BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37895.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490825 jgi|Araly1|490825|fgenesh2_kg.7__258__AT4G37895.1 1964 0.0
> Ahg490825 jgi|Araly1|490825|fgenesh2_kg.7__258__AT4G37895.1
Length=1496
Score = 1964 bits (1063), Expect = 0.0
Identities = 1380/1523 (91%), Gaps = 61/1523 (4%)
Strand=Plus/Plus
Query 1 CACGCGCCAAGCCAAATAGTGTGCGTTGGGATTTCCAAATGAGAGAAGCGCGTGGAAGTC 60
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| | |
Sbjct 1 CACGCGCCGAGCCAAATGGTGTGCGTTGGGATTTCCAAGTGAGAGAAGCGCGTGGACGAC 60
Query 61 ACAAAATCCGGTTGGGCTAATTGGGCTTGGTGGGCCGAGTTTC-TATTACGGTCCGTTAA 119
|||||||| | |||||| |||||||||| |||||||||| ||| | ||||||||||||||
Sbjct 61 ACAAAATCAGCTTGGGCCAATTGGGCTTCGTGGGCCGAG-TTCTTGTTACGGTCCGTTAA 119
Query 120 CACGAAGATGGTGGTGAAGAGATTTTTCTGCCGGCGATCTTCGATCACTTTAGCCGCTTT 179
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 GACGAAGATGGTGGTGAAGAGATTTTTCTGCCGTCGATCTTCGATCACTTTAGCCGCTTT 179
Query 180 CTTAACGGCATCATTAACACTCATTCCGTCGCCATCACCGGAAATATCGTCGACGATTCT 239
||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 180 TTTAACGGCATCGTTAACACTCATCCCGTCTCCGTCACCGGAAATTTCGTCGACGATTCT 239
Query 240 TCTAGCTAATCGCCTTCCGTTCGCCGTCATTCTCCGTAACGGCGTCAATCGCTTCGAGCT 299
|| |||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 240 TCGAGCTAATCTCCTTCCGTTCGCCGTCATCCTCCGTAACGGCGACAATCGTTTCGAGCT 299
Query 300 CGACGAGAACGAGACCATCGATAAACGATCCGTTTCTCGTAGAGACGATATAACTTGCCT 359
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 300 CGACGAGAACGAAACCATCGACAAACGATCCGTTTCTCGTAGAGACGATATCACTTGCCT 359
Query 360 CATCGCTCGCTTCACCATCTCAATATTCCCTCCGCTAACGTCAATAACCGTTACAAGATC 419
|||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||
Sbjct 360 CATCGCTCGCTTCACCATCTCAATCTTCCCTCCACTAACGTCTATAACAGTTACTAGATC 419
Query 420 CACCGGAGATCTACGCGCCGTCGGTAACGACGGAGATTTGATTTTCATGAGCACCGAGTA 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CACCGGAGATCTACGCGCCGCCGGTAACGACGGAGATTTGATTTTCATGAGCACTGAGTA 479
Query 480 CGTCTCGTTACCTCTCCCAACCGCCACAATTGCAGCTTCTGAAGACAGCTTAACGTCCAC 539
||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 480 TGTCTCGTTACCTCTCCCAACCGCTACAATTGCCGCTTCTGAAGACAACTTAACGTCCAC 539
Query 540 GTGTCCAGTAACGGAATCCGTTAACAT-TTTCTTCGTCGTTAACGGTGACGGCGTGTTAA 598
||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||
Sbjct 540 GTGTCCAGTAACGGAATCCGTTATC-TGTTTCTTCGTCGTTAACGGTGACGGCGTATTAA 598
Query 599 CGTAAAACCCTTTAAATTCTCCGTCATCGTTATCTTCTTCTTCTTCGTCTTCGTTTGATT 658
|||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |
Sbjct 599 CGTAAAACCCTTTAAATTCTCCGTTATTGTTA---TCTTCTTCTTCGTCTTCGTTTGACT 655
Query 659 CCGGTATAGTGTTGAAACCGGTACGAGAGATTGGAGATGAAATCAAAGGCTCGTCGTCGT 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 CCGGTATAGTGTTGAAACCGGTACGTGAGATTGGAGATGAAATCAAAGGCTCGTCGTCGT 715
