BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37690.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944075 jgi|Araly1|944075|scaffold_700304.1 2065 0.0
Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1 867 0.0
> Ahg944075 jgi|Araly1|944075|scaffold_700304.1
Length=1352
Score = 2065 bits (1118), Expect = 0.0
Identities = 1278/1354 (94%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 390 TCTCAGTCTCATCATCTCCGATGGGAAAACCCGGCGGCGCAAAGACCAGAACCGCCGTAT 449
||||| || ||||||||||||||||||| ||||||||||||||||| |||| | ||||
Sbjct 1 TCTCAATCCCATCATCTCCGATGGGAAAGTACGGCGGCGCAAAGACCAAAACCACTGTAT 60
Query 450 GTTTATCAGACGGTGTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACTCTCGTCTGGT 509
|||||||||| |||| | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 61 GTTTATCAGATGGTGCTATCTTTCTTGCCGGAGCTTTCATGTCTCTTACTCTCGTCTGGT 120
Query 510 CTTACTTCTCAATCTTTTCA-C--C-TT--CTTTCA-C--CA---GTTTACGTCACGACG 557
|||||||||||||||||||| | | || |||||| | || |||||||||||| ||
Sbjct 121 CTTACTTCTCAATCTTTTCACCTTCTTTCACTTTCACCTTCACCGGTTTACGTCACGGCG 180
Query 558 GCAAACCGGTTCAATGCTCCGGTTTAGACATGCAATTCGACCCATC-CGAGCCCGGTTTT 616
|| ||||||||||||||||||||||| |||||||||| |||||| | || |||||||||
Sbjct 181 GCGAACCGGTTCAATGCTCCGGTTTAAACATGCAATTGGACCCA-CGTGAACCCGGTTTT 239
Query 617 TACGACGACCCGGATCTAAGCTACTCGATCGAGAAACCAATCACAAAATGGGACGAGAAA 676
|||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 240 TACGACGATCCGGAGCTAAGCTACTCGATCGAGAAATCAATCACAAACTGGGACGAGAAA 299
Query 677 CGAAACCAATGGTTTGAATCACACCCATCTTTCAAACCCGGTTCAGAAAACCGGATCGTA 736
|| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 300 CGGCACCAATGGTTTAAATCACACCCATCATTCAAACCCGGTTCAGAAAACCGGATCTTA 359
Query 737 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTACTC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTGTTACTC 419
Query 797 CGATGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGTCACGACATCTTCTACAGC 856
|| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 420 CGGTGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGCCATGAAATCTTCTACAGC 479
Query 857 AATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAAGCG 916
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 AATGCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAAGCG 539
Query 917 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 599
Query 977 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACACAACCTCGTCGTTCAC 1036
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACATAACCTCGTCGTTCAC 659
Query 1037 GGTTGGCCAAATATAATCTACGAGAAACAGAGCTGGACGGCGTTAAACGCCGGCGTTTTC 1096
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 660 GGTTGGCCAAATATAATCTACGATAAACCGAGTTGGACGGCGTTAAACGCCGGCGTTTTT 719
Query 1097 TTAATAAGAAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 1156
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTAATCAGGAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 779
Query 1157 GTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAAAGATAAGTTG 1216
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 780 GTGAGTCCAGAGTACAAAAAGTGGGGTCCGATCCAACGGTCGATATTCAAAGATAAGTTG 839
Query 1217 TTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 1276
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTCCAGAGTCAGATGATCAGACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 899
