BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37790.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1 1498 0.0
Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1 422 4e-117
> Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1
Length=1150
Score = 1498 bits (811), Expect = 0.0
Identities = 928/982 (95%), Gaps = 18/982 (2%)
Strand=Plus/Plus
Query 75 TCTTGGTTTCATTTCGTCCCATAATCTTCCAAACTTCACCAGAAGAAATTCTTAACAAAC 134
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 TCTTGGTTTCATTTCGTCCCATAATCATCCAAACTTCACCAAAAGAAATTCTTAACAAAC 60
Query 135 -AATTTTCTTCATAATATTAATTCTCAAGATCTTAAAGATTAT-ATTAATACGAAGAGAA 192
||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||
Sbjct 61 TTTTTTTCTTCATAGTATTACTTCTGAAGATCTTAAAGATT-TGATTAATACGAAGAGAA 119
Query 193 AATTCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTC 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATTCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTC 179
Query 253 ACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCTCCACTGTGGACCATCG 312
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 180 ACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCGCCACCGTAGACCACCG 239
Query 313 TTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAA 372
| |||||||||||||||||||||||||||||||||| || |||||||| ||||||| |||
Sbjct 240 TCTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTCTCTGGTGAGAGTTACAAGACCAA 299
Query 373 GACTGGTGCCGGCGCCGGCGACCAAATTTGCCGGCAGACCTCGTCCCACAGCGGCATCTC 432
||||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 300 GACTGCTGCCGGCGCCGGGGACCAAATTTGCCGACAGACTTCGTCTCACAGCGGCATCTC 359
Query 433 ATCTTTCTCGAGCGGAAGGGTAaagagagaaagagaaatctccggcggcgatggagaaga 492
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 360 ATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTACGGCGGCGACGGAGAAGA 419
Query 493 agaggcggaggagacgacggagagagTGGTGTGTTCGAGAGTGAGTGATGATCATGACGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGAAGA 479
Query 553 TGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTCTTCT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 TGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTGTTCT 539
Query 613 CGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTGCGAG 672
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 CGAAGATAGCTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAAATCTTGCGAG 599
Query 673 ACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAGAAC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 ACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAGGAC 659
Query 733 AAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAAC 792
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 660 AAAACTAAAGCAAACAGAAGTTGATTGTGAGTTTTTGAAGAAATGCTGTGAGACTTTAAC 719
Query 793 GGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCA 852
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAAATGTCTCA 779
Query 853 ACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAGAGACT 912
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACCTTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAGAGACT 839
Query 913 CGGCGGTGGTGGTG----T-C-GGAGGAG-------A--TACGACGGCGGTTGATGAAGA 957
|||||||||||||| | | ||||||| | |||| |||||||||||| |||
Sbjct 840 CGGCGGTGGTGGTGGAGGTGCCGGAGGAGTTGGCGGAGGTACGGCGGCGGTTGATGGAGA 899
Query 958 AACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTTCTATAACCCTTTCACTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTTCTATAACCCTTTCACTAA 959
Query 1018 TCCTTCTGCAGCATGTTAGTTA 1039
||||||||||||||||||||||
Sbjct 960 TCCTTCTGCAGCATGTTAGTTA 981
Score = 279 bits (151), Expect = 3e-74
Identities = 163/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1070 ttttttttttGTTTCTTAAATCAAATTAGGAATTAGTTAGAAGATAAATCCCAGGGAAAA 1129
