BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G37830.1

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944059 jgi|Araly1|944059|scaffold_700288.1                        547    3e-155


> Ahg944059 jgi|Araly1|944059|scaffold_700288.1
Length=362

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 343/365 (94%), Gaps = 5/365 (1%)
 Strand=Plus/Plus

Query  45   AGAAAAAGAACAAGGAAGATCCCGGAAAATGGCAACGGCGATTGTACGTTCAGCTCTTTC  104
            |||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    AGAAGAAGAAGAA-GAAGATCCCGGAAAATGGCTACGGCGATTGTACGTTCAGCTCTTTC  59

Query  105  CCGAGCAGTGACT-CGCGCAGCTCCGAAG-ACATCCGTCGCTCCTAAGCGAAACTTTTCC  162
            |||||||| || | ||||  |||||| || ||||||||||||||||||||||||||||| 
Sbjct  60   CCGAGCAGCGA-TCCGCGTTGCTCCG-AGAACATCCGTCGCTCCTAAGCGAAACTTTTCT  117

Query  163  TCTTCCGCCGGCCATGACGATGCTTATGAAGCTGCGAAGTGGGAGAAGATAACTTATCTG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  118  TCTTCCGCCGGCCATGACGATGCTTATGAAGCTGCGAAGTGGGAGAAGATAACTTATTTG  177

Query  223  GGTATTGCTAGTTGCACTGCTCTAGCTGTCTATGTTTTATCCAAGGGCCATCATCACGGC  282
            ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  178  GGTATTGCTAGTTGCACTGCTTTAGCCGTCTATGTTTTATCCAAGGGCCATCATCACGGC  237

Query  283  GAAGACCCTCCTGCCTATCCGCATATGCACATCCGCAACAAGGAGTTTCCTTGGGGTCCG  342
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct  238  GAAGACCCTCCTGCTTATCCGTATATGCACATCCGCAACAAGGAGTTTCCTTGGGGTCCA  297

Query  343  GATGGTCTGTTTGAGGTGAAGCACAACAAAGAGCACTGAGTCTTGCGTGGTCATAATAAC  402
            ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct  298  GATGGTCTGTTTGAGGTGAAGCACAACGAAGGGCACTGAGTCTTGCGTGTTCACAATAAC  357

Query  403  GTCTT  407
            |||||
Sbjct  358  GTCTT  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20985573950


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5