BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37780.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490838 jgi|Araly1|490838|fgenesh2_kg.7__271__AT4G37780.1 1507 0.0
Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1 243 3e-63
Ahg894175 jgi|Araly1|894175|Al_scaffold_0006_2171 161 8e-39
> Ahg490838 jgi|Araly1|490838|fgenesh2_kg.7__271__AT4G37780.1
Length=1109
Score = 1507 bits (816), Expect = 0.0
Identities = 1028/1124 (91%), Gaps = 40/1124 (4%)
Strand=Plus/Plus
Query 10 aaaaaaaaaGAATAAGAA-GAAAATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGA 68
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 3 AAAAAAAAAGAATAA-AACAAAAATGGGAAGAGCACCGTGCTGCGACAAGACAGCGGTGA 61
Query 69 AGAAAGGGCCATGGTCGACGGAGGAAGATGCCGTGCTTAAGTCTTACATCGAAAAACACG 128
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 62 AGAAAGGGCCATGGTCGACGGAGGAAGACGCGGTGCTTAAGTCTTACATCGAAAAACACG 121
Query 129 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATAAAGAGGTGCGGGAAGA 188
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 122 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATTAAGAGATGCGGGAAAA 181
Query 189 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 241
Query 249 ATGAAGAAGATTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCA 308
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 ATGAAGAAGACTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATTA 301
Query 309 TTGCTTCACAATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGC 368
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 302 TTGCTTCACAATTACCGGGAAGAACAGATAACGACATCAAAAACTATTGGAACACTAGGC 361
Query 369 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 421
Query 429 TTGAGCGTGGAACAACATCATCATCATCGAGTCAGAACCAGATCCAAATCTTTCATGATG 488
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 422 TCGAGCGTGGAACAACATCATCATCATCGAGTCAGA------TCCAAATGTTTCATGATG 475
Query 489 AGAACACCAAATCGAACCAAACATTATATAATCAAGTGGTGGATCCATCAATGAGAGCTT 548
|||| |||||||| |||||||||||||| |||||||||||||||||||||| | | | |
Sbjct 476 AGAATACCAAATCAAACCAAACATTATACAATCAAGTGGTGGATCCATCAACAACATCCT 535
Query 549 TTGCCATGGAAGAACAAAGCATGATCAAGAATCAGATATTGGAACCATTTTCTTGGGAAC 608
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 536 TTGCCATGGAAGAACAAAGCATGATCAAGAATCCGATATTGGAACCCTTTTATTGGGAAC 595
Query 609 CAAACAAGGTTTTGTTTGATGTTGATTATGATGCAGCTGCTTCATCTTA---TCATCATC 665
||||||| |||||||||||| |||| |||||||||||||||| ||||| ||||||||
Sbjct 596 CAAACAATGTTTTGTTTGATAATGATCATGATGCAGCTGCTTCGTCTTACCATCATCATC 655
Query 666 ATG--CAT-C--CCC-ATCATTGAACTCCATGAGCAGTACTAGTAGTATTGGTACTAATA 719
|| ||| | ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 ATCATCATTCATCCCCATCATTGAACTCCATGAGCAGTAGTAGTAGTATTGGTACTAAT- 714
Query 720 ATTCATCTTTACAAATGTCTCACTACACCGTC-AATCACAATGATCATG---ATCAACCA 775
| ||||| |||||||||||||||||||| || |||||||||||||||| |||||| |
Sbjct 715 -T-CATCTCTACAAATGTCTCACTACACC-TCTAATCACAATGATCATGGTGATCAACAA 771
Query 776 GATATGTTCTTTATGGACGGGTTTGAGAATTTCCAGGCCGAGCTATTTGATGAGATAGCC 835
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 772 GATATGTTCTTTATGGCCGGTTTTGAGAATTTCCAGGCCGAGCTGTTTGATGAGATAGCG 831
Query 836 AACAACAACACGGTAGAAAAT-GGCTTTGACGGAACCGAGAT-CCTGATCAATAACAACT 893
||||||||||||| ||||| | || ||| | |||||||| || || | || |||||||
Sbjct 832 AACAACAACACGGAAGAAA-TCGGGTTTCATGGAACCGAAATGCC--A--AACAACAACT 886
Query 894 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 946
Query 954 TGGATTAATTAGATCATTAATAGATACAGATATTATATGCCAATGTACTTAGGTTAAATC 1013
|| |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 947 TGAATTAATTAGATCTTTATTTGATACAGATATGATATGCCAATGTACTTAGGTTAAATC 1006
