BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37730.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888284 jgi|Araly1|888284|Al_scaffold_0007_270 1349 0.0
> Ahg888284 jgi|Araly1|888284|Al_scaffold_0007_270
Length=909
Score = 1349 bits (730), Expect = 0.0
Identities = 847/904 (94%), Gaps = 5/904 (1%)
Strand=Plus/Plus
Query 146 GCTGTTTATACAGTATAGTCTACGGTCTTACATCGTATTTTGGAAATATGACCAAATTAC 205
||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| |||
Sbjct 5 GCTGTTTATACAGTATAATTTACGGTCGTACATCGTATTTTACAAATATGACCAAACTAC 64
Query 206 CCCT-TGGTTTGTCC-ATAAATATCAAGCTCCAACAATGCAATTCTTCCCTTTTCCCCTT 263
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CCCTCTGGTTTG-CCAATAAATATCAAGCTCCAACAATGCAATTCTTCCCTTTTCCCCTT 123
Query 264 CTAATTTCTCTCATCTCTCTATTAGAAAAATTATTAGCAATTATGTTGTCCACTGCACCG 323
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 124 CTAATTTCTCTCATCTCTCTATTAGAAAAAATATTAGCAATTATGTTGTCCACTGTACCG 183
Query 324 GCCTTTTCATTCTCCGAACCGGGTTTGGTTAATCAATTCTCGGGTTTCCAAACCGGGTTC 383
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCATTCTCATTCTCCGAACCGGGTTTGGTTAATCAATTCTCGGGTTTCCAAACCGGGTTC 243
Query 384 ACTCCTTGGGAATGGGATTGCTCTGATCTCTTTTTCGTGGACCAAATGTCTCTTGAACCG 443
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 244 ACTCCTTGGGAATGGGACTGCTCTGATCTCTTTTCCGTGGACCAAATGTTTCTTGAACCG 303
Query 444 GCCATCCCTAGTCCTTGTTATGGTGAATCCGACACTGGTTCCGTCAAAATTAATTCCGGT 503
||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 GCCGTCCCGAGTCCTTGTGATGGTGAATCCGACACTGGTTCTGTCAAAATTAATTCCGGT 363
Query 504 TCTCATGACATGAAAACCGGTTCTGACGAATCTTGTGCCGGTTTCGTCAAAATTAATCCT 563
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 364 TCTCATGACATGAAAACCGGTTCTGACGTTTCTTGTGCCGGTTTCGTCAAAACTAATTC- 422
Query 564 CG-TTGTGACGACGCCGACATATCAAACGATCTACCGTGCTCTCAAGCAGATGAACCGGA 622
|| || ||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 423 CGGTTTTGATGACGCCGACAGATCAAACGGTCTACCGTGCTCTCAAGCAGACGAACCGGA 482
Query 623 CTCGGACGACACAAAACAATTGACAGCCATCACAAATTTCGGTTCGGGAGAGAATAACCA 682
|||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 483 CTCGGAAGACTCAAAACAATTGACAGCCATCTCAAATTTCGGTTCGGGAGAGCATAACCG 542
Query 683 TAACCGGaaaaaaaTGATCCAACCGGAGATGACCGACGAGCGGAAGAGGAAGAGGATGGA 742
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 543 TAACCGGAAAAAATTGATCCAATCGGAGATGACCGACGAGCGGAAGAGGAAGAGGATGGA 602
Query 743 GTCAAACCGGGAATCAGCGAAACGGTCAAGAATGCGTAAACAAAGTCACATTGATAACTT 802
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 603 ATCAAACCGGGAATCAGCGAAACGGTCGAGAATGCGTAAACAAAGTCACATAGATAACTT 662
Query 803 ACGAGAGCAAGTAAACCGGTTGGATTTAGAAAACCGTGAGCTCGGGAACCGACTCCGGTT 862
||| || |||||||||||| |||||||||||||||| |||||||||||||| |||| |||
Sbjct 663 ACGGGATCAAGTAAACCGGCTGGATTTAGAAAACCGCGAGCTCGGGAACCGGCTCCAGTT 722
Query 863 AGTTTTACACCAGCTTCAACGAGTGAATTCCGACAATAACCGGCTCGTGACAGAACAAGA 922
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 723 AGTTTTGTACCAGCTTCAACGAGTGAATTCCGACAATAACAGGCTCGTGACAGAACAAGA 782
Query 923 GATACTCCGGCTAAGATTGTCGGAGATGCGTCGGATTCTGATCATTAGACAACTTCAACA 982
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 783 GATTCTTCGGCTAAGATTGTCGGAGATGCGTCGGATTCTGATCATAAGACAGCTTCAACA 842
Query 983 ACAGCAACAATGGGAACTACATAACCGGAGAATGATCATGACTGAACAAAACCACCCTCA 1042
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 843 ACAGCAACAATGGGAATTACATAACCGGAGAATGATCATGACCGAACAAAACCACCCCCA 902
Query 1043 TCTT 1046
||||
Sbjct 903 TCTT 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5