BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37810.1

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg353057 jgi|Araly1|353057|fgenesh1_pg.C_scaffold_7000230           621    2e-177


> Ahg353057 jgi|Araly1|353057|fgenesh1_pg.C_scaffold_7000230
Length=381

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 371/387 (96%), Gaps = 6/387 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGTGGAGCAGCAACATGTCAAGCTTTCTACTGATTTTGCTCATTCTTAATTCGACC  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTGGAGCAGCAAAATGTCAAGCTTTCTACTGATTTTGCTCATTCTTAATTCGACC  60

Query  61   CATTTCAGTCTAATGGCTAATGGTAGACCAGAGCCTGACTCTGTCGAATTCACCAAGAGT  120
            |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||
Sbjct  61   CATTTCAGTCTAATGGCTAATGGTAGACCAGAGCCAAACTCAGTCGAATTCACCAAGAGT  120

Query  121  GGAGATCAAGATGTGAAGATGATGATGAGAGGTCTAATAGGATCAAGACCACCAAGATGT  180
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAGATCAAGATGAGAAGATGATGATGAGAGGTCTAATAGGATCAAGACCACCAAGATGT  180

Query  181  GAGAGAGTAAGATGTCGTTCTTGTGGTCATTGTGAAGCAATTCAAGTTCCTACAAATCCT  240
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GAGAGAGTGAGATGTCGTTCTTGTGGTCATTGTGAAGCAATTCAAGTTCCTACAAATCCT  240

Query  241  CAAACAAAGCTTCACTCTCCTTTAACTACTTCTTCTTCTTCTTCCTCTGAGACTATTCAT  300
            |||||||||||||||||||||||   |||  |  |||||||||||||||||| |||||||
Sbjct  241  CAAACAAAGCTTCACTCTCCTTT---TAC--CA-CTTCTTCTTCCTCTGAGATTATTCAT  294

Query  301  CTTGACTACACCAGAGGAGATGATAGTACTAATTACAAACCCATGAGCTGGAAATGCAAA  360
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  CTTGATTACACTAGAGGAGATGATAGTACTAATTACAAACCCATGAGCTGGAAATGCAAA  354

Query  361  TGTGGTAACTCTATCTACAACCCTTGA  387
            |||||||||||||||||||||||||||
Sbjct  355  TGTGGTAACTCTATCTACAACCCTTGA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21519752196


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5