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 982 TTTTTTTTTTGTTTCTTGAATCAAATTAGGAATTAGTTAGACGATAAATCCCAGGGAAAA 1041
Query 1130 AATATTACGTTGAAATTGGGGGGAAATGGGGTATAGTCTTTATAGATAAGACTCTTCAAC 1189
| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1042 AGTATTACGTTCAAATTGGGGGAAAATGGGGTATAGTCTTTATAGATAAGACTCTTCAAC 1101
Query 1190 GATTCCACTTTATTTTTCGGTGGGATTGTTGGTTGATGAAGaaaaaaaa 1238
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1102 GATTCCACTTTATTTTTCGGTGGGATTGTTGGTTGATGAAGCAAAAAAA 1150
> Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1
Length=1159
Score = 422 bits (228), Expect = 4e-117
Identities = 673/874 (77%), Gaps = 85/874 (10%)
Strand=Plus/Plus
Query 196 TCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACC 255
||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 101 TCAGATGGGTTTTGATGATTCATGCAACACAGGTCTTGTTCTTGGATTAGGTCTCTCACC 160
Query 256 AACGCCTAATAATTACAATCA-TGCCATCAAGAAATCTTCCTCCACTGTGGACCATCGTT 314
||| || |||||||||| | | ||||||| || | | ||| | || |||
Sbjct 161 AACTCCAAATAATTACAGT-AGTGCCATC-AG--A-C--GATCC-C------CC--GGTT 204
Query 315 TCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAGA 374
|| | |||||| |||||||||||||||||||| ||||| || || | | | |
Sbjct 205 GCA--A-GCTCGAGCCGTCGTTGACTCTAAGCCTCTCCGGCGATCCCT-C--GGT-TA-C 256
Query 375 C-TGGTG-CCGGCGCCGGCGACCAAATTTGCCGGCAGACCTCGTCCCACAGCGGCA-TCT 431
| ||||| |||| | | ||||| | ||||| ||||| || || |||||||| | |||
Sbjct 257 CGTGGTGACCGGAG-C--TGACCAGCTATGCCGTCAGACGTCATCTCACAGCGG-AGTCT 312
Query 432 CATCTTTCTCGAGCGGAAGGGTAaagagagaaagagaaatctccggcggcgatggagaag 491
| |||||||| ||||| ||||| | || ||||||| | ||| | || ||| |
Sbjct 313 CTTCTTTCTCAAGCGGGAGGGT--GGTGA-AAAGAGAGAGAGACGGTAGAGA-AGAGTCG 368
Query 492 -aagaggcggaggagacgacggagagagTGGTGTGTTCGAGAGTGAGTGATGATC-ATGA 549
|||| ||| ||||||||||||||| || | | | | | |||| | | ||||
Sbjct 369 CCGGAGGAGGAAGAGACGACGGAGAGA---GT-T-AT--A-A---A-TGATTA-CAATGA 415
Query 550 CGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTCT 609
|||||||||||| |||||||| | ||||| ||||| || || ||| |||||||||||||
Sbjct 416 AGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAAGAACAATCTGCTCT 475
Query 610 TCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTGC 669
||| || |||| |||||| | ||||||||||||||||||||||||||| |||| ||| ||
Sbjct 476 TCTTGAGGATAGCTTCAAGCATCATAGCACCCTTAATCCCAAGCAAAAGCAAGTTCTGGC 535
Query 670 GAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAG 729
||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||
Sbjct 536 TAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAG 595
Query 730 AACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTT 789
||||| || |||||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 596 GACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAAATGTTGTGAAACATT 655
Query 790 AACGGATGAGAATA-GAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGT 848
||| |||||||| | || | ||||| |||||| ||||||| || || | ||||||||
Sbjct 656 AACAGATGAGAACATGA-GACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGA 714
Query 849 CTCA--A-CCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTG 905
|||| | || ||||||||||||||||| || ||||| | || ||||| ||||||||||
Sbjct 715 CTCATCAGCCTTTTTACATGCACATGCCTGCATCGACTCTAACGATGTGTCCTTCTTGTG 774
Query 906 AGAGACTCGGCG--G-TGGTGGTG-TCGGAGGAGATA-CG--A-CG-G-C----G-G-T- 948
||| | |||||| | ||| ||| | ||||||| | || | || | | | | |
Sbjct 775 AGATAATCGGCGCCGGTGGCGGTAAT-GGAGGAGGTGGCGGCAGCGTGGCTACCGCGGTG 833
Query 949 -T-G---ATG-AAGAAACGGCGAAAGGAGCTTTCTCCATCGTCA-CAAAGCCTCGTTTCT 1001
| | ||| ||| | |||| |||||||||||||||||| || ||||||||| ||||
Sbjct 834 GTTGTGGATGGAAGTA-CGGCCAAAGGAGCTTTCTCCATC-TCCTCAAAGCCTCACTTCT 891
Query 1002 AT-AACCCTTTCACTAATCCTTCTGCAGCATGTT 1034
| |||||||| |||||||| |||||||| ||||
Sbjct 892 -TCAACCCTTTTACTAATCCATCTGCAGCTTGTT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5