BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37900.1
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353047 jgi|Araly1|353047|fgenesh1_pg.C_scaffold_7000220 3779 0.0
Ahg343817 jgi|Araly1|343817|fgenesh1_pg.C_scaffold_4000159 1162 0.0
Ahg944078 jgi|Araly1|944078|scaffold_700307.1 497 1e-139
Ahg892421 jgi|Araly1|892421|Al_scaffold_0006_417 320 3e-86
> Ahg353047 jgi|Araly1|353047|fgenesh1_pg.C_scaffold_7000220
Length=2364
Score = 3779 bits (2046), Expect = 0.0
Identities = 2261/2367 (96%), Gaps = 6/2367 (0%)
Strand=Plus/Plus
Query 65 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCACAGAAGATAGATATAAGC 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCTCAGAAGATAGAGATAAGC 60
Query 125 GTTGACCT-TTTGGCTGCAGCCAAGAAACACCTTCTCTTCCTCGGAGCTGTTGATCGGAA 183
|||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 61 GTTGACCTCTTT-GCTGCAGCCAAAAAACAGCTTCTCTTCCTCGGAGCTGTTGATCGGAA 119
Query 184 CCGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAGATACAATGCTTATTG 243
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 120 CCGTTGTCTCTACGATGGCCCTGCACTCGACAGAGCCATCTACAGATACAATGCTTATTG 179
Query 244 GCTTCCCTTGCTTGCTCAATACACCGAGTCTTCTTCTATCTGTCAAGGACCATTAGTCCC 303
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 180 GCTTCCCTTGCTTGCTAAATACACCGAGTCTTCTTCGATCTGTGAAGGACCATTAGTCCC 239
Query 304 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGAC 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTACTCCGGTGAGGTATAAGAC 299
Query 364 TGATTGTGAGCAATTCTATGGGAGAGTTCTGGACAATTCTGGCGTTGTATCTTCCGTAAA 423
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 300 TGATTGTGAGCAATTCTATGGGAGAGTTCTTGACAATTCTGGCGTTATATCTTCCGTGAA 359
Query 424 TGGAAACTGCAAATCACAAACTGAAACTCTATGGAAAAGATTGTATCCTACGGAGCCTTA 483
|||||||| ||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 360 TGGAAACTACAAATCACAAACTGAGACTCTATGGAGAAGATTGTATCCTATGGAGCCTTA 419
Query 484 TGACCTTGATTTTGCCAATGCAATCTCAGAGCCAGCAGATGTCTCAGCTCTTGAGAAATG 543
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 TGACCTTGATTTTGGCAAGGCAATCTCAGAGCCAGCAGATATCTCAGCTCTTGAGAAATG 479
Query 544 TACCACTTATGATCTTGTTTTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTC 603
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||
Sbjct 480 TACCACTTATGATCTTGTTTCAGCTGTCAAGAGACAAAGCCCGTTTTACTACCAGATTTC 539
Query 604 AAGAGCTCATGTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATT 663
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 540 AAGAGCTCATGTAGATAATGATGTCTTTCTACAAGAAGCTGTGGCTAGATACAAGGCATT 599
Query 664 TCTCTACTTGATCAAGGGTAACCGAGAAAGATCGATCAAACTTTTCTGTGTTCCGACTTA 723
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 600 TCTCTACTTGATCAAGGGTAACCGAGAAAGGTCGATTAAACTTTTCTGTGTCCCGACTTA 659
Query 724 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTATCTCTTATTGCAATGATTT 783
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTCTCTCTTATTGCAATGATTT 719
Query 784 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGCAAAGG 843
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGTAAAGG 779