Query 1277 TATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 1336
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 TATTATCCTAAGATATACCTCGAAGGAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 959
Query 1337 TTTGG-GGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAACGAGAAGACGACAC 1395
||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 GTTGATGG-TTTCGCTAACGTGACGGAGCGGTATCTTGAGATGGAACGAGAAGACGACAC 1018
Query 1396 GTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCGTTTAGAGAAGAGCG 1455
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 GTTGCGTAGACGTCACGCGGAGAAAGTGAGCGAGCGATACGGTGCGTTTAGAGAAGAGCG 1078
Query 1456 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGTCGCAGACGCGCGTTTATAACGCATTT 1515
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGTAGTCGCAGACGCGCGTTTATAACGCATTT 1138
Query 1516 TACGGGATGTCAACCATGTAGCGGTGATCATAATCCGAGTTACGATGGTGACACGTGTTG 1575
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 TACGGGATGTCAACCATGTAGCGGTGATCACAATCCGAGTTACGATGGTGACACGTGTTG 1198
Query 1576 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTTA 1635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTCA 1258
Query 1636 CGTTCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1695
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGTGCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1318
Query 1696 TGAAGCTTGGTGATTAATTTCTTAATAAGTACTT 1729
||| ||| |||||||| |||||||||||||||||
Sbjct 1319 TGAGGCTCGGTGATTATTTTCTTAATAAGTACTT 1352
> Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1
Length=1464
Score = 867 bits (469), Expect = 0.0
Identities = 1073/1354 (79%), Gaps = 84/1354 (6%)
Strand=Plus/Plus
Query 400 ATCATCTCCGATGGGAAAACCCGGCGGCGCAAAG-ACCAGAACC-GCCGTATGTTTATCA 457
|||||||||||||| |||| || ||| || ||| || || ||| | | ||||||| ||
Sbjct 16 ATCATCTCCGATGGCAAAATACGCCGGAGC-AAGAACAAG-ACCGGTCATATGTTTCTCC 73
Query 458 GACGGT-GTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACT-CTCGTCTGGTC-TTAC 514
||| || ||| |||| |||| |||||||||||||||| | | | ||||||||||| || |
Sbjct 74 GAC-GTCGTTCTCTTCCTCGGCGGAGCTTTCATGTCT-TTAATCCTCGTCTGGTCATT-C 130
Query 515 TTCTCAATCTTTTCACCTTCTTTCACC-AGT-TTA-CGTCACGA-CGGC-AA-AC-CGGT 567
|||| ||| |||| |||||||| | | | | ||||| | | | || | | |
Sbjct 131 CTCTCCTTCTCTTCA----CTTTCACCAAATCTCACCGTCAAAACCAACGAATCCTCCG- 185
Query 568 TC-AATG--CTCC-GGTTTAGACATGCAA-TTCGACCCATCCGAGCCCGGTTT-TTACGA 621
| |||| |||| | | |||||| || | ||| ||| |||| |||||||| |||||
Sbjct 186 CCAAATGTTCTCCAGAAATCGACATG-AAGTACGATCCAACCGA-CCCGGTTTACTACGA 243
Query 622 CGACCCGGATCTAAGCTACT-CGATCGAGAAACCAATCACAAAA-TGGGACGAGAAACGA 679
||| |||||||||| ||| | | ||||| ||||| | | |||| |||||||||||||||
Sbjct 244 CGAGCCGGATCTAACCTA-TACAATCGAAAAACCGGTTA-AAAACTGGGACGAGAAACGA 301
Query 680 A-ACCAATGGTTTGAATC-ACACCCATC-TTTCAAAC-CCGGTTCAGAAAACCGGATC-G 734
| | | ||| || |||| |||||| || ||| | | |||| | || || || | | |
Sbjct 302 AGA-CGTTGG-TTAAATCTACACCCTTCGTTT--ATCACCGGAGCTGAGAATCGTA-CGG 356
Query 735 TAATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTAC 794
| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 357 TTATGGTAACCGGATCACAATCGGCGCCGTGTAAAAACCCAATCGGAGATCATTTGTTGT 416
Query 795 TCCGATGCTTCAAAAACAAAGTCGATTA-CGCTCGAATCCATGGTCACGACATCTTCTAC 853
| |||| || || |||||||| ||||| | ||| || |||||||| || || |||||
