BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37710.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490844 jgi|Araly1|490844|fgenesh2_kg.7__277__AT4G37710.1          597    3e-170


> Ahg490844 jgi|Araly1|490844|fgenesh2_kg.7__277__AT4G37710.1
Length=536

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 410/450 (91%), Gaps = 14/450 (3%)
 Strand=Plus/Plus

Query  41   ATCAATAAATATCAGAAGAACATAACTTTCACATTC-AAAGAATTTTAAGCGACATCTCA  99
            ||||||| |||||||||| ||||||| |||||| || | |||||||||||||| ||||| 
Sbjct  1    ATCAATATATATCAGAAG-ACATAAC-TTCACA-TCTACAGAATTTTAAGCGATATCTCT  57

Query  100  AGTCTCAATGGAAGCAACATCACAACAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA  159
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  58   AGTCTCAATGGAAGCAACATCACAGCAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA  117

Query  160  AACCACCACAAGGGCAACGAAAAATTACCTAACTTCGCTCCATTCGACACGTAAACAACC  219
            |||| | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  118  AACCGCGACAAGGACAACGAAAAATTACCTAACATCGCTCCATTCGACCCGTAAACAACC  177

Query  220  TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCA-C--C---TTTGAATCCAATGCATCC  273
            |||||||||||||||||||||||||||||||||| |  |   ||||||||||||||| ||
Sbjct  178  TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCATCATCCCCTTTGAATCCAATGCACCC  237

Query  274  TCATGTCTACCGAGTCGAGCCAGTAAACTTCAAAGTGTTGGTTCAGAGGCTAACCGGTGC  333
             ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  238  CCATGTGTACCGAGTCGAGCCAGTAAACTTCAAAGAGTTGGTTCAGAGGCTAACCGGTGC  297

Query  334  ACCTGAGCACGAGACT-GTGCAGGCTAAACCGCTCAAGACTTCGGATGATGCAGCAAAGC  392
            |||||||||  || || ||||||||| |||||||||||| || |||||||||||||||||
Sbjct  298  ACCTGAGCATAAG-CTTGTGCAGGCTGAACCGCTCAAGAGTTTGGATGATGCAGCAAAGC  356

Query  393  AGAGTTCTTCGTCATTTGCGTTTGATCCA-TCATCATCTTGGGGAGATTTCTCATTCCAA  451
            |||||||||| |||| ||||||||||| | || || |||||||||||||||||||| |||
Sbjct  357  AGAGTTCTTCATCATCTGCGTTTGATC-AGTCGTCTTCTTGGGGAGATTTCTCATTTCAA  415

Query  452  AATCCTGCAAATATTTCCAGATGGTAGCTT  481
            |||||| ||||| |||||||||||||||||
Sbjct  416  AATCCTCCAAATCTTTCCAGATGGTAGCTT  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5