Query 844 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 839
Query 904 AAGGTATTGGAAAGCCGGTGCTATGAACCGTGGTAATACCCCAAAGCCAGTCACAACTTC 963
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AAGGTATTGGAAAGCCGGTGCTATGAACCGAGGTAATACCCCAAAGCCAGTCACAACTTC 899
Query 964 TCCTTATGTTTGTTCTGGAAAGAAATCAATTGCGAAAGAGGAAGAGTCCCAGAATGTAAT 1023
|||||||||||| || || |||||||||| || |||||||||||||||||||||||||||
Sbjct 900 TCCTTATGTTTGGTCGGGCAAGAAATCAACTGTGAAAGAGGAAGAGTCCCAGAATGTAAT 959
Query 1024 CCAATATCCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTAAGAACTT 1083
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 960 CCAATTTTCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTGAGAATTT 1019
Query 1084 ACCAGATGCTCACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCAGATTCTCT 1143
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 ACCAGATGCACACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCCGATTCTCT 1079
Query 1144 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1139
Query 1204 TTTGTTCCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1263
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTTGTTTCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1199
Query 1264 GAGCTTAGGTTTCACTTCTTTATCGTTTTCGGAGTTTCT-TTCTCCAGTAACTAAACTCT 1322
||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||
Sbjct 1200 GAGCTTAGGTTTCACTTCTTTATCGCTTTCGGAGTTTCTGTT-TCCAGTTACTAAACTCT 1258
Query 1323 CTGTTGAGAAGTGGTTGGAGTTAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1382
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGTTGAGAAGTGGTTGGAGATAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1318
Query 1383 CCATCTCTTTGAGAGTCGCTGTCTCGTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1442
|||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 CCATCTCTCTGCGAGTTGCTGTCTCTTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1378
Query 1443 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTCCTT-CCTATGCTCCGAAAG 1501
||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||
Sbjct 1379 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTC-TTGCCTATGATCAGAAAG 1437
Query 1502 GTACGTCTTGCTAAGAGTTTTACACGCGTTGTTGATGAAACCGAAACAGAGGTGATCAAC 1561
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 GTACGTCTTGCAAAGAGTTTTACACGCGTTGTTGATGAAACTGAAACAGAGGTGATCAAC 1497
Query 1562 CTCCAAATGAGGAACTCCAATGACGCAGCACCAAAAGGTGATAGAAGACAAGTTATTGGT 1621
||||||||||| |||||||| ||| ||||||| |||| ||||||||||||||| ||||||
Sbjct 1498 CTCCAAATGAGAAACTCCAACGACACAGCACCCAAAGCTGATAGAAGACAAGTGATTGGT 1557
Query 1622 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCACTTTCTGGTCTCTG 1681
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1558 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCAATTTCTGGTCTCTG 1617
Query 1682 CTCGACTCAAAATGGTCACTTAAGCAGACATGCAATCCTGCCACAGATGGTCCTCTGTTT 1741
|| || |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1618 CTTGATTCAAAATGGTCACTTAAGCAGACAAGCAATCCTGCAACAGATGGTCCTCTGTTT 1677
Query 1742 GAGCTTTCCGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAGTATGAGCCA 1801
