BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37750.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944068 jgi|Araly1|944068|scaffold_700297.1 2665 0.0
> Ahg944068 jgi|Araly1|944068|scaffold_700297.1
Length=1696
Score = 2665 bits (1443), Expect = 0.0
Identities = 1620/1703 (95%), Gaps = 22/1703 (1%)
Strand=Plus/Plus
Query 258 aaaaagaaaCCATGAAGTCTTTTTGTGATAATGATGATAATAATCATAGCAACACGACTA 317
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 12 AAAAA-AAA-CATGAAGTCTTTTTGTGATAATGATGATAATAATCATAGCAATACGACTA 69
Query 318 ATTTGTTAGGGTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGTAGAGGAGGTAGAG 377
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 70 ATTTGCTAGGTTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGAAGAGGAGGTGGAG 129
Query 378 AAGCTATTTACTCATCTTCAACTTCTTCAGCTGCAACTTCTTCTTCTTCTGTTCCACCTC 437
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 130 AAGCTATTTACTCATCTACAACTTCTTCAGCTGCAACTTCTTCTTCTTCTGTTCCACCAC 189
Query 438 AACTTGTTGTTGGTGACAACACTAGCAACTTTGGTGTTTGCTATGGATCTAACCCAAATG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 190 AACTTGTTGTTGGTGACAACACTAGCAACTTTGGTGTTTGCTATGGATCTAACTCAGCTG 249
Query 498 GAGGAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGATGGTTCTCTTTGCTTAA 557
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 GAGAAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGACGGTTCTCTTTGCTTAA 309
Query 558 TGGAAGCTCTCAACAGATCTTCTCACTCGAATCACCATCAAGATTCATCTCCAAAGGTGG 617
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 310 TGGAAGCTCTCAACAGATCTTCTCACTCAAATCATCATCAAGATTCATCTCCAAAGATGG 369
Query 618 AGGATTTCTTTGGGACCCATCACAACAACACAAGTCACAAAGAAGCCATGGATCTTAGCT 677
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 370 AGGATTTCTTTGGGACCCATCACAACAACACAAGTCCCAAAGAAGCCATGGATCTTAGCT 429
Query 678 TAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACGACTACAAACTTTCAAGAGT 737
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 430 TAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACAAATACAAACTTTCAAGAGT 489
Query 738 TCTTTAGCTTCCCTCAAACCAG-AA--ACCATGAGGAAGAAACTAGAAATTACGGGAATG 794
|||||||||||||||||||||| || ||||| | |||||||| |||||||||| |||||
Sbjct 490 TCTTTAGCTTCCCTCAAACCAGAAACCACCATCAAGAAGAAACAAGAAATTACGAGAATG 549
Query 795 ACCCTAGTTTGACACATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGT 854
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ACCCTGGTTTGACAAATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGT 609
Query 855 CACTGAGCTTATCCATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTcaccacc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CACTGAGCTTATCCATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTCACCACC 669
Query 915 accaacaaaaccaaaaccaaaaccaccaaagccaaaaccaccaGCAGATCTCTGAAGCTC 974
| | | || |||||||||||||| ||| || |||| | ||||||||||||||||
Sbjct 670 A-C--C--AA-CAAAACCAAAACCA--AAA-CC---ACCA-C--CAGATCTCTGAAGCTC 714
Query 975 TTGTGGAGACAAGCGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGG 1034
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGTGGAGACTAGTGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGG 774
Query 1035 GACAAGAGGATGTTGTAGTTGTTGGTCAGAAACAGATTGTTCATAGAAAATCTATCGATA 1094
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 775 GACAAGAGGAAGTTGTAGTTGTTGGGCAGAAACAGATTGTTCATAGAAAATCTATCGATA 834
Query 1095 CTTTTGGACAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGAT 1154
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTTTGGGCAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGAT 894
Query 1155 ATGAAGCTCATCTATGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGAC 1214
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 895 ATGAAGCTCATCTATGGGACAATAGTTTCAAGAAGGAAGGTCACAGCAGAAAAGGAAGAC 954
Query 1215 AAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTG 1014
Query 1275 CACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCGGAGAATTATCAGAAAG 1334
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 CACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCAGAGAATTATCAGAAAG 1074
Query 1335 AGATTGAAGACATGAAGAACATGACTAGACAAGAATATGTTGCACATTTGAGAAGGAAGA 1394
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 AGATTGAAGACATGAAGAATATGACTAGACAAGAATATGTTGCTCATTTGAGAAGGAAGA 1134
Query 1395 GCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATG 1194
Query 1455 GAAGGTGGCAAGCACGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTT 1514
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1195 GAAGGTGGCAAGCACGGATTGGTAGAGTTGCCGGAAACAAAGATCTCTACCTCGGAACTT 1254
Query 1515 TTGGAACCCAAGAAGAAGCTGCAGAAGCTTACGATGTAGCAGCAATTAAGTTCCGTGGCA 1574
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1255 TTGGAACTCAAGAAGAAGCTGCAGAAGCCTACGATGTAGCAGCAATCAAGTTCCGTGGCA 1314
Query 1575 CAAATGCTGTGACTAACTTTGATATCACGAGGTACGATGTTGATCGTATCATGTCTAGTA 1634
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1315 CAAACGCTGTGACTAACTTTGATATCACGAGGCACGATGTTGATCGTATCATGTCTAGTA 1374
Query 1635 ACACACTCTTGTCTGGAGAGTTAGCGCGAAGGAACAACAACAGCATTGTCGTCAGGAATA 1694
||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 1375 ACACACTCTTGTCTGGAGAGTTAGCAAGAAGGAACAACAACAGCATCGTAGTCAGGAATA 1434
Query 1695 CTGAAGACCAAACCGCTCTAAATGCTGTTGTGGAAGGTGGTTCCAACAAAGAAGTCAGTA 1754
|||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1435 ATGAAGACCAAACCGCTCTTAACGCTGTCGTGGACGGTGGTTCCAACAAAGAAGTCAGTA 1494
Query 1755 CTCCCGAGAGACTCTTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAAAAGA 1814
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1495 CTCCGGAGAGACTTTTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAGAAGA 1554
Query 1815 TGTTCGGATCAAATATGGGCGGAAATATGAGT-CCTTGGACATCAAACCCTAATGCTGAG 1873
|||||||||||||| ||| ||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1555 TGTTCGGATCAAATGTGGTCGGAAATATGAGTTCCT-GGACTTCAAACCCTAATGCTGAG 1613
Query 1874 CTTAAGACCGTCGCTCTTACTTTGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT 1933
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CTTAAGACCGTTGCTCTTACTATGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT 1673
Query 1934 TGATCAACTTCAATGACTAACTC 1956
||||| || ||||| ||||||||
Sbjct 1674 TGATCGACATCAATCACTAACTC 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5