Query 719 TGTAAACTCTTAACGATTTGTTATTGTTCTTTGATTCTCGGATCTTGGAATCGGATTCGG 778
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 TGTAAACTCTTAATGATTTG---TTGTTCTTTGATTCTCGGATCTTGGAATCGGATTCGG 772
Query 779 ATCCAGATTCGTGgagagaagaagagagagacagaggaagaagCGAAGTTTCTCTCCATG 838
|||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 773 ATCCGGTTTCGTGGAGAGAAGAAGAGAGAGACAGAGGAAGAAGCGACGTTTCTCTCCAAG 832
Query 839 AAGCACCACAAACAGGACAATCGGAGAGTAGATTCCGATCACCGGCGCGTGAAGCTACGC 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AAGCACCACAAACAGGGCAATCGGAGAGTAGATTCCGATCACCGGCGCGTGAAGCTACGC 892
Query 899 AAGGGAAATGAAACGTATGTGAACATTCCGCCGTGAAAATCGCCGTTCCTCTTCCAGCTT 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGGGAAATGAAACGTGTGTGAACATTCCGCCGTGAAAATCGCCGTTCCTCTTCCAGCTT 952
Query 959 TCGCGCTTTGTAAACAAATTCCACATTTGCTACTACTGATGCTACTCTGTTCATAACACA 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 953 TCGCGCTCTGTAAACAAATTCCACATTTGCTACTACTGATGCTACTCTGTTT-TGGTG-A 1010
Query 1019 AACAGT--TTTGATTTGAGTAGAGAAAAGCTCGCCGGAGATTTAGGTGAGGAAGGTGTAG 1076
||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1011 AACAGAGCTTTGATTTGAGGAGAGAAAAGCTCGCTGGAGATTTAGGTGACGAAGGTGTAG 1070
Query 1077 AAGAAGAAGAAGAAACGCTGAGGAA-AGAGAGAGGACTTCTGTTTCTCGTCGGAGTAACG 1135
||||||||||| | |||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 1071 AAGAAGAAGAA-A--CGCTTAG-AAGAGAAAGAGGACTTCTGTTTCTCGTCGGAGTAACG 1126
Query 1136 TCCCCGGAAGTATCGCATTGAAGCTTGGGACTAGCGGGAAGAGACGGTGAAGGAGTGGA- 1194
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1127 TCACCGGAAGTATTGCATTGAAGCTTGGGACTAGCTGGAAGAGACGGTGAAGGAGTG-AT 1185
Query 1195 GA-TAGCTGTAGCAGACCAACTCTGACAAGGAATGGTAGGAGAGCAGGTTACAGAATCGG 1253
|| | ||||||||||||||||| |||||| ||||| |||||||| | |||| |||||||
Sbjct 1186 GAAT-GCTGTAGCAGACCAACTTTGACAACGAATGCTAGGAGAG--G-TTACTGAATCGG 1241
Query 1254 GTCGGGTCTCAGACCTTGGAGTAGACGGGTTAGAGAAAAACCCGAATCTTGAAGTTGTTG 1313
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1242 GTCGGGTCTCGGACCTTGGAGTAGACGGGTTAGAGAAAAACCCGAATCTTGAAG--GAA- 1298
Query 1314 TTGGTTTTTGTCGATCAAGTGAATCATCGACTCTGTTGTTGTCTTTCTTTTTATGAATCG 1373
| | ||| | | || | | | |||||| ||||||||||||||||||
Sbjct 1299 T----------C-ATC--G-GC-TC-T-G--T-TGTTGT---CTTTCTTTTTATGAATCG 1335
Query 1374 AACTCCAAAACGTTCTTCTCAAACCATTCATCATCTTCAACTTCTTTACTTACTATTTCT 1433
|||||||||||||||||| |||||||||||||||||||||||| | ||| | || ||
Sbjct 1336 AACTCCAAAACGTTCTTCGCAAACCATTCATCATCTTCAACTT----A-TTA-T-TT-CT 1387
Query 1434 TCGTAGTGACTTCAACTTTAGATTGATGAGAGGAAAGGAAATGTTTTTGAGGTTTTAATG 1493
||||||||||| ||| ||| |||||||||| ||||| |||| ||||||||||||||||||
Sbjct 1388 TCGTAGTGACTACAATTTTGGATTGATGAGTGGAAATGAAACGTTTTTGAGGTTTTAATG 1447
Query 1494 Ta-agacagagagtggagagata 1515
| ||||||||||| ||||||||
Sbjct 1448 GAGAGACAGAGAGTAGAGAGATA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5