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 GAGCTTTCGGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAATATGAGCCA 1737
Query 1802 AAACATTGCTCAAAGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1861
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AAACATTGCTCAAGGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1797
Query 1862 CAACATCCTTATGGTAAAGCTGTGGGGTTACTCGATTTGAAGTTCGGTTCTATTGAGGCA 1921
||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1798 CAATATCCTTATGGCAAAGCTGTGGGGTTACTTGATTTGAAGTTGGGTTCTATTGAGGCA 1857
Query 1922 AATGAGAAATGGCTGGTTTTGCCTGGAATGGTATCTTCTTTCATACTCAGTGATCTTCTT 1981
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1858 AATGAGAAATGGCTGGTCTTGCCAGGAATTGTATCTTCTTTCATACTCAGTGATCTTCTT 1917
Query 1982 AAGAAGGAAGGCTTTAGTGCAGCCGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 2041
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1918 AAGAAGGAAGGCTTTAGTGCAGCTGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 1977
Query 2042 GAAAGTACGGAGATTGATGTTTTGAGTCAAGAAAAGCTAGAAGAAGAAACAATGATGGAT 2101
|||| || |||||||| ||||||| ||||| || | ||||||||||||||||||| ||
Sbjct 1978 GAAAATAAAGAGATTGACGTTTTGACTCAAGTGAATCAAGAAGAAGAAACAATGATGAAT 2037
Query 2102 GTGGATACGACTACACCAGTTGCTGTAGCGGCCGAGAAGATCAACGGTGGTGCTAGGTGC 2161
||||| || ||||| | ||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2038 GTGGACACAACTACTCAAGTTGCTGTAGCGACCGAGAAGATCAATGGTGGTGCTAGGTGC 2097
Query 2162 TTTTCGAAGGAGCTAAGTGGGAACATGATTGAAGAAGAaggtggtcactgtggtggttgt 2221
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2098 CTTTCGAAGGAGCTAAGTGGGAACATGGTTGAAGAAGAAGGTGGTCACTGTGGTGGTTGT 2157
Query 2222 ggaggttgtggtggatgtggaggtggaggtggatgtggtggtggtggtaggtgcggtggG 2281
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2158 GGAGGTTGTGGTGGATGTGGAGGTGGAGGTGGATGTGGTGGTGGCGGTAGGTGCGGTGGG 2217
Query 2282 ATGACAAAGATAGAAGGCTGCGGCGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2341
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2218 ATGACAAAGATAGAAGGTTGCGGTGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2277
Query 2342 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCTAATGGAAATGCTCCATCA 2401
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2278 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCCAATGGAAATGCTCCATCA 2337
Query 2402 GTAGAAAACGACGCAGTTACAGCTTGA 2428
|||||||||||||||||||||||||||
Sbjct 2338 GTAGAAAACGACGCAGTTACAGCTTGA 2364
> Ahg343817 jgi|Araly1|343817|fgenesh1_pg.C_scaffold_4000159
Length=2763
Score = 1162 bits (629), Expect = 0.0
Identities = 1551/1975 (79%), Gaps = 148/1975 (7%)
Strand=Plus/Plus
Query 90 TGGAGTGGAACGAAGCACAGAAGATAGATATAAGCGTTGACCTT-TTGGCTGCAGCCAAG 148
|||||||| ||||| |||||||| || ||||||||||| ||| | |||||||| ||
Sbjct 245 TGGAGTGGCTTGAAGCTCAGAAGATTGAGATAAGCGTTGA-CTTACTAGCTGCAGCTAA- 302
Query 149 A-AACACCTTCTCTTCCTCG-GAGCTGTTGATCGGAACCGTTGTCTCTACGATGGCCCTG 206
| |||| ||| | ||||||| | |||||||| |||| || || ||||||||||| ||||
Sbjct 303 ACAACAGCTTTTGTTCCTCGCTA-CTGTTGATAGGAATCGATGGCTCTACGATGGTCCTG 361
Query 207 CACTCCAAAGAGCCATCTACAGATACAATGCTTATTGGCTTCCCTTGCTTGCTC-AATAC 265
