BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37860.1 Length=1328 Score E Sequences producing significant alignments: (Bits) Value Ahg353053 jgi|Araly1|353053|fgenesh1_pg.C_scaffold_7000226 579 2e-164 > Ahg353053 jgi|Araly1|353053|fgenesh1_pg.C_scaffold_7000226 Length=1035 Score = 579 bits (313), Expect = 2e-164 Identities = 487/564 (86%), Gaps = 40/564 (7%) Strand=Plus/Plus Query 472 AGCCAAATGCAGCCAAGACCAGGTTCATCAAATAATGTACAAGCTCACACGAG-GGAGGA 530 |||||||||| |||||||||||||||||||| |||||| |||| |||| ||| || ||| Sbjct 472 AGCCAAATGCTGCCAAGACCAGGTTCATCAACTAATGTTGAAGCGCACATGAGCGG-GGA 530 Query 531 TTCGGCAA-TTA--ACTCTCAAAAGCGGAAATCAATGAACAAGAAGGGCCAACCAAGTTC 587 ||| |||| | |||||| ||||| |||||| || | |||||| |||||||||||||| Sbjct 531 TTCTGCAAGAAAGTACTCTCGAAAGCAGAAATCGATTAGCAAGAATGGCCAACCAAGTTC 590 Query 588 CAAATTA-GGCCATCAGAGACCACTGTCCTCAACAAAGCCATTGAGACATGATTCTAAAC 646 |||||| |||| |||||||| |||||||||| ||||||| |||| | ||||| |||||| Sbjct 591 TAAATTAGGGCC-TCAGAGACAACTGTCCTCATCAAAGCCTTTGACATATGATCCTAAAC 649 Query 647 AACAAAGGGTAGAACAGAGAAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 706 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 650 AACAAAGGGTAAAACAGAGGAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 709 Query 707 CGAAACACCAGTTGATTAGCAAACCACCATTGAAGCGAG---------T---------GA 748 | |||||||||| ||||||| |||||||||||||||||| | || Sbjct 710 CCAAACACCAGTCGATTAGCGAACCACCATTGAAGCGAGCTCTTCAACTGAAGAAGAAGA 769 Query 749 AG-A-AA-AAGCCTGTGAAAATGTCAGAAGATGA-TT--TGGCCTTGCAAATGGTTAGAA 802 || | || ||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 770 AGAAGAAGAAGCCAGTGAAAATGTCAGAAGATGATTTGGTGGCCTTGCAAATGGTTAGAC 829 Query 803 AGATGTGCAAGACTGATCGTTTTGCAGGGC--G---T-GACGAAGACTATGATGATAGGT 856 ||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| Sbjct 830 AGATGTGCAAGACTGATCGTTTTGCGGGGCGTGATCTCGACGAAGACTATGATGATAGGT 889 Query 857 GCATGGAAGCCAACTTTGATGATATCATGAGGGAAGAGAAACGGAGTGAGAGACTTGCGA 916 |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 890 GCATGGAAGCTAACTTTGATGATATCATGAGGGAAGAGAAACGAAGTGAGAAACTTGCGA 949 Query 917 AGAAAGAAGACGCGGAACAACTGCGGTTGGTAGAGGAAGAAGAAAGAGTGAGAAGGCAGA 976 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 950 AGAAAGAAGACGCGGAACAACTGCGGTTGATAGAGGAAGAAGAAAGAGTGAGAAAGCAGA 1009 Query 977 --A-GAAGCAGAAACTTAGCCATT 997 | ||||||||| || ||||||| Sbjct 1010 TCAAGAAGCAGAAGCTAAGCCATT 1033 Score = 303 bits (164), Expect = 2e-81 Identities = 224/251 (89%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 5 AATCAGAGTTTCTTGAATTGCGTCAACGGATTAAGGAATCGATTAGGACGAAGATGCAAA 64 ||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||| Sbjct 38 AATCAGAGTTTCTTGAATTCCGTCAACGGATTAAAGAGTCGATTAGGAAGAAGATGCAAA 97 Query 65 GCGGAGATACTATTATTGCTCCAACCTCACAGACACAGTTACATCAGAGCAAAAGTAATC 124 |||| | |||||||| |||||||| |||||| || |||| ||||||||||||||| Sbjct 98 ACGGAAACACTATTATAGCTCCAACATCACAG--AC----ACATGAGAGCAAAAGTAATC 151 Query 125 TTCC--GT-ACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 181 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TTCCTTATAACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 211 Query 182 TCTTACAAGAAAGCAA-GCCTCTTTTAGAAAACGAGACATCAGCAGCTAAAATGTTAAAC 240 |||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||| Sbjct 212 TCTTACAAGAAAGCAAAGCG-CTTTTAGAAAACAAGACATCGGCTGCTAAAATGTTAAAC 270 Query 241 TCTATTCAAAA 251 || |||||||| Sbjct 271 TCGATTCAAAA 281 Score = 189 bits (102), Expect = 5e-47 Identities = 129/142 (91%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 340 AATGCGAATGAGGTCAAACGAAAAGCTGAAAAACTTAAGGATGGAAGAGACTACTCATTC 399 |||||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||| ||| Sbjct 304 AATGCGAATGAGGTGAAAAGAAAAGCTGAGAAACTTAGGGATGCAAGAGACTACTCTTTC 363 Query 400 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGGAACCACCTAC-TTCTAGACC 458 ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 364 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGCAACCACCTAAGTT-TAGACC 422 Query 459 AAGTTCCACAGAGAGCCAAATG 480 |||||||| ||| | ||||||| Sbjct 423 AAGTTCCAGAGAAATCCAAATG 444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49674160851 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5