BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37740.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888283 jgi|Araly1|888283|Al_scaffold_0007_269 2435 0.0
> Ahg888283 jgi|Araly1|888283|Al_scaffold_0007_269
Length=1623
Score = 2435 bits (1318), Expect = 0.0
Identities = 1529/1628 (94%), Gaps = 25/1628 (2%)
Strand=Plus/Plus
Query 122 ATGGATATTGGTGTTCATGTTCTTGGGTCGGTTACTAGTAATGAAAATGAGTCACTTGGT 181
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGATATTGGTGTTCATGTTCTTGGGTCGGTTACTAGTAATGGAAATGAGTCACTTGGT 60
Query 182 CTAAAAGAGCTTATAGGAACTAAACAAGATAGATCCGGATTCATCGGTGAGGATTGCTTG 241
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CTAAAAGAGCTTAGAGGAACTAAACAAGATAGATCCGGATTCAACGGTGAGGATTGCTTG 120
Query 242 CAACGAAGCTTGAAGCTAGCAAGAACGACAACTA-GAGCGGAAGAAGAAGAAAACTTGTC 300
|||||||||||||||||||||||||| ||||| | | || |||||||||||||||||
Sbjct 121 CAACGAAGCTTGAAGCTAGCAAGAACAACAACAACTA-AAGAGGAAGAAGAAAACTTGTC 179
Query 301 TTCTTCTGT-TGCAGCTGCTTATTGCAAAACGATGTCGTTTCACCAAGGCATTCCTCTCA 359
||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 180 TTCTTCT-TCTGCAGCTGCTTATTGCAAAACGATGTCGTTTCAGCAAGGCATTCCTCTTA 238
Query 360 TGAGATCTGCTTCTCCTCTTTCCTCTGATTCTCGCCGTCAAGAACAAATGCTTAGCTTCT 419
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 239 TGAGATCTGCTTCTCCTCTTTCCTCTGATTCTCGCCGGCAAGAACAAATGCTTAGCTTTT 298
Query 420 CAGATAAACCAGACGCTCTTGATTTCAGTAAATATGTCGGTTTGGATAATAGCAGTAATA 479
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 CAGATAAACCAGAAGCTCTTGATTTTAGTAAATATGTCGGTTTGGATAATAGCAGTAATA 358
Query 480 ACAAGAACTCTCTCTCGCCGTTTCTTCACCAGATTCCTCCACCTTCTTACTTTAGAAGCT 539
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACAAGAGCTCTCCCTCGCCGTTTCTTCACCAGATTCCTCCACCTTCTTACTTTAGAAGCT 418
Query 540 CAGGAGGATATGGTTCTGGTGGAATGATGATGAACATGAGCATGCAAGGGAACTTCACAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 CAGGAGGATATGGTTCTGGTGGAATGATGATGAACATGAGCATGCAAGGGAACTTCACTG 478
Query 600 GTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGTTAGAGCAACAGGCGTTGATCT 659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 GTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGCTAGAGCAACAGGCGTTGATCT 538
Query 660 ATAAGTACATCACAGCCAATGTCCCTGTTCCTTCTAGTTTGCTCATCTCTATCAAGAAGT 719
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 ATAAGTATATCACAGCCAATGTCCCTGTTCCTTCAAGTTTGCTCATCTCTATCAAGAAGT 598
Query 720 CTTTTTATCCTTACGGATCTTTGCCTCCTAGTTCCTTCGGATGGGGAACTTTCCATCTCG 779
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 CTTTTTACCCTTATGGATCTTTGCCTCCTAGTTCTTTCGGATGGGGAACTTTCCATCTCG 658
Query 780 GTTTCGCAGGCGGTAACATGGACCCTGAGCCAGGGAGATGCCGCAGAACAGATGGGAAGA 839
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 659 GTTTTGCAGGCGGTAACATGGATCCTGAGCCAGGGAGATGCCGTAGAACAGATGGGAAGA 718
Query 840 AATGGCGGTGCTCAAGAGACGCCGTTCCTGATCAGAAATACTGTGAAAGACACATCAACA 899
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 719 AATGGCGGTGCTCAAGAGACGCTGTTCCTGATCAGAAATATTGTGAAAGACACATCAACA 778