| ||| ||| |||||||||||| |||||||||| ||||||||| |||||||| | |||||
Sbjct 362 CGCTCGAAAAAGCCATCTACAGGTACAATGCTTGTTGGCTTCCTTTGCTTGC-CAAATAC 420
Query 266 -ACCGAGTCTTCTTCTATCT-GTCAAGGACCATTAGTCCCTCCTCTTGACTGTGAATGGG 323
| ||||| || || | | || |||| | || |||||||||||||| |||||||||
Sbjct 421 TA-TGAGTCATCATCGGT-TAGTGAAGGGTCTTTGGTCCCTCCTCTTGATTGTGAATGGA 478
Query 324 TTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGACTGATTGTGAGCAATTCTATG 383
|||||||||||||||||||||||||||||||||||||| ||| |||||| |||| || |
Sbjct 479 TTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGTTTGACTGTGAGAAATTTTACG 538
Query 384 GGAGAGTTCTGGACAATTCTGGCGTTGTATCTTCCGTAAATGGAAACTGCAAATCACAAA 443
|||||||||| ||||||||||| ||||||||||| || ||||| |||||||||| ||||
Sbjct 539 GGAGAGTTCTCGACAATTCTGGTGTTGTATCTTCTGTTAATGGGAACTGCAAATTGCAAA 598
Query 444 CTGAA-ACTCTATGGAAAAGATTGTATCCT-ACGGAGCCTTATGACCTTGATTTTGCC-A 500
||||| | | | |||||||||||||||||| | ||| |||||||| || || || | |
Sbjct 599 CTGAAGATT-TGTGGAAAAGATTGTATCCTGA-GGAACCTTATGAGCTAGACTT-GAATA 655
Query 501 ATGCA-ATCTCAGAGC-CAGC---A-GATGTCT-CAGCTCTTGAGAAATGTACCACTTAT 553
| | | | ||| ||| || | | || ||| ||| |||||||||||| |||| ||||
Sbjct 656 AGGTAGA-CTCGGAGGACATCTCTAAGAAATCTTCAGATCTTGAGAAATGCACCAATTAT 714
Query 554 GATCTTGTTTTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTCAAGAGCTCAT 613
||||| |||| ||| || ||||| || |||||||||| |||||||||||| ||| | |||
Sbjct 715 GATCTAGTTTCAGCGGTTAAGAGGCAGAGCCCATTTTACTACCAGGTTTCGAGATCCCAT 774
Query 614 GTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCTCTA-CTT 672
||| | ||||| || ||||| ||||||||||| |||||||| || | |||||||| ||
Sbjct 775 GTAAACAATGAAGTTTTTCTACAAGAAGCTGTTGCTAGATATAAGGGGTTTCTCTATCT- 833
Query 673 GATCAAGG-GTAACCGAGAAAGATCGATCAAACT-TTTCTGTGTTCCGACTTACGATATT 730
||| ||| | ||| ||||||| || | |||| ||| |||||||||||||| ||| ||
Sbjct 834 GATTAAGACG-AACAGAGAAAGGTCTTTAAAACGGTTT-TGTGTTCCGACTTATGATGTT 891
Query 731 GATCTTATCTGGCACACACATCAGCTTCATGCTA-TCTCTTATTGCAATGATTTG-ACTA 788
|| ||||||||||||||||||||||| ||| | | | ||||| || ||||| || | |
Sbjct 892 GACCTTATCTGGCACACACATCAGCTGCATCC-AGTTTCTTACTGTGATGATATGGAG-A 949
Query 789 AGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAG-CAAAGGTAAG 847
|| | ||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||
Sbjct 950 AGCTCATTGGTAAGGTGTTGGAGCATGATGACACAGATTCTGACCG-AGGCAAAGGTAAG 1008
Query 848 AAGCTTGATACTGGTTTCTCTG-GAACTACTGCTCAATGGGAAGAAACATTTGGT-CGAA 905
|| || ||||| ||||| ||| || ||||||| |||||||| || | |||||| | ||
Sbjct 1009 AAACTCGATACCGGTTTTTCTAAGA-CTACTGCACAATGGGAGGAGATGTTTGGTAC-AA 1066
Query 906 GGTATTGGAAAGCCGGTGCTATGAACCGTGGTAATACCCCAA-AGCCAGTCACAACTTCT 964
|||| |||||||||||||| ||| | | || || || || | || ||||||||||||
Sbjct 1067 GGTACTGGAAAGCCGGTGCAATGCATAGAGGCAAGACACCTGCA-CCTGTCACAACTTCT 1125
Query 965 CCTTATG-TT-TG-T-TCT-GG--AAAGAAATCAATTGCGAAAGAGGAAGAGTCCCAGAA 1017
||||||| || || | | | || |||||| ||| ||| |||||||| | ||| ||||
Sbjct 1126 CCTTATGCTTCTGATGTTTTGGTCAAAGAAC-CAACTGCAAAAGAGGAT-A-TCC-AGAA 1181
Query 1018 TGTAATCCAATATCCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTAA 1077
