BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37690.1 Length=1954 Score E Sequences producing significant alignments: (Bits) Value Ahg944075 jgi|Araly1|944075|scaffold_700304.1 2065 0.0 Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1 867 0.0 > Ahg944075 jgi|Araly1|944075|scaffold_700304.1 Length=1352 Score = 2065 bits (1118), Expect = 0.0 Identities = 1278/1354 (94%), Gaps = 16/1354 (1%) Strand=Plus/Plus Query 390 TCTCAGTCTCATCATCTCCGATGGGAAAACCCGGCGGCGCAAAGACCAGAACCGCCGTAT 449 ||||| || ||||||||||||||||||| ||||||||||||||||| |||| | |||| Sbjct 1 TCTCAATCCCATCATCTCCGATGGGAAAGTACGGCGGCGCAAAGACCAAAACCACTGTAT 60 Query 450 GTTTATCAGACGGTGTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACTCTCGTCTGGT 509 |||||||||| |||| | ||||||| |||||||||||||||||||| ||||||||||||| Sbjct 61 GTTTATCAGATGGTGCTATCTTTCTTGCCGGAGCTTTCATGTCTCTTACTCTCGTCTGGT 120 Query 510 CTTACTTCTCAATCTTTTCA-C--C-TT--CTTTCA-C--CA---GTTTACGTCACGACG 557 |||||||||||||||||||| | | || |||||| | || |||||||||||| || Sbjct 121 CTTACTTCTCAATCTTTTCACCTTCTTTCACTTTCACCTTCACCGGTTTACGTCACGGCG 180 Query 558 GCAAACCGGTTCAATGCTCCGGTTTAGACATGCAATTCGACCCATC-CGAGCCCGGTTTT 616 || ||||||||||||||||||||||| |||||||||| |||||| | || ||||||||| Sbjct 181 GCGAACCGGTTCAATGCTCCGGTTTAAACATGCAATTGGACCCA-CGTGAACCCGGTTTT 239 Query 617 TACGACGACCCGGATCTAAGCTACTCGATCGAGAAACCAATCACAAAATGGGACGAGAAA 676 |||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 240 TACGACGATCCGGAGCTAAGCTACTCGATCGAGAAATCAATCACAAACTGGGACGAGAAA 299 Query 677 CGAAACCAATGGTTTGAATCACACCCATCTTTCAAACCCGGTTCAGAAAACCGGATCGTA 736 || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || Sbjct 300 CGGCACCAATGGTTTAAATCACACCCATCATTCAAACCCGGTTCAGAAAACCGGATCTTA 359 Query 737 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTACTC 796 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 360 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTGTTACTC 419 Query 797 CGATGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGTCACGACATCTTCTACAGC 856 || |||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 420 CGGTGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGCCATGAAATCTTCTACAGC 479 Query 857 AATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAAGCG 916 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 480 AATGCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAAGCG 539 Query 917 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 599 Query 977 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACACAACCTCGTCGTTCAC 1036 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 600 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACATAACCTCGTCGTTCAC 659 Query 1037 GGTTGGCCAAATATAATCTACGAGAAACAGAGCTGGACGGCGTTAAACGCCGGCGTTTTC 1096 ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct 660 GGTTGGCCAAATATAATCTACGATAAACCGAGTTGGACGGCGTTAAACGCCGGCGTTTTT 719 Query 1097 TTAATAAGAAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 1156 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTAATCAGGAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 779 Query 1157 GTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAAAGATAAGTTG 1216 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 780 GTGAGTCCAGAGTACAAAAAGTGGGGTCCGATCCAACGGTCGATATTCAAAGATAAGTTG 839 Query 1217 TTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 1276 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 840 TTTCCAGAGTCAGATGATCAGACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 