BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37880.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490828 jgi|Araly1|490828|fgenesh2_kg.7__261__AT4G37880.1 2194 0.0
> Ahg490828 jgi|Araly1|490828|fgenesh2_kg.7__261__AT4G37880.1
Length=1580
Score = 2194 bits (1188), Expect = 0.0
Identities = 1482/1616 (92%), Gaps = 51/1616 (3%)
Strand=Plus/Plus
Query 5 ATAATCTGAAGGAGTGATGAGAAAAT-ATTA-ACGaaaaacaaaaaaaaaaagacagaag 62
|||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||
Sbjct 1 ATAATCTGAAGGAGTGATGAGAAAATAAGAACACGAAAACCAAAAAAAAAAAGACAGAAG 60
Query 63 acaaaaaaaaaTCACGAAATCTGATTTTCCTCTCTTTTGCTCGAAGCCAAGTCTCTGCTT 122
|||||||||||||||| | |||||||||||||| || ||
Sbjct 61 -------AAAATCACGAAATCTG---------------GTTCGAAGCCAAGTCTGTG-TT 97
Query 123 TTACTTTGATCCAC-CAACTTCATCTTCAACCTCTCGATTTTAGGTAAGA--TT-CTTAG 178
|||||||||||||| |||||||||||| |||||||||| | ||||| || || |||||
Sbjct 98 TTACTTTGATCCACGAAACTTCATCTTCTACCTCTCGATCTCAGGTACGATTTTCCTTAG 157
Query 179 AGTGA-TTTTGACTTATCTAAGAATGGAGCTAAAGAGCATTAAGGATGCGTTTGATCGTG 237
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGTGATTTTTGAC-TATCTAAGAATGGAGCTAAAGAGCATTAAGGATGCGTTTGATCGTG 216
Query 238 TTGCGACGAAGCAGAAGCTCTCTTATAGCAAAACTAATGAGATTGTTC-ATATGTTGTCT 296
||||||| ||||||||||| |||||||||||||| ||||||||||||| || | |||||
Sbjct 217 TTGCGACCAAGCAGAAGCTTTCTTATAGCAAAACAAATGAGATTGTTCAAT-TACTGTCT 275
Query 297 CAAGAAATCGATAAGGCTTTGAGCATATTAGAGGAGACACCATCATCAGATACTATGCTT 356
||||||||||| ||||||||||| |||||| || ||||||||||||||||||| | ||
Sbjct 276 CAAGAAATCGACAAGGCTTTGAGTATATTACAGAAGACACCATCATCAGATAC--T-CTG 332
Query 357 CTTGATCATAGATCTATCCTCGCTGATGTGAAGAAAGTGTTTATGGAGATTGCTCCAATC 416
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 333 CTTGATCATAGATCTATCCTTGCTGATGTGAAGAAAGTGTTTATGGAGATTGCTCCTATC 392
Query 417 ACTCAACTTGAAGCTACTGAGAAAGAGCTACATGCGGCTTTGACCAAGTACCCTAAAGTT 476
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 393 ACTCAACTTGAAGCTGCTGAGAAAGAACTACATGCGGCTTTGACCAAGTACCCTAAAGTT 452
Query 477 CTT-GAGAAACAGCTGAATCCAGACATATCAAAGGCTTATAGACACAATGTTGAGTTTGA 535
|| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 453 -TTGGAGAAACAGCTGAATCCAGACATATCAAAGGCTTACAGAAACAATGTCGAGTTCGA 511
Query 536 TACTCATATCGTTAACCAGATTATCGCCAACTTTTTCTACCGTCAAGGAATGTTTGACAT 595
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 512 TACTCATATCGTTAACCAGATTATCGCCAACTTTTTCTACCGGCAAGGAATGTTTGACAT 571
Query 596 TGGTGACTGTTTTGTTGCTGAAACTGGTGAATCTGAATGTTCTACAAGACAATCTTTCGT 655
|||||||||||| ||| |||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 572 TGGTGACTGTTTCGTTACTGAAACTGGTGAATCAGAATGTTCCACTAGACAATCTTTTGT 631
Query 656 GGAGATGTATCGGATACTAGAAGCTATGAAGAGACGAGATCTTGAACCGGCTCTTAATTG 715
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 632 GGAAATGTATCGGATACTAGAAGCTATGAAGAGACGTGATCTTGAACCAGCTCTTAATTG 691
Query 716 GGCTGTTTCGAACTCTGACAAACTAAAGGAAGCAAGGTCTGATCTTGAGATGAAGCTTCA 775
||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 692 GGCAGTTTTGAACTCAGACAAACTAAAGCAAGCAAGGTCTGATCTTGAGATGAAGCTTCA 751