Query 900 GAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAATCTGGCCAAAACCAAACCGCCG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAATCTGGCCAAAACCAAACCGCCG 838
Query 960 CTGCTGCATCCAAAGCGGTTACTA-CACCACAACAGCCTGTTG-TCGCTGGTAATACTAA 1017
|||||||||||||||||||| || |||| ||||||||||| | || |||||||||||||
Sbjct 839 CTGCTGCATCCAAAGCGGTTG-TAACACCGCAACAGCCTGT-GATCACTGGTAATACTAA 896
Query 1018 CAGAAGCAATGCCCGTGCATCAAGCAACCGCAGCCTCGCCATTGGAAGTCAATATATCAA 1077
||| |||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 897 CAGGAGCAATGCGCGTGGATCAAGTAACCGCAGCCTCGCCATTGGAGGTCAATATATCAA 956
Query 1078 TCCTTCTACAGAATCTTTACCTAACAACAGAGGAGTTTCGATATATCCTTCCACCGTCAA 1137
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 TCCTTCTACAGATTCTCTACCTAACAACAGAGGAGTTTCGATATATCCTTCCACCATCAG 1016
Query 1138 CTTACAACCCAAGGAATCTCCGGTTATTCATCAGAAACACAGAAACAACAACAAC--C-- 1193
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1017 TTTACAACCCAAGGAATCTCCGATTATTCAGCAGAAACACAGAAACAACAACAACAACAA 1076
Query 1194 C-----TTTTGAGTTTGGACACATATCCTCTGATTCGTTACTCAACCCGAATACCGCAAA 1248
| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1077 CAACCCTTTTGAGTTTGGACACATATCCTCTGATTCGTTACTCAACCCGAATTCCGCCAA 1136
Query 1249 GACCTATGGATCATCGTTC-TTGGATTTCAGCAGCAACCAAGAGAAGCATTCAGGGAATC 1307
||||||||||||||||| | ||| |||||||||||||||| || || ||||||| |||||
Sbjct 1137 GACCTATGGATCATCGTACCTTG-ATTTCAGCAGCAACCAGGACAAACATTCAGTGAATC 1195
Query 1308 ACAATCACAATTCTTGGCCTGAAGAGCTGACATCAGATTGGACACAGCTCTCAATGTCAA 1367
||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1196 ACAATCACAGTTCTTGGCCTGAAGAGCTAAAATCAGATTGGACACAGCTTTCAATGTCAA 1255
Query 1368 TTCCAATAGCATCATCATCCCCTTCCTCCACACACAACAACAACAA---TGCTCAAGAAA 1424
||||||||||||||||||| || ||||||||||||||||||||||| || |||||| |
Sbjct 1256 TTCCAATAGCATCATCATCTCCGTCCTCCACACACAACAACAACAACACTGGTCAAGACA 1315
Query 1425 AAACAACACTCTCGCCTCTCAGGCTATCCCGCGAGCTTGACCTATCGATCCAAACCGATG 1484
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1316 CAACCACACTCTCACCTCTCAGGCTATCCCGCGAGCTTGACCTATCGATCCAAACCGAGG 1375
Query 1485 AAACAACAATCGAGCCTACTGTGAAAAAGGTGAATACTTGGATACCAATCTCATGGGGAA 1544
|||||||| | || ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAACAACACTTGAACCTGCTGTCAAAAAGGTGAATACTTGGATACCAATCTCATGGGGAA 1435
Query 1545 ACTCCTTAGGAGGTCCTCTAGGTGAAGTACTAAACAGTACAACGAATAGTCCAACATTTG 1604
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1436 ACTCCTTAGGAGGTCCTTTAGGTGAAGTACTAAACAGCACAACGAATAGTCCAACATTGG 1495
Query 1605 GATCTTCTCCTACAGGGGTTTTGCAAAAGTCCACATTTTGTTCACTCTCTAACAACAGCT 1664
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1496 GATCTTCTCCTACAGGGGTTTTGCAAAAGTCAACCTTTTGTTCACTCTCTAACAACAGCT 1555
Query 1665 CCGTGAGCAGCCCCATTGCAGAGAACAACA---GACACAATGGCGATTACTTTCATTACA 1721
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1556 CCGTGAGCAGCCCCATTGCAGAGAACAACAACAGAAACAATGGCGATTACTTTCATTACA 1615
Query 1722 CAACCTGA 1729
||||||||
Sbjct 1616 CAACCTGA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5