BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37840.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490831 jgi|Araly1|490831|fgenesh2_kg.7__264__AT4G37840.1 2178 0.0
> Ahg490831 jgi|Araly1|490831|fgenesh2_kg.7__264__AT4G37840.1
Length=1494
Score = 2178 bits (1179), Expect = 0.0
Identities = 1393/1496 (93%), Gaps = 16/1496 (1%)
Strand=Plus/Plus
Query 1 ATGACCAGGAAAGAGGTGGTTCTGGCCGTGACGGCTGCAACCATTACGGCGGTTGCAGCA 60
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGACTAGGAAAGAGGTTGTTCTGGCCGTGACGGCTGCAACGGTTACGGCGGTTGCAGCA 60
Query 61 GGTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGTTGAAACATACGCAGAGA 120
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GTTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGCGGAAACATACGCAGAGA 120
Query 121 ATTTTGAGGAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAGCTTTGGGCGGTGGCG 180
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 ATTTTGAGAAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAACTCTGGGCGGTGGCG 180
Query 181 GACGCCTTGGTCGCCGACATGACCGCCTCTTTA---------ACCGCCGAGTGTTGCGGT 231
||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 GACGCTTTGGTCGCCGACATGACCGCCTCTTTAGCCGCTGCGACCGCCGAGTGTTGTGGT 240
Query 232 TCCCTCAACATGCTCGTTTCATTCACCGGTTCTCTCCCTTCCGGTGATGAGAAAGGGGTA 291
|| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 241 TCTCTCAACATGCTTGTTTCATTCGCCGGTTCACTCCCTTCCGGTGATGAGAAAGGAGTA 300
Query 292 CACTATGGAGTCAACTTGAGAGGCAAGGAACTATTACTGTTACGTGGGACGCTAGGTGGT 351
||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||| |||
Sbjct 301 CACTATGGAGTTAACTTGAGAGGCAGGGAACTTTTACTGTTACGTGGGACGTTAGGAGGT 360
Query 352 AACGAAGAGCCTATTTCCGATGTACAGAAGCATGAGATTCCGATCCCTGACGATGTTTTA 411
|| |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 361 AATGAAGAGCCTATTTCTGACGTACATAAGCAGGAGATTCCGATCCCTGAAGATGTTTTA 420
Query 412 AATGGTTCTTTCAAGGAG-TTGTGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 470
|||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGGTTCATTCAAGGAGCTT-TGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 479
Query 471 GATGAATCCCGGTGGAGAAGCAGAAGAAGTGAAGAATCTCGGGTTTACGTTGACGCGCTC 530
||||||||| |||| ||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 480 GATGAATCCTGGTGAAGAAGCAGAGGAAGTGAATAACCTCGGGTTTACATTGACGCGCTC 539
Query 531 TGTTGAGCAGATTGGGTCACATTCAATCTCGTCGATACATAGGAAGAGTTTAGCAAATGA 590
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 540 TGTTGAGCAGATTGGGTCAGGTTCAATCTCGGCTATACATAGGAAGAGTTTAGCAAATGA 599
Query 591 CGATGATGAGAAGGTTTTGAAAGATTTGGTGAATGATATGAATGAATCACTGGAAACACA 650
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 600 TGATGATGATAAGGTTTTGAAAGATTTGGTGAATGACATGAATGAATCATTGGAAAGACA 659
Query 651 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACTATAGGAGAATTGGCTGG 710
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 660 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACAATAGGAGAGTTGGCTGG 719
Query 711 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTATGGGAACCAACGC 770
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 720 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTCTGGGAACTAATGC 779
Query 771 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCTGCGATACGT-GAGCCAC 829
|||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||
Sbjct 780 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCCGCAATA-TTCGAGCCAC 838
Query 830 AAGAGATCGTTGTTAGCACAGAGTGGGGAGATTTCAGATCTTGCCATCTTCCTATAACCG 889
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 839 AAGAGATCGTTGTTAGCACAGAATGGGGAGATTTCAGATCTTGTCATCTTCCTATAACTG 898
Query 890 AGTTCGATGCTTCTCTTGACGCGGAAAGCTTGAATCCCGGACATCGAATATTTGAGAAGA 949
|||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 899 AGTTTGATGCTTCTCTTGATGCAGAAAGCTTGAATCCTGGACATCGAGTATTTGAGAAGA 958
Query 950 TGGTGTCAGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTAAAAATGTCTGAAG 1009
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 959 TGGTGTCTGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTTAGAATGTCTGAAG 1018
Query 1010 AATCTGCTCTCTTTGGAGATACACTACCTCCAAAACTCACAATTCCTTACATTTTATGGT 1069
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 AATCTGCTCTCTTTGGAGATACACTGCCTCCAAAACTCACAATTCCTTACATTTTATGGT 1078
Query 1070 CTCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGACTGTAAACAAAA 1129
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 CGCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGATTGTAAACAAAA 1138
Query 1130 AGCTCAAGGAAGTTTTCGGTATAATGGATTCAACTCTTGCGGCGAGAGAAGTTGTAGTTG 1189
|||||||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct 1139 AGCTCAAGGAGGTTTTCGGAATCATGGATTCAACTCTTGCGGCGAGAGAAGTGGTAATTG 1198
Query 1190 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGTTTAGCGGGAGCAGGAATAGTTGGGA 1249
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1199 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGCACGGCAGGAGCAGGAATAGTTGGGA 1258
Query 1250 TGATAAAGAAGCTTGGAAGATTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1309
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGATAAAGAAGCTTGGAAGGTTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1318
Query 1310 TGTATGATCATTATAGGGTATTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTTG 1369
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 TGTATGATCATTATAGAGTCTTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTCG 1378
Query 1370 GTGATGAGTTATCAGATCACGTCGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1429
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGATGAGTTATCAGATCACGTTGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1438
Query 1430 CTCTCTTCCTTGCCGCATGTGGCGACGGT--C-ATCAAGATTCTGAAAGCAAGTGA 1482
||||||||||||| |||||||| ||||| | | ||||| ||||||||| |||||
Sbjct 1439 CTCTCTTCCTTGCGGCATGTGGAGACGGCGGCCAACAAGAATCTGAAAGCCAGTGA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5