BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37800.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490836 jgi|Araly1|490836|fgenesh2_kg.7__269__AT4G37800.1 1570 0.0
> Ahg490836 jgi|Araly1|490836|fgenesh2_kg.7__269__AT4G37800.1
Length=1061
Score = 1570 bits (850), Expect = 0.0
Identities = 989/1053 (94%), Gaps = 22/1053 (2%)
Strand=Plus/Plus
Query 1 AACAAACTCATCATCATAAGCAACAATGGTGGTGTCACTCTTCTCTTCCAGAAATGTTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AACAAACTCATCATCATAAGCAACAATGGTGGTGTCACTCTTCTCTTCAAGAAATGTTTT 60
Query 61 CTATACG-TTAAGCTTATGCTTATTTGCAGCATTATACCAGCCGGTTAT-GAGTAGACCG 118
|| | || || ||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 61 CTTTTCGATT-AGCTTATGCTTATTTGCAGCATTGTACCAGCCGGTT-TCGAGTAGACCG 118
Query 119 GCTAAGTTTGAAGATGACTTTAGGATCGCATGGTCCGATACTCATATCACTCAAATTGAC 178
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 GCTAAGTTTGAAGATGACTTTAGGATCACATGGTCCGATACTCATATCACTCAAATTGAT 178
Query 179 GGAGGCAGAGCCATTCAGCTCAAATTGGACCCTAGCTCAGGATGTGGATTTGCTTCGAAG 238
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAGGAAGAGCCATTCAGCTTAAATTGGACCCTAGCTCAGGATGTGGATTTGCTTCGAAG 238
Query 239 AAGCAATACTTGTTCGGCCGTGTGAGCATGAAAATCAAACTGATCCCCGGTGATTCTGCC 298
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 239 AAGCAATACTTGTTCGGCCGCGTGAGCATGAAAATCAAACTGATTCCCGGTGATTCGGCC 298
Query 299 GGGACTGTCACTGCCTTCTACATGAATTCAGATACCGATTCGGTACGAGACGAGCTTGAT 358
|| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 299 GGAACTGTCGCTGCCTTCTACATGAATTCAGATACCAATTCTGTACGAGACGAGCTTGAT 358
Query 359 TTTGAGTTCTTAGGAAATCGAAGTGGACAACCTTACACAGTGCAAACCAATGTGTTTGCT 418
|| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTCGAGTTCCTAGGAAATCGAAGTGGACAACCTTACACAGTACAAACCAATGTGTTTGCT 418
Query 419 CATGGTAAAGGCGATAGAGAGCAAAGAGTTAACCTTTGGTTCGACCCTTCTCGTGATTTC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 CATGGTAAAGGCGATAGAGAGCAAAGAGTTAACCTTTGGTTCGACCCTTCTCATGATTTC 478
Query 479 CACGAATATGCCATCTCATGGAACCATCTCCGTATTGTCTTCTACGTAGACAATGTGCCC 538
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 479 CACGAATACGCCATCTCATGGAACCATCTCCGTATCGTGTTCTACGTAGACAATGTGCCC 538
Query 539 ATCAGGGTTTACAAGAACAATGAGGCAAGGAAAGTACCATACCCAAGATTCCAACCAATG 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTAGGGTTTACAAGAACAATGAGGCAAGGAAAGTACCATACCCAAGATTCCAACCAATG 598
Query 599 GGTGTATATTCCACGTTATGGGAAGCCGATGATTGGGCGACACGTGGAGGAATAGAGAAA 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTATATATTCCACGTTATGGGAAGCCGATGATTGGGCGACACGTGGAGGAATAGAGAAA 658
Query 659 ATCAATTGGTCGAGAGCGCCATTTTATGCTTATTACAAAGATTTTGATATAGAAGGATGT 718
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 ATCAATTGGTCGGGAGCGCCATTTTATGCTTACTACAAAGATTTTGATATAGAAGGATGT 718
Query 719 CCGGTTCCAGGACCCGCA-G-ATTGTCC-CGCTAATTCGAAGAATTGGTGGGAAGGCAGT 775
|||||||| ||| ||| | | ||||||| | |||| ||||||||||||||||||| |||
Sbjct 719 CCGGTTCCGGGA-CCG-ACGTATTGTCCTAG-TAATCCGAAGAATTGGTGGGAAGGAAGT 775
Query 776 GCGTACCACCAGTTGAGTCCGGTGGAAGCTCGAAGTTATAGATGGGTCCGAGTGAACCAT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCGTACCACCAGTTGAGTCCGGTGGAAGCTCGAAGTTATAGATGGGTCCGAGTGAACCAT 835
Query 836 ATGGTCTACGATTATTGCACTGACAAATCTCGTTTTCCTGTTCCACCTCCAGAATGCTCG 895
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATGGTCTACGATTATTGTACCGACAAATCTCGTTTTCCTGTTCCACCTCCAGAATGCTCG 895
Query 896 GCTGGAATCTGATCCAAACATTATTGTCTTAAAAGCAAAACAAGTGCGAAGTGGTTCCAT 955
|||||||| |||||||| ||| ||||||||||||| ||| |||||||||| |
Sbjct 896 GCTGGAATATGATCCAA-CATCATTGTCTTAAAAG---------TGCCAAGTGGTTCCGT 945
Query 956 AAGCAACGTTGCAATGTATGTGAAGTGATTAATGAGTCTTGTGGTATGTGGTGAAT-TGC 1014
||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 946 AAGAAAAGTTGCAATGTATGTGAAGTGATTAATGAGTCTTGTGGTATGTGG-GAAACTAT 1004
Query 1015 TCATAATCGATCTGATTGTGGTCAAATGTTCAT 1047
||||||| |||||||||||||||||||||||||
Sbjct 1005 TCATAATTGATCTGATTGTGGTCAAATGTTCAT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5