BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37860.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353053 jgi|Araly1|353053|fgenesh1_pg.C_scaffold_7000226 579 2e-164
> Ahg353053 jgi|Araly1|353053|fgenesh1_pg.C_scaffold_7000226
Length=1035
Score = 579 bits (313), Expect = 2e-164
Identities = 487/564 (86%), Gaps = 40/564 (7%)
Strand=Plus/Plus
Query 472 AGCCAAATGCAGCCAAGACCAGGTTCATCAAATAATGTACAAGCTCACACGAG-GGAGGA 530
|||||||||| |||||||||||||||||||| |||||| |||| |||| ||| || |||
Sbjct 472 AGCCAAATGCTGCCAAGACCAGGTTCATCAACTAATGTTGAAGCGCACATGAGCGG-GGA 530
Query 531 TTCGGCAA-TTA--ACTCTCAAAAGCGGAAATCAATGAACAAGAAGGGCCAACCAAGTTC 587
||| |||| | |||||| ||||| |||||| || | |||||| ||||||||||||||
Sbjct 531 TTCTGCAAGAAAGTACTCTCGAAAGCAGAAATCGATTAGCAAGAATGGCCAACCAAGTTC 590
Query 588 CAAATTA-GGCCATCAGAGACCACTGTCCTCAACAAAGCCATTGAGACATGATTCTAAAC 646
|||||| |||| |||||||| |||||||||| ||||||| |||| | ||||| ||||||
Sbjct 591 TAAATTAGGGCC-TCAGAGACAACTGTCCTCATCAAAGCCTTTGACATATGATCCTAAAC 649
Query 647 AACAAAGGGTAGAACAGAGAAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 706
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AACAAAGGGTAAAACAGAGGAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 709
Query 707 CGAAACACCAGTTGATTAGCAAACCACCATTGAAGCGAG---------T---------GA 748
| |||||||||| ||||||| |||||||||||||||||| | ||
Sbjct 710 CCAAACACCAGTCGATTAGCGAACCACCATTGAAGCGAGCTCTTCAACTGAAGAAGAAGA 769
Query 749 AG-A-AA-AAGCCTGTGAAAATGTCAGAAGATGA-TT--TGGCCTTGCAAATGGTTAGAA 802
|| | || ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 770 AGAAGAAGAAGCCAGTGAAAATGTCAGAAGATGATTTGGTGGCCTTGCAAATGGTTAGAC 829
Query 803 AGATGTGCAAGACTGATCGTTTTGCAGGGC--G---T-GACGAAGACTATGATGATAGGT 856
||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 830 AGATGTGCAAGACTGATCGTTTTGCGGGGCGTGATCTCGACGAAGACTATGATGATAGGT 889
Query 857 GCATGGAAGCCAACTTTGATGATATCATGAGGGAAGAGAAACGGAGTGAGAGACTTGCGA 916
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 890 GCATGGAAGCTAACTTTGATGATATCATGAGGGAAGAGAAACGAAGTGAGAAACTTGCGA 949
Query 917 AGAAAGAAGACGCGGAACAACTGCGGTTGGTAGAGGAAGAAGAAAGAGTGAGAAGGCAGA 976
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 950 AGAAAGAAGACGCGGAACAACTGCGGTTGATAGAGGAAGAAGAAAGAGTGAGAAAGCAGA 1009
Query 977 --A-GAAGCAGAAACTTAGCCATT 997
| ||||||||| || |||||||
Sbjct 1010 TCAAGAAGCAGAAGCTAAGCCATT 1033
Score = 303 bits (164), Expect = 2e-81
Identities = 224/251 (89%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 5 AATCAGAGTTTCTTGAATTGCGTCAACGGATTAAGGAATCGATTAGGACGAAGATGCAAA 64
||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||
Sbjct 38 AATCAGAGTTTCTTGAATTCCGTCAACGGATTAAAGAGTCGATTAGGAAGAAGATGCAAA 97
Query 65 GCGGAGATACTATTATTGCTCCAACCTCACAGACACAGTTACATCAGAGCAAAAGTAATC 124
|||| | |||||||| |||||||| |||||| || |||| |||||||||||||||
Sbjct 98 ACGGAAACACTATTATAGCTCCAACATCACAG--AC----ACATGAGAGCAAAAGTAATC 151
Query 125 TTCC--GT-ACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 181
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TTCCTTATAACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 211
Query 182 TCTTACAAGAAAGCAA-GCCTCTTTTAGAAAACGAGACATCAGCAGCTAAAATGTTAAAC 240
|||||||||||||||| || |||||||||||| ||||||| || |||||||||||||||
Sbjct 212 TCTTACAAGAAAGCAAAGCG-CTTTTAGAAAACAAGACATCGGCTGCTAAAATGTTAAAC 270
Query 241 TCTATTCAAAA 251
|| ||||||||
Sbjct 271 TCGATTCAAAA 281
Score = 189 bits (102), Expect = 5e-47
Identities = 129/142 (91%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 340 AATGCGAATGAGGTCAAACGAAAAGCTGAAAAACTTAAGGATGGAAGAGACTACTCATTC 399
|||||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 304 AATGCGAATGAGGTGAAAAGAAAAGCTGAGAAACTTAGGGATGCAAGAGACTACTCTTTC 363
Query 400 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGGAACCACCTAC-TTCTAGACC 458
||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 364 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGCAACCACCTAAGTT-TAGACC 422
Query 459 AAGTTCCACAGAGAGCCAAATG 480
|||||||| ||| | |||||||
Sbjct 423 AAGTTCCAGAGAAATCCAAATG 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5