BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37700.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944074 jgi|Araly1|944074|scaffold_700303.1                        592    1e-168


> Ahg944074 jgi|Araly1|944074|scaffold_700303.1
Length=589

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 433/488 (89%), Gaps = 5/488 (1%)
 Strand=Plus/Plus

Query  30   ACA-AAGATAAGATGAGCAAGAAAAAGGAGACGAAGCTAAGCAAATACATAAAAGTTCCG  88
            ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  104  ACACAAGATAAGATGAGCAAGAAAAAGGAGACGAAGCTAAGCAAGTACATAAAAGTTCCC  163

Query  89   ATAAAGATGCTGGTGAAAGCTAGAGACATGTACATACGAAGCATGAATCAATTTTCTTCC  148
            |||||||||||||| |||||||||||| ||||||||| ||||||||||||||  ||||||
Sbjct  164  ATAAAGATGCTGGTCAAAGCTAGAGACTTGTACATACAAAGCATGAATCAATGGTCTTCC  223

Query  149  CATGACCTTCCTGGAAGCGGCATGAGTTTTGGGATACCCGTCTGCAACGTAAGCACTCTT  208
            |||||||||  ||| ||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct  224  CATGACCTTATTGGCAGCGGCATGGGTTTAGGGGTACCGGTCTGCAACGTAAGCACTCTT  283

Query  209  CCGCGAAGTTTCAGTGCTAGCCACTCCCAATATTCCGTGAGAGCTGAAGATGATCGTGTG  268
            ||||||||||| || ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct  284  CCGCGAAGTTTTAGCGCTAGCCACGCCCAATATTCCATGAGACCTGAAGATGATCGTGTG  343

Query  269  GCTAAACTTGTAAGAGCCGCATCAGCTAGAAATGCGACCATTGATGGTGCACGACATGAA  328
             || | ||||| |||||||||||||||||||||  || ||||| || ||| ||||||| |
Sbjct  344  CCTGAGCTTGTGAGAGCCGCATCAGCTAGAAATATGATCATTGGTGATGCGCGACATGGA  403

Query  329  CCATCAAAATTGCGGAAGGCTAAGAGTTCGAGAAGTTGTGGTGGTCATCGTGGCTTTGAG  388
            ||||| ||||||||||| ||||||||||||||||| |||||||||| || ||| ||||||
Sbjct  404  CCATCGAAATTGCGGAAAGCTAAGAGTTCGAGAAGCTGTGGTGGTCTTCATGGGTTTGAG  463

Query  389  AAAATAGATGAGGCAAGTCCTTTGATTAGCTTTGGGAGTAAGCACAAGATGTTTCAAAGG  448
            ||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
Sbjct  464  AAAATTGATGAGACAAGTCCTTTGATTAGTTTTGGGAGTAAGCACAAGATGCTTCAAAAG  523

Query  449  AGTAAGAGTTACAGTGTTGTCAAATA--CTTAGGCTCTTaaaaaaaaTTGTTTTGTTTAT  506
            |||||||||||| |||||| ||||||  ||||  | ||  || ||  |||||||||||||
Sbjct  524  AGTAAGAGTTACGGTGTTGCCAAATATACTTATTCGCTCCAATAA--TTGTTTTGTTTAT  581

Query  507  GTGTTACG  514
            ||| ||||
Sbjct  582  GTGCTACG  589



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5