BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37720.1 Length=264 Score E Sequences producing significant alignments: (Bits) Value Ahg328000 jgi|Araly1|328000|fgenesh1_pm.C_scaffold_7000227 403 3e-112 > Ahg328000 jgi|Araly1|328000|fgenesh1_pm.C_scaffold_7000227 Length=264 Score = 403 bits (218), Expect = 3e-112 Identities = 249/264 (94%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 1 ATGGCAAATCTCTCTACTTTGA-TCACGATAGCTCTCCTCCTTTGCGCCACCATGCTAAC 59 |||||||||||||| | ||| | |||||| |||||||||||||||| || |||||||||| Sbjct 1 ATGGCAAATCTCTCCAGTTT-ACTCACGACAGCTCTCCTCCTTTGCACCGCCATGCTAAC 59 Query 60 GTGCAGCGCCCGCCCTGAACCTGCCTACTTCGCCTCCTTCACAACCTCTCCGGCGGATAC 119 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GTGCACCGCCCGCCCGGAACCTGCCTACTTCGCCTCCTTCACAACCTCTCCGGCGGATAC 119 Query 120 ACTTAGTCTGGAAATGATAGAATCAAAATTACATGAGGTGGCGGGAGAGAGCTGCGATAA 179 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 120 ACTTAGTCTGGAAATGATAGAATCAAAACTACATGACGTGGCGGGAGAGAGCTGCGATAA 179 Query 180 AGAAGACGACGAAGATTGCTTGGTGAGAAGAACATTGACGGCTCATCTTGATTATATCTA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AGAAGACGACGAAGATTGCTTGGTGAGAAGAACATTGACGGCTCATCTTGATTATATCTA 239 Query 240 CACACATAAGAATAATCATCATTA 263 ||||| ||||||| ||| ||||| Sbjct 240 TACACAGAAGAATAGTCACCATTA 263 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9203370901 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5