Query 1014 ATGTTTTTT-GT-T-TGTCTG--ATCTCTTAAAATGTTGAAGGCGTGAAAGAAG-AAAAG 1067
| ||||||| || | ||| || |||||||||||||||||||||||||||||| ||||
Sbjct 1007 ACGTTTTTTTGTGTGTGTGTGTTATCTCTTAAAATGTTGAAGGCGTGAAAGAACCAAAA- 1065
Query 1068 CCCTAGAAGTGTATTACACAAAGATT-TTTGCTCTTTGCAATAT 1110
||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1066 CCCTAGAAGTGTATTACACAATTTTTGTTTGCTTTTTGCAATAT 1109
> Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1
Length=1325
Score = 243 bits (131), Expect = 3e-63
Identities = 302/383 (79%), Gaps = 18/383 (5%)
Strand=Plus/Plus
Query 26 AAGAAAATGGGAAGAGCACCGTGCTGCGACAA-GATGGCGGTGAAGAAAGGGCCATGGTC 84
||||| ||||||||||||||||| || || || | | |||||||||||||| |||||
Sbjct 11 AAGAAGATGGGAAGAGCACCGTGTTGTGATAAGGCCAAC-GTGAAGAAAGGGCCTTGGTC 69
Query 85 GACGGAGGAAGATGCCGTGCT-TAAGTCTTACATCGAAAAACA-CGGCACCGGCA-ACAA 141
| | || ||||| ||| || ||| |||||||| | || | ||||| || | |||
Sbjct 70 GCCTGAAGAAGACGCCAAACTCAAAG-ATTACATCG-AGAATAGTGGCACAGG-AGGCAA 126
Query 142 CTGGATTTCCCTCCCTC-AGAGAATTGGGATAAAGAGGTGCGGGAAGAGTTGTC--GTTT 198
||||| | | |||| | || ||||| ||| ||| || || |||||||| | | ||
Sbjct 127 TTGGATCGCTTTGCCTCAAAAG-ATTGGTTTAAGGAGATGTGGAAAGAGTTG-CAGGCTT 184
Query 199 GAGATGGCTTAATTACTTGAGGCCTAAC-TTAAAGCATGGAGGCTTCACCGATGAAGAAG 257
|| ||||| || || ||||| || ||| | ||| ||||| |||||| |||| |||||||
Sbjct 185 -AGGTGGCTCAACTATTTGAGACCAAACATCAAA-CATGGTGGCTTCTCCGAGGAAGAAG 242
Query 258 ATTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCATTGCTTCAC 317
| |||||||||| | |||||| |||| ||||| |||||||||||||| |||||| |||
Sbjct 243 ACAACATCATTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTGCAC 302
Query 318 AATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGCTGAAGAAGA 377
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 303 AATTGCCGGGAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGA 362
Query 378 AGCTAT-TGAGCAAGCAAGGGAA 399
|||| | ||| ||| ||| ||||
Sbjct 363 AGCT-TCTGAACAAACAAAGGAA 384
> Ahg894175 jgi|Araly1|894175|Al_scaffold_0006_2171
Length=993
Score = 161 bits (87), Expect = 8e-39
Identities = 273/362 (75%), Gaps = 16/362 (4%)
Strand=Plus/Plus
Query 32 ATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGAAGAAAGGGCCATGGTCGACGGAG 91
||||||||||| || || |||||||||| |||||| |||||| |||||| | |||
Sbjct 1 ATGGGAAGAGCTCCATGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAG 60
Query 92 GAAGA-TGCCGTGCTTA-AGTCTTACATCGAAAAACACGGCACCGG-CAACAACTGGATT 148
||||| | | |||| || |||||||||||| | || | || | || |||||
Sbjct 61 GAAGACT-CTAAACTTAGAG-ATTACATCGAAAAGTATGGTAATGGTGGA-AATTGGATC 117
Query 149 TCCCTCCCTCAGAGAA-TTGGGATAAAGAGGTGCGGGAAGAGTTGTCGTTTGAGATGGCT 207
|| ||||| | | || || | | ||| || |||||||||||| | ||||| |||||
Sbjct 118 TCTCTCCCCCTTA-AAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGATTGAGGTGGCT 176
Query 208 TAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCGATGAAGAAGATTA-CATCA 266
|| || ||||| || ||| |||| ||||| | |||| | || |||||||| | ||||
Sbjct 177 AAACTATTTGAGACCAAACATAAAACATGGTGACTTCTCTGAGGAAGAAGA-CAGGATCA 235
Query 267 TTTGCAGCCT-TTACATTACTATTGGAAGCAGGTGGTCTATCATTGCTTCACAAT-TACC 324
||| ||||| || | | | ||||||||||||||||| || || || | | || ||||
Sbjct 236 TTTTTAGCCTCTT-CGCTGCCATTGGAAGCAGGTGGTCAATAATAGCAGCTC-ATCTACC 293
Query 325 GGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGCTGAAG-AAGAAGCTAT 383
||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||| || |
Sbjct 294 GGGAAGAACAGACAACGACATCAAAAACTATTGGAACACAAAGCT-AAGGAAGAAACTCT 352
Query 384 TG 385
||
Sbjct 353 TG 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5