Query 776 TAGTCTACACTTTCTGGAAATAGCACGAGGCAAAAACTCCAAAGAAGCTATCGACTATGC 835
||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||| ||
Sbjct 752 CAGTCTACACTTCCTGGAAATAGCGCAAGGCAAAAACTCCAAAGAAGCTATCAACTACGC 811
Query 836 GAGAAAGCATATCGCCACGTTTGCAGATAGCTGCCTCCCGGAGATCCAGAAGCTCATGTG 895
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 812 GAGAAAACATATTGCCACGTTTGCAGATAGCTGCCTCCCGGAAATCCAGAAGCTCATGTG 871
Query 896 TTCTCTCTTATGGAACAGAAAACTCGATAAATCACCATACTCCGAGTTTCTCTCCCCCGC 955
||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 872 TTCACTCTTATGGAACAGAAAACTCGATAGATCACCGTACTCCGAGTTTCTCTCTCCCGC 931
Query 956 TCTGTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACTGCAACCTACTCGGTGAATC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TCTGTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACTGCAACCTACTCGGTGAATC 991
Query 1016 ATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGCACACAAGCGTTACCAGTACTATT 1075
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 992 ATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGTACACAAGCGTTACCAGTACTACT 1051
Query 1076 GAAATACATGAACGTGGTGATGGCGAATAAGAAGCTTGATTGGCAGACCATGGAACAACT 1135
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1052 GAAATACATGAACGTG---ATGGCGAACAAGAAGCTTGACTGGCAGACCATGGAACAACT 1108
Query 1136 TCCTGTTGATGCGCAACTATCCGAGGAGTTTCAGTTTCATTCGGTGTTTGTCTGTCCAGT 1195
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1109 TCCTGTCGATGCGCAACTATCAGAGGAGTTTCAGTTCCATTCAGTGTTTGTCTGTCCAGT 1168
Query 1196 CTCTAAAGAACAGTCAAGTGATGATAACCCTCCGATGATGATGTCTTGTGGACATGTGCT 1255
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1169 CTCTAAAGAACAGTCAAGTGACGACAACCCTCCAATGATGATGTCTTGTGGACATGTGCT 1228
Query 1256 TTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCTCTAAGTCGTCGTTCAAGTGTCC 1315
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1229 TTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCTCTAAGTCGTCTTTCAAGTGTCC 1288
Query 1316 TTATTGCCCAACCGATGTAGACATCTCAAGGTGTAGGCAGTTGCACTTTTGAAACGAAAG 1375
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1289 GTATTGCCCAACCGATGTAGACATCTCGAGGTGTAGGCAGTTACACTTTTGAAACGAAAG 1348
Query 1376 CTCGGGAATTT-GTACGACCGATATAAACTGGAACTAAGTTCTGAATCGGTGAAATCTGT 1434
||||| || | | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CTCGGAAAAAACGAATGACCGGTATAAACTGGAACTAAGTTCTGAATCGGTGAAATCTGT 1408
Query 1435 GTCAAAATTGTAACCTTGTGGTGTTCTCTGTTTCtttttttCATGAAGTTTTTTAAGTGA 1494
|||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 1409 GTCAAAAT-GTAACCTTGTGGTGTTCTCTGTTT-TTTTTT-CATGAAGTTTTTTAAAAGA 1465
Query 1495 TGGGGCTTTGGTGTACAAATTGATCAGGGGAAGTTTTTAGATGATT----GGACATCCCA 1550
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1466 TGAAGCTTTTGTGTACAAATTGATCAGGGGAAGTTTTTAGATGATTTATTGGACATCCCA 1525
Query 1551 TAAGAATGTGTTTTTGGTGTTGTTGCTATTTGTTTGTTAAACCTTT-TGAATATAG 1605
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 1526 TAAGAATGTGTTTTTGGTGTTGTTGCTCTTTGTTTGTTAAAC-TTTCTGAATATAG 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5