BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37710.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg490844 jgi|Araly1|490844|fgenesh2_kg.7__277__AT4G37710.1 597 3e-170 > Ahg490844 jgi|Araly1|490844|fgenesh2_kg.7__277__AT4G37710.1 Length=536 Score = 597 bits (323), Expect = 3e-170 Identities = 410/450 (91%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 41 ATCAATAAATATCAGAAGAACATAACTTTCACATTC-AAAGAATTTTAAGCGACATCTCA 99 ||||||| |||||||||| ||||||| |||||| || | |||||||||||||| ||||| Sbjct 1 ATCAATATATATCAGAAG-ACATAAC-TTCACA-TCTACAGAATTTTAAGCGATATCTCT 57 Query 100 AGTCTCAATGGAAGCAACATCACAACAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA 159 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 58 AGTCTCAATGGAAGCAACATCACAGCAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA 117 Query 160 AACCACCACAAGGGCAACGAAAAATTACCTAACTTCGCTCCATTCGACACGTAAACAACC 219 |||| | |||||| ||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 118 AACCGCGACAAGGACAACGAAAAATTACCTAACATCGCTCCATTCGACCCGTAAACAACC 177 Query 220 TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCA-C--C---TTTGAATCCAATGCATCC 273 |||||||||||||||||||||||||||||||||| | | ||||||||||||||| || Sbjct 178 TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCATCATCCCCTTTGAATCCAATGCACCC 237 Query 274 TCATGTCTACCGAGTCGAGCCAGTAAACTTCAAAGTGTTGGTTCAGAGGCTAACCGGTGC 333 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 238 CCATGTGTACCGAGTCGAGCCAGTAAACTTCAAAGAGTTGGTTCAGAGGCTAACCGGTGC 297 Query 334 ACCTGAGCACGAGACT-GTGCAGGCTAAACCGCTCAAGACTTCGGATGATGCAGCAAAGC 392 ||||||||| || || ||||||||| |||||||||||| || ||||||||||||||||| Sbjct 298 ACCTGAGCATAAG-CTTGTGCAGGCTGAACCGCTCAAGAGTTTGGATGATGCAGCAAAGC 356 Query 393 AGAGTTCTTCGTCATTTGCGTTTGATCCA-TCATCATCTTGGGGAGATTTCTCATTCCAA 451 |||||||||| |||| ||||||||||| | || || |||||||||||||||||||| ||| Sbjct 357 AGAGTTCTTCATCATCTGCGTTTGATC-AGTCGTCTTCTTGGGGAGATTTCTCATTTCAA 415 Query 452 AATCCTGCAAATATTTCCAGATGGTAGCTT 481 |||||| ||||| ||||||||||||||||| Sbjct 416 AATCCTCCAAATCTTTCCAGATGGTAGCTT 445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5