| ||||||||| |||||||||| |||| |||| ||| ||||||||||| | |||||||
Sbjct 1182 TTTAATCCAATTTCCAGAGGTGGAAGTTGTTGAGGTTCTCTTGGAGATTATCGGGGTTA- 1240
Query 1078 GAA-CTTACCAGATGCTCACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCAG 1136
||| ||||||||||| || || |||||| ||| ||| ||||||| ||||||| || |
Sbjct 1241 GAAACTTACCAGATGGACATAAGGGAAAGATCTCGGTTATGTTCAGTAAAACTCGGCCTG 1300
Query 1137 ATTCTCTGTTT-AACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAG 1195
||||||| ||| || ||||| ||||| || ||| ||||||| ||| ||| ||| |||||
Sbjct 1301 ATTCTCT-TTTCAATGCTGAACGTAGACTGACCATTTTATCCGAGG-TTG-GGG-AAAAG 1356
Query 1196 CAAGTTGCTT-TGTTCCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAA-CTAATGTC-T 1252
||||| ||| | ||||||||||| ||||||||||||||| |||| ||| || || || |
Sbjct 1357 CAAGTAGCTACT-TTCCAGTGTGAACCTACAGGAGAGCTT-GTTTTCAAACTTATTTCCT 1414
Query 1253 -T-C-C-----AAG-T-C---T---AAGAG--CTTA-------GG-TTTCACTTCTTTAT 1286
| | | ||| | | | ||||| | || || ||| |||||||||
Sbjct 1415 CTTCACCGTCTAAGATACCAGTTTCAAGAGAGCCTAAAAACTTGGGTTTTGCTTCTTTAT 1474
Query 1287 CGTTTTCGGAGTTTCT-TTCTCCAGT-A--ACTAAACTCTCTGTTGAGAAGTGGTTGGAG 1342
| | ||||||||| || |||||| | ||| ||||||||||||||||||||||||||
Sbjct 1475 CACTAAAGGAGTTTCTATT-TCCAGTTATTACTCAACTCTCTGTTGAGAAGTGGTTGGAG 1533
Query 1343 TTAACACCAACTAAAAGGG-G-AAAGGCAGATGATCCGAATCCCATCT-CTTTGAGAGTC 1399
|||||||| | |||| || | |||| ||||| | || || || | | | |||||
Sbjct 1534 TTAACACCCAGTAAA-GGTAGCAAAG-CAGATCAAA--AA-CCTATAAGCCT-GCGAGTC 1587
Query 1400 GCTGTCTCGTTCACCCCGCCAACT-CGAAGTCCAACTGTTCT-ACATTTGGTTCAAGCAA 1457
||||||||||| || || |||| | || |||||| | || || ||| |||||||| |||
Sbjct 1588 GCTGTCTCGTTTACTCCACCAA-TACGCAGTCCATCAGT-CTTACACATGGTTCAATCAA 1645
Query 1458 GACCATCACTG-AAAGGCTCTTGTTTCCTTCCTATGCTCCGAAAGGTAC-GTCTTGCTAA 1515
||||| | || ||||||||||| ||| |||| || | ||||| | | ||||||||||
Sbjct 1646 GACCACCG-TGGAAAGGCTCTTGCTTCTTTCCAATTATGGGAAAG-TCCCGTCTTGCTAA 1703
Query 1516 GAGTTTTACACGCGTTGTTGATGAAACCGAAACAGAGGTGATCA-ACCTCCAAATGAGGA 1574
||||| |||| | |||||||||||||| ||||||||||||||| || || |||| ||||
Sbjct 1704 GAGTTCAACACACATTGTTGATGAAACCCAAACAGAGGTGATCACACTTC-AAATTAGGA 1762
Query 1575 ACTCCAATGACGCAGCACCA---AAAGGTGAT-AGAAGACAAGTTATTGGTGTAAAAGAG 1630
|||||| ||| | |||| | |||| |||| | |||||||||||||||||| | |||
Sbjct 1763 ACTCCATTGATGGAGCAAAACTTAAAGATGATCA-AAGACAAGTTATTGGTGTGATAGAC 1821
Query 1631 TGTGGTGAAACTT-A-TGTTTTGGCAGAGTATGATGGCACTTTCTGGTCTCTGCTCGACT 1688
| |||||||||| | || || | | || |||| ||| | |||||||||| | | ||||
Sbjct 1822 TCTGGTGAAACTCGAGTGCTT-G-CGGATTATGCTGGTAGTTTCTGGTCTTTATTGGACT 1879
Query 1689 CAAAATGGTCACTTAAGCAGACATGCAAT-CCTGCCAC---AGATGGTCCTCTGTTTGAG 1744
| ||||||||||||||||| ||| ||| ||| |||| |||| |||||| ||||||
Sbjct 1880 CGAAATGGTCACTTAAGCAAACA---AATGCCT-CCACTGCAGATAATCCTCTCTTTGAG 1935
Query 1745 CTTTCCGGTACTCGAATGGTGAA-AGTTTACTCCGGG-AGAAAGCTGGAGTATGAGCCAA 1802
|||| ||| ||||| ||||||| | ||| ||| ||| || |||||||| ||||| ||||
Sbjct 1936 CTTTTGGGTCCTCGAGTGGTGAACATTTT-CTC-GGGTAGGAAGCTGGATTATGAACCAA 1993
Query 1803 AACATTGCTCAAAGCTAAGAAGCGAGCAAGATTTCATGACTGCT-GTTGAATTCTCAAAG 1861
