BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37840.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg490831 jgi|Araly1|490831|fgenesh2_kg.7__264__AT4G37840.1 2178 0.0 > Ahg490831 jgi|Araly1|490831|fgenesh2_kg.7__264__AT4G37840.1 Length=1494 Score = 2178 bits (1179), Expect = 0.0 Identities = 1393/1496 (93%), Gaps = 16/1496 (1%) Strand=Plus/Plus Query 1 ATGACCAGGAAAGAGGTGGTTCTGGCCGTGACGGCTGCAACCATTACGGCGGTTGCAGCA 60 ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGACTAGGAAAGAGGTTGTTCTGGCCGTGACGGCTGCAACGGTTACGGCGGTTGCAGCA 60 Query 61 GGTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGTTGAAACATACGCAGAGA 120 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 GTTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGCGGAAACATACGCAGAGA 120 Query 121 ATTTTGAGGAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAGCTTTGGGCGGTGGCG 180 |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 121 ATTTTGAGAAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAACTCTGGGCGGTGGCG 180 Query 181 GACGCCTTGGTCGCCGACATGACCGCCTCTTTA---------ACCGCCGAGTGTTGCGGT 231 ||||| ||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 181 GACGCTTTGGTCGCCGACATGACCGCCTCTTTAGCCGCTGCGACCGCCGAGTGTTGTGGT 240 Query 232 TCCCTCAACATGCTCGTTTCATTCACCGGTTCTCTCCCTTCCGGTGATGAGAAAGGGGTA 291 || ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||| Sbjct 241 TCTCTCAACATGCTTGTTTCATTCGCCGGTTCACTCCCTTCCGGTGATGAGAAAGGAGTA 300 Query 292 CACTATGGAGTCAACTTGAGAGGCAAGGAACTATTACTGTTACGTGGGACGCTAGGTGGT 351 ||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||| ||| Sbjct 301 CACTATGGAGTTAACTTGAGAGGCAGGGAACTTTTACTGTTACGTGGGACGTTAGGAGGT 360 Query 352 AACGAAGAGCCTATTTCCGATGTACAGAAGCATGAGATTCCGATCCCTGACGATGTTTTA 411 || |||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||| Sbjct 361 AATGAAGAGCCTATTTCTGACGTACATAAGCAGGAGATTCCGATCCCTGAAGATGTTTTA 420 Query 412 AATGGTTCTTTCAAGGAG-TTGTGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 470 |||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 421 AATGGTTCATTCAAGGAGCTT-TGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 479 Query 471 GATGAATCCCGGTGGAGAAGCAGAAGAAGTGAAGAATCTCGGGTTTACGTTGACGCGCTC 530 ||||||||| |||| ||||||||| |||||||| || ||||||||||| ||||||||||| Sbjct 480 GATGAATCCTGGTGAAGAAGCAGAGGAAGTGAATAACCTCGGGTTTACATTGACGCGCTC 539 Query 531 TGTTGAGCAGATTGGGTCACATTCAATCTCGTCGATACATAGGAAGAGTTTAGCAAATGA 590 ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 540 TGTTGAGCAGATTGGGTCAGGTTCAATCTCGGCTATACATAGGAAGAGTTTAGCAAATGA 599 Query 591 CGATGATGAGAAGGTTTTGAAAGATTTGGTGAATGATATGAATGAATCACTGGAAACACA 650 |||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||| Sbjct 600 TGATGATGATAAGGTTTTGAAAGATTTGGTGAATGACATGAATGAATCATTGGAAAGACA 659 Query 651 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACTATAGGAGAATTGGCTGG 710 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 660 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACAATAGGAGAGTTGGCTGG 719 Query 711 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTATGGGAACCAACGC 770 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct 720 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTCTGGGAACTAATGC 779 Query 771 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCTGCGATACGT-GAGCCAC 829 |||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||| Sbjct 780 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCCGCAATA-TTCGAGCCAC 838 Query 830 AAGAGATCGTTGTTAGCACAGAGTGGGGAGATTTCAGATCTTGCCATCTTCCTATAACCG 889 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 839 AAGAGATCGTTGTTAGCACAGAATGGGGAGATTTCAGATCTTGTCATCTTCCTATAACTG 898 Query 890 AGTTCGATGCTTCTCTTGACGCGGAAAGCTTGAATCCCGGACATCGAATATTTGAGAAGA 949 |||| |||||||||||||| || |||||||||||||| ||||||||| |||||||||||| Sbjct 899 AGTTTGATGCTTCTCTTGATGCAGAAAGCTTGAATCCTGGACATCGAGTATTTGAGAAGA 958 Query 950 TGGTGTCAGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTAAAAATGTCTGAAG 1009 ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 959 TGGTGTCTGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTTAGAATGTCTGAAG 1018 Query 1010 AATCTGCTCTCTTTGGAGATACACTACCTCCAAAACTCACAATTCCTTACATTTTATGGT 1069 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1019 AATCTGCTCTCTTTGGAGATACACTGCCTCCAAAACTCACAATTCCTTACATTTTATGGT 1078 Query 1070 CTCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGACTGTAAACAAAA 1129 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1079 CGCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGATTGTAAACAAAA 1138 Query 1130 AGCTCAAGGAAGTTTTCGGTATAATGGATTCAACTCTTGCGGCGAGAGAAGTTGTAGTTG 1189 |||||||||| |||||||| || ||||||||||||||||||||||||||||| ||| ||| Sbjct 1139 AGCTCAAGGAGGTTTTCGGAATCATGGATTCAACTCTTGCGGCGAGAGAAGTGGTAATTG 1198 Query 1190 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGTTTAGCGGGAGCAGGAATAGTTGGGA 1249 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1199 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGCACGGCAGGAGCAGGAATAGTTGGGA 1258 Query 1250 TGATAAAGAAGCTTGGAAGATTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1309 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TGATAAAGAAGCTTGGAAGGTTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1318 Query 1310 TGTATGATCATTATAGGGTATTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTTG 1369 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct 1319 TGTATGATCATTATAGAGTCTTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTCG 1378 Query 1370 GTGATGAGTTATCAGATCACGTCGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1429 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1379 GTGATGAGTTATCAGATCACGTTGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1438 Query 1430 CTCTCTTCCTTGCCGCATGTGGCGACGGT--C-ATCAAGATTCTGAAAGCAAGTGA 1482 ||||||||||||| |||||||| ||||| | | ||||| ||||||||| ||||| Sbjct 1439 CTCTCTTCCTTGCGGCATGTGGAGACGGCGGCCAACAAGAATCTGAAAGCCAGTGA 1494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5