 1427
| ||||||||||| || || | |||||||||||| || ||||| ||||| ||||||||||
Sbjct 1413 ATGAAGGAACCCGGGAGGCGAAAGTGGAAGATCTTGCTGGAATAAGACAAATAATCAAAC 1472
Query 1428 CCTTGGAGGAATCAGGGATTTTAGTTCGCAGAACTGATGAGGAGTTACTGCGAGCTTTGG 1487
|||| || ||||| ||| ||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1473 CCTTAGAAGAATCTGGGGCTTTAGTTCGTAGAACTGATGAGGAGCTACTGCGAGCTTTGG 1532
Query 1488 ATTCATTTGTGGTTGTGGAAAGGGAAGGACAGATCATCGCTTGTGCGGCTTTGTTTCCGT 1547
|||| ||||||||||||||| | ||||||||||| |||||||||||||||||||| || |
Sbjct 1533 ATTCGTTTGTGGTTGTGGAACGAGAAGGACAGATTATCGCTTGTGCGGCTTTGTTCCCTT 1592
Query 1548 TCTTCAAAGACAAATGCGGAGAAGTTGCTGCAATCGCGGTTGCATCAGATTGTCGCGGTC 1607
|||| |||||||||| ||||||||||| || ||||| |||||||||||||| || || |
Sbjct 1593 TCTTTGAAGACAAATGTGGAGAAGTTGCAGCTATCGCAGTTGCATCAGATTGCCGTGGAC 1652
Query 1608 AAGGCCAAGGCGATAAATTGCTCGATTACATAGAGAAGAAAGCTTCATCTCTCGGGTTAG 1667
||||||| || |||||||||||||||||||| ||||||||||| ||| |||| || | |
Sbjct 1653 AAGGCCAGGGAGATAAATTGCTCGATTACATTGAGAAGAAAGCGTCAGCTCTTGGACTCG 1712
Query 1668 AGAAGCTGTTCCTACTCACAACGCGAACAGCGGATTGGTTTGTGAGACGAGGGTTCCAAG 1727
||| ||| || || || |||||| |||| || || |||||||||||||| ||||| || |
Sbjct 1713 AGATGCTTTTTCTGCTGACAACGAGAACCGCAGACTGGTTTGTGAGACGTGGGTTTCAGG 1772
Query 1728 AATGCTC-AATAGAGATCATACCAGAGAGTA-GAAGACAAAGAATCAATCTTTCAAGAA- 1784
|||| || ||| ||||| ||||||||| | | || | |||||||||||||||| || |
Sbjct 1773 AATG-TCCAATCGAGATGATACCAGAG-GCAAGACGGGAAAGAATCAATCTTTCGAGGAG 1830
Query 1785 ATTCAAAGTATTACATGAAGAAG 1807
|| | ||||||||||||||||||
Sbjct 1831 AT-CGAAGTATTACATGAAGAAG 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5