BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37770.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490839 jgi|Araly1|490839|fgenesh2_kg.7__272__AT4G37770.1 2617 0.0
> Ahg490839 jgi|Araly1|490839|fgenesh2_kg.7__272__AT4G37770.1
Length=1727
Score = 2617 bits (1417), Expect = 0.0
Identities = 1662/1772 (94%), Gaps = 49/1772 (3%)
Strand=Plus/Plus
Query 1 GATCGTAGCTTACCTACAAACAACACTCACAATCCAATCAAAACAAAACACTTTTTATtc 60
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1 GATCGTAGCTTACCTACAAACATCACTCACAATCCAATCAAAAC--AACACCTTTTATTC 58
Query 61 tctctcaaaatcttcatatctactttattctcctactcatccatctctgtctctctatct 120
|||||||||| || | | ||||| | | || | | | | ||| | ||||||||||
Sbjct 59 TCTCTCAAAA---TC---T-T-CTTTA-T-T-CT-C-C-T--A-CTC-G-CTCTCTATCT 99
Query 121 ctaGAGCTAATTAAGAAAATGGGTCTCTTGTCAAAGAAAGCTAGTTGCAACACGCACGGC 180
|||||||| | ||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 100 CTAGAGCT-A--AAGAAAATGGGTCTCTTGTCAAAGAAAGCTACTTGCAACACTCATGGC 156
Query 181 CAAGATTCTTCGTATTTTTGGGGTTGGGAAGAGTATGaaaaaaaTCCTTACGACGAGATC 240
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 157 CAAGATTCTTCGTATTTTTTGGGTTGGGAAGAGTATGAGAAAAATCCTTACGACGAGATC 216
Query 241 AAGAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGTTGTCTTTCGATCTC 300
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 217 AAAAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGTTATCTTTCGATCTC 276
Query 301 ATTGAGTCATGGCTTGCTAAGAACCCCGACGCAGCCAATTTCCAAAGAGAAGGCCAATCC 360
|||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||
Sbjct 277 ATTGAGTCATGGCTTGCTAAGAACCCTGACGCAGCAAATTTCAAAAGGGAAGGCCAATCT 336
Query 361 ATATTTCGGGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATGCT 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATATTTCGAGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATGCT 396
Query 421 ATGGCGGATTTCATGTCGGAAAATAGAGGAAATCGAGTTTCTTTCAATCCAAACAAGCTT 480
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 397 ATGGCAGATTTCATGTCGGAAAATAGAGGAAACCGAGTTTCTTTCAATCCGAACAAGCTT 456
Query 481 GTCCTCACCGCTGGTGCTACTCCGGCTAACGAGACTCTCATGTTTTGTCTCGCTGATCCT 540
||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
Sbjct 457 GTCCTCACCGCTGGTGCTACTTCAGCTAACGAAACTCTCATGTTCTGTCTCGCTGATCGT 516
Query 541 GGAGATGCTTTCTTGCTCCCTACGCCGTATTATCCAGGATTTGATAGGGATTTGAAATGG 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 517 GGAGATGCTTTCTTGCTCCCTACGCCATATTATCCAGGATTTGATAGGGATTTGAAATGG 576
Query 601 AGAACCGGAGCTGAGATTGTACCGATCCAGTGTAAGAGTGCAAACGGTTTCCGCATCACA 660
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 577 AGAACCGGAGCTGAGATTGTACCGATCCAGTGTACGAGTGCAAACGGATTCCGCATCACA 636
Query 661 AAAGT-AGCACTTGAAGAAGCCTACGAGCAAGCTCAAAAGCTTAACCTAAAAGTTAAAGG 719
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AAA-TCAGCACTTGAAGAAGCCTACGAGCAAGCTCAAAAGCTTAACCTAAAAGTTAAAGG 695
Query 720 AGTCCTTATAACCAACCCATCTAACCCGTTGGGCACTACAACGACACGAACCGAACTAAA 779
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 696 AGTCCTTATAACCAACCCATCTAACCCGTTGGGTACTACAACGACACGAACTGAACTAAA 755
Query 780 CCATCTCTTGGACTTCATCTCACGTAAGAAGATACATTTGATAAGCGACGAGATCTATTC 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 756 CCATCTCTTGGACTTCATCTCACGTAAGAAGATACATTTGATAAGCGATGAGATCTACTC 815