899 Query 1277 TATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 1336 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 900 TATTATCCTAAGATATACCTCGAAGGAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 959 Query 1337 TTTGG-GGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAACGAGAAGACGACAC 1395 ||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 960 GTTGATGG-TTTCGCTAACGTGACGGAGCGGTATCTTGAGATGGAACGAGAAGACGACAC 1018 Query 1396 GTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCGTTTAGAGAAGAGCG 1455 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1019 GTTGCGTAGACGTCACGCGGAGAAAGTGAGCGAGCGATACGGTGCGTTTAGAGAAGAGCG 1078 Query 1456 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGTCGCAGACGCGCGTTTATAACGCATTT 1515 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1079 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGTAGTCGCAGACGCGCGTTTATAACGCATTT 1138 Query 1516 TACGGGATGTCAACCATGTAGCGGTGATCATAATCCGAGTTACGATGGTGACACGTGTTG 1575 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1139 TACGGGATGTCAACCATGTAGCGGTGATCACAATCCGAGTTACGATGGTGACACGTGTTG 1198 Query 1576 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTTA 1635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1199 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTCA 1258 Query 1636 CGTTCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1695 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CGTGCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1318 Query 1696 TGAAGCTTGGTGATTAATTTCTTAATAAGTACTT 1729 ||| ||| |||||||| ||||||||||||||||| Sbjct 1319 TGAGGCTCGGTGATTATTTTCTTAATAAGTACTT 1352 > Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1 Length=1464 Score = 867 bits (469), Expect = 0.0 Identities = 1073/1354 (79%), Gaps = 84/1354 (6%) Strand=Plus/Plus Query 400 ATCATCTCCGATGGGAAAACCCGGCGGCGCAAAG-ACCAGAACC-GCCGTATGTTTATCA 457 |||||||||||||| |||| || ||| || ||| || || ||| | | ||||||| || Sbjct 16 ATCATCTCCGATGGCAAAATACGCCGGAGC-AAGAACAAG-ACCGGTCATATGTTTCTCC 73 Query 458 GACGGT-GTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACT-CTCGTCTGGTC-TTAC 514 ||| || ||| |||| |||| |||||||||||||||| | | | ||||||||||| || | Sbjct 74 GAC-GTCGTTCTCTTCCTCGGCGGAGCTTTCATGTCT-TTAATCCTCGTCTGGTCATT-C 130 Query 515 TTCTCAATCTTTTCACCTTCTTTCACC-AGT-TTA-CGTCACGA-CGGC-AA-AC-CGGT 567 |||| ||| |||| |||||||| | | | | ||||| | | | || | | | Sbjct 131 CTCTCCTTCTCTTCA----CTTTCACCAAATCTCACCGTCAAAACCAACGAATCCTCCG- 185 Query 568 TC-AATG--CTCC-GGTTTAGACATGCAA-TTCGACCCATCCGAGCCCGGTTT-TTACGA 621 | |||| |||| | | |||||| || | ||| ||| |||| |||||||| ||||| Sbjct 186 CCAAATGTTCTCCAGAAATCGACATG-AAGTACGATCCAACCGA-CCCGGTTTACTACGA 243 Query 622 CGACCCGGATCTAAGCTACT-CGATCGAGAAACCAATCACAAAA-TGGGACGAGAAACGA 679 ||| |||||||||| ||| | | ||||| ||||| | | |||| ||||||||||||||| Sbjct 244 CGAGCCGGATCTAACCTA-TACAATCGAAAAACCGGTTA-AAAACTGGGACGAGAAACGA 301 Query 680 A-ACCAATGGTTTGAATC-ACACCCATC-TTTCAAAC-CCGGTTCAGAAAACCGGATC-G 734 | | | ||| || |||| |||||| || ||| | | |||| | || || || | | | Sbjct 302 AGA-CGTTGG-TTAAATCTACACCCTTCGTTT--ATCACCGGAGCTGAGAATCGTA-CGG 356 Query 735 TAATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTAC 794 | ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| || Sbjct 357 TTATGGTAACCGGATCACAATCGGCGCCGTGTAAAAACCCAATCGGAGATCATTTGTTGT 416 Query 795 TCCGATGCTTCAAAAACAAAGTCGATTA-CGCTCGAATCCATGGTCACGACATCTTCTAC 853 | |||| || || |||||||| ||||| | ||| || |||||||| || || ||||| Sbjct 417 TACGATTTTTTAAGAACAAAGTTGATTATTG-TCGGATGCATGGTCATGATATATTCTAT 475 Query 854 AGCAATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAA 913 || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 476 AGTAACGCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGCGGTTAAA 535 Query 914 GCGGCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATC 973 ||||||||| ||||||| || |||||||||||||| |||||||||||||| || ||| | Sbjct 536 GCGGCGATGATTGCTCATCCTGAGGCGGAGTGGATCTGGTGGGTTGATTCTGATGCTTTG 595 Query 974 TTCACCGACATGGAATTTAAACCGCCGCTT-CACCG-T-TACCGTCAACACAACCTCGTC 1030 || || || ||||| |||| |||||| | || || | || | | || || || || Sbjct 596 TTTACGGATATGGATTTTACGCCGCCG-TGGCATCGGTATAAGG--AGCATAATCTTGTT 652 Query 1031 GTTCACGGTTGGCCAA-ATATAATCTACGA-GAAACAGAGCTGGACGGCGTTAAACGCCG 1088 ||||| |||||||| | | || ||| | || | ||| ||||||||||| ||||||| Sbjct 653 GTTCATGGTTGGCCGGGAG-TGATTTACAATGAT-CGGAGTTGGACGGCGTTGAACGCCG 710 Query 1089 GCGTTTTCTTAATAAGAAATTGTCAATGGTCAATGGA-CTTAATTGACACGTGGA-AGAG 1146 |||||||| | || || |||||||| ||||| ||||| || | |||||||||||| || | Sbjct 711 GCGTTTTCCTCATTAGGAATTGTCAGTGGTCTATGGAGCTCA-TTGACACGTGGACAG-G 768 Query 1147 TATGGGACCAGTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAA 1206 ||||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||| Sbjct 769 TATGGGACCAGTGAGTCCAGAGTACGCTAAATGGGGACAAATCCAACGGTCAATATTCAA 828 Query 1207 AGATAAGTTGTTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACA 1266 ||| || | || ||||||||||| |||||||||||||||||||| || || || ||||| Sbjct 829 AGACAAACTCTTCCCAGAGTCAGACGATCAAACGGCTCTGATTTACTTACTCTACAAACA 888 Query 1267 TAAAGA-GTTGTATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATT 1325 | ||| || |||||||| || ||||||||||||| | | | |||| || |||| |||| Sbjct 889 CAGAGAAGTC-TATTATCCCAAAATATACCTCGAAGGAAACTTTTATTTCGAAGGATATT 947 Query 1326 GGATT-G-G-T-GTATTTGGGGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAA 1381 || || | | | ||| ||| ||| ||||||| |||||||||||||| ||||||||| Sbjct 948 GG-TTAGAGATCGTACC-GGG--TTTAACCAACGTAACGGAACGGTATCTAGAGATGGAA 1003 Query 1382 CGAGAAGACGACACGTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCG 1441 |||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 1004 CGAGAAGACGCCACGTTGCGTAGACGTCACGCAGAGAAAGTGAGTGAACGATACGGTGCG 1063 Query 1442 TTTAGAGAAGAGCGGTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGT---CGCAGACGC 1498 ||| | || || |||||||| ||||| || || |||| ||||||| || |||| | Sbjct 1064 TTTCGTGAGGAACGGTTTTTAAAAGGAGAAAGAGGCGGGAAAGGAAGTAAACGGAGAC-C 1122 Query 1499 GCGTTTATAACGCATTTTACGGGATGTCAACCATGTAGCGGTGATCATAATCC-GA-GTT 1556 | || | ||||||||||||||||||||||| ||||| ||||||||||| | || || Sbjct 1123 G--TTCGTGACGCATTTTACGGGATGTCAACCTTGTAGTGGTGATCATAA-CAAGATGT- 1178 Query 1557 ACGATGGTGACACGTGTTGGAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGG 1616 |||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| | Sbjct 1179 ACGATGGTGACACGTGTTGGAATGGGATGATCAAAGCCATTAATTTCGCTGATAATCAAG 1238 Query 1617 TGATGCGCGTGTATGGTTACGTTCATTCTGATTT-GAGTAAGACTTCTCCGCTTCAACCT 1675 ||||||| |||||||| ||| || || ||| | | | |||||||| || ||||||||| Sbjct 1239 TGATGCGTAAGTATGGTTTCGTACACTCGGATCTAGGG-AAGACTTCCCCTCTTCAACCT 1297 Query 1676 CTGCCGTTCGATTATCCTAATGAAGC-TTGGTGA 1708 || ||||||||||||||| |||| || ||||||| Sbjct 1298 CTACCGTTCGATTATCCTGATGA-GCCTTGGTGA 1330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73437992360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5