Sbjct 417 TACGATTTTTTAAGAACAAAGTTGATTATTG-TCGGATGCATGGTCATGATATATTCTAT 475
Query 854 AGCAATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAA 913
|| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 476 AGTAACGCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGCGGTTAAA 535
Query 914 GCGGCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATC 973
||||||||| ||||||| || |||||||||||||| |||||||||||||| || ||| |
Sbjct 536 GCGGCGATGATTGCTCATCCTGAGGCGGAGTGGATCTGGTGGGTTGATTCTGATGCTTTG 595
Query 974 TTCACCGACATGGAATTTAAACCGCCGCTT-CACCG-T-TACCGTCAACACAACCTCGTC 1030
|| || || ||||| |||| |||||| | || || | || | | || || || ||
Sbjct 596 TTTACGGATATGGATTTTACGCCGCCG-TGGCATCGGTATAAGG--AGCATAATCTTGTT 652
Query 1031 GTTCACGGTTGGCCAA-ATATAATCTACGA-GAAACAGAGCTGGACGGCGTTAAACGCCG 1088
||||| |||||||| | | || ||| | || | ||| ||||||||||| |||||||
Sbjct 653 GTTCATGGTTGGCCGGGAG-TGATTTACAATGAT-CGGAGTTGGACGGCGTTGAACGCCG 710
Query 1089 GCGTTTTCTTAATAAGAAATTGTCAATGGTCAATGGA-CTTAATTGACACGTGGA-AGAG 1146
|||||||| | || || |||||||| ||||| ||||| || | |||||||||||| || |
Sbjct 711 GCGTTTTCCTCATTAGGAATTGTCAGTGGTCTATGGAGCTCA-TTGACACGTGGACAG-G 768
Query 1147 TATGGGACCAGTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAA 1206
||||||||||||||||||||| ||| |||||||| | ||||||||||| ||||||||
Sbjct 769 TATGGGACCAGTGAGTCCAGAGTACGCTAAATGGGGACAAATCCAACGGTCAATATTCAA 828
Query 1207 AGATAAGTTGTTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACA 1266
||| || | || ||||||||||| |||||||||||||||||||| || || || |||||
Sbjct 829 AGACAAACTCTTCCCAGAGTCAGACGATCAAACGGCTCTGATTTACTTACTCTACAAACA 888
Query 1267 TAAAGA-GTTGTATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATT 1325
| ||| || |||||||| || ||||||||||||| | | | |||| || |||| ||||
Sbjct 889 CAGAGAAGTC-TATTATCCCAAAATATACCTCGAAGGAAACTTTTATTTCGAAGGATATT 947
Query 1326 GGATT-G-G-T-GTATTTGGGGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAA 1381
|| || | | | ||| ||| ||| ||||||| |||||||||||||| |||||||||
Sbjct 948 GG-TTAGAGATCGTACC-GGG--TTTAACCAACGTAACGGAACGGTATCTAGAGATGGAA 1003
Query 1382 CGAGAAGACGACACGTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCG 1441
|||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1004 CGAGAAGACGCCACGTTGCGTAGACGTCACGCAGAGAAAGTGAGTGAACGATACGGTGCG 1063
Query 1442 TTTAGAGAAGAGCGGTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGT---CGCAGACGC 1498
||| | || || |||||||| ||||| || || |||| ||||||| || |||| |
Sbjct 1064 TTTCGTGAGGAACGGTTTTTAAAAGGAGAAAGAGGCGGGAAAGGAAGTAAACGGAGAC-C 1122
Query 1499 GCGTTTATAACGCATTTTACGGGATGTCAACCATGTAGCGGTGATCATAATCC-GA-GTT 1556
| || | ||||||||||||||||||||||| ||||| ||||||||||| | || ||
Sbjct 1123 G--TTCGTGACGCATTTTACGGGATGTCAACCTTGTAGTGGTGATCATAA-CAAGATGT- 1178
Query 1557 ACGATGGTGACACGTGTTGGAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGG 1616
|||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| |
Sbjct 1179 ACGATGGTGACACGTGTTGGAATGGGATGATCAAAGCCATTAATTTCGCTGATAATCAAG 1238
Query 1617 TGATGCGCGTGTATGGTTACGTTCATTCTGATTT-GAGTAAGACTTCTCCGCTTCAACCT 1675
||||||| |||||||| ||| || || ||| | | | |||||||| || |||||||||
Sbjct 1239 TGATGCGTAAGTATGGTTTCGTACACTCGGATCTAGGG-AAGACTTCCCCTCTTCAACCT 1297
Query 1676 CTGCCGTTCGATTATCCTAATGAAGC-TTGGTGA 1708
|| ||||||||||||||| |||| || |||||||
Sbjct 1298 CTACCGTTCGATTATCCTGATGA-GCCTTGGTGA 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5