Query 840 GGGTACCGTTTTCACCAATCCCGGATTCATTAGCGTAATGGAAGTCCTCAAAGACAGAAA 899
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 816 GGGTACCGTTTTCACCTCTCCCGGATTCATTAGCGTAATGGAAGTCCTCAAAGACCGAAA 875
Query 900 GCTCGAAAACACCGATGTTTTCGACCGTGTCCACATTGTTTACAGTTTGTCTAAAGATCT 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 876 GCTCGAAAACACCGATGTTTTCGACCGTGTCCACATCGTTTACAGTTTGTCTAAAGATCT 935
Query 960 AGGCCTACCTGGTTTTCGCGTTGGGGTGATTTACTCCAACGATGATTTTGTTGTCTCCGC 1019
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 936 AGGCCTACCTGGTTTTCGCGTTGGAGCGATTTACTCCAACGATGATTTTGTTGTCTCCGC 995
Query 1020 AGCGACAAAAATGTCCAGTTTCGGTCTAATCTCTTCTCAAACACAATACCTCTTGTCCGC 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 996 AGCGACAAAAATGTCCAGTTTCGGTCTAATCTCTTCTCAAACACAATACCTCTTGTCCAC 1055
Query 1080 ATTGTTATCAGACAAGACCTTCACCAAAAACTACCTCGAAGAAAACCAAATCCGGCTCAA 1139
|||| |||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1056 ATTGCTATCCGACAAGAACTTCACTAAAAACTACCTCGAAGAGAACCAAATCCGGCTCAA 1115
Query 1140 GAACAGACACAAGAAGCTCGTCTCGGGTCTAGAGGCTGCAGGCATCGAGTGTCTCAAGAG 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GAACAGATACAAGAAGCTCGTCTCGGGTCTAGAGGCTGCAGGCATCGAGTGTCTCAAGAG 1175
Query 1200 CAACGCCGGACTCTTCTGTTGGGTTGACATGAGACACCTATTAAAATCAAACACGTTCGA 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1176 CAACGCCGGACTCTTCTGTTGGGTTGACATGAGACACTTATTAAAATCAAACACGTTCGA 1235
Query 1260 AGCCGAGATTGAGCTATGGAAAAAGATCGTTTACGAGGTTAAGCTCAATATCTCTCCCGG 1319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1236 AGCCGAGATTGAGCTATGGAAAAAGATCGTTTACGAGGTTAAACTCAATATCTCTCCCGG 1295
Query 1320 TTCTTCGTGCCATTGCAACGAACCGGGTTGGTTTAGGGTTTGTTTTGCGAATTTGAGCGA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1296 TTCTTCGTGCCATTGCAACGAACCGGGTTGGTTTAGGGTTTGTTTTGCGAATATGAGCGA 1355
Query 1380 AGAGACATTAAAGGTAGCGTTGGATAGATTGAAGAGGTTCGTTGATGGACCGTCGCCTAC 1439
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1356 AGAGACATTAAAGGTAGCGTTGGATAGATTGAAGGGGTTCGTTGATGGACCGTCGTCTAC 1415
Query 1440 TAGAAGAAGTCAAAGTGAACATCAAAGACTAAAGAATCTAAGGAAGATGAAAGTCTCTAA 1499
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1416 TAGAAGAAGTCAAATTGAACATCAAAGACTAAAGAATTTAAGGAAGATGAAAGTCTCTAA 1475
Query 1500 TTGGGTTTTCCGGCTATCGTTTCACGACCGTGAACCCGAGGAACGATAGTCTG-TTTTTa 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1476 TTGGGTTTTCCGGCTATCGTTTCACGACCGTGAACCCGAGGAACGATAGTCTGGTTTTTT 1535
Query 1559 aaaaaaaGTTAAA-GTGTAATAAGTATGtttttttGGTCATTATTTACAAGTGATTGTTG 1617
| ||| |||||| ||||||||||| | |||||| |||||||||||| ||| || |
Sbjct 1536 TATAAA-GTTAAAAGTGTAATAAGT-T-TTTTTT-GGTCATTATTTA----TGA--GT-G 1584
Query 1618 GGCAAATGTATAttttttttAATATCAGAATTTGATATTTTGGTATAGttttttttAGGG 1677
| ||| | |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1585 ---AT-TGT-T-TTTTTTTTAATATCAGCTTTTGATATTTTGGTATAGTTTTT---AGGA 1635
Query 1678 AGAAAGTTCACTCATTCCGTAAGTGTAAC-GGATAATGCAGTGTGGCTTTTCTTATGTAT 1736
||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 1636 AGAAAGTTCACTCATTCCGTACGTGAAAATGGATAATGCAGTGTGGCTTTTCTTATGTAT 1695
Query 1737 AATTTACTGTCACTTTCTAATGATATTTAAAA 1768
|||||||||||||||||||||||||||| |||
Sbjct 1696 AATTTACTGTCACTTTCTAATGATATTTCAAA 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5