|||| ||| |||| || ||||| || ||||||||||||||| || || ||||| || |||
Sbjct 1994 AACACTGCGCAAACCTTAGAAGTGATCAAGATTTCATGACT-CTTGTGGAATTTTCCAAG 2052
Query 1862 CAACATCCTTATGGTAAAGCTGTGGGGTTACTCGATTTGA-AGTTCGGTTCTATTGAGGC 1920
|||||||| ||||| |||||||| || || | ||| ||| | || ||||| ||||||||
Sbjct 2053 CAACATCCATATGGGAAAGCTGTAGGATTGGTTGATATGAGATTT-GGTTCCATTGAGGC 2111
Query 1921 AAATG--A--GA-AAT-GGCTGGTTTTGCCTGGAATGGTATCTTCTTTCATACTC 1969
|| || | || ||| || |||||||||| ||||| |||||| |||||||||||
Sbjct 2112 AAGTGTGAAAGAGAATTGGTTGGTTTTGCCCGGAATCGTATCTGCTTTCATACTC 2166
> Ahg944078 jgi|Araly1|944078|scaffold_700307.1
Length=1120
Score = 497 bits (269), Expect = 1e-139
Identities = 296/309 (96%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 503 GCAATCTCAGAGCCAGCAGATGTCTCAGCTCTTGAGAAATGTACCACTTATGATCTTGTT 562
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 336 GCAATCTCAGAGCCAGCAAATATCTCAGCTCTTGAGAAATGTACCACTTACGATCTTGTT 395
Query 563 TTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTCAAGAGCTCATGTAGATAAT 622
| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 396 TCAACTGTCAAGAGACAAAGCCCATTTTACTACCAGGTTTCAAGAGCTCATGTAGATAAT 455
Query 623 GACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCTCTACTTGATCAAGGGT 682
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 456 GATGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCTCTACTTGATCAAAGGT 515
Query 683 AACCGAGAAAGATCGATCAAACTTTTCTGTGTTCCGACTTACGATATTGATCTTATCTGG 742
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AACCGAGAAAGGTCGATTAAACTTTTCTGTGTTCCGACTTACGATATTGATCTTATCTGG 575
Query 743 CACACACATCAGCTTCATGCT-ATCTCTTATTGCAATGATTTGACTAAGATGATTGGTAA 801
||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 576 CACACACATCAGCTTCATGCTCA-CTCTTACTGCAATGATTTGACTAAGATGATTGGTAA 634
Query 802 GGTCTTGGA 810
|||||||||
Sbjct 635 GGTCTTGGA 643
Score = 152 bits (82), Expect = 1e-35
Identities = 99/107 (93%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 123 GCGTTGACCT-TTTGGCTGCAGCCAAGAAACACCTTCTCTTCCTCGGAGCTGTTGATCGG 181
|||||||||| ||| |||||||||||||||||||| | |||| |||||||||||||||
Sbjct 180 GCGTTGACCTCTTT-GCTGCAGCCAAGAAACACCTCCAGTTCCACGGAGCTGTTGATCGC 238
Query 182 AACCGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAG 228
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACTGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAG 285
Score = 87.9 bits (47), Expect = 3e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 AGTCCCTCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTAATCCGG 350
||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 284 AGTCCCTCCTCTTGACTCTGAATGGGTTTGGCATTGCCACAGGCTTGATCCGG 336
> Ahg892421 jgi|Araly1|892421|Al_scaffold_0006_417
Length=594
Score = 320 bits (173), Expect = 3e-86
Identities = 192/201 (96%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 598 GGTTTCAAGAGCTCATGTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAA 657
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 39 GGTTTCAAGAGCTCATGTAGATAATGACGTCTTTCTACAAGAAGCTGTGGCTAGATACAA 98
Query 658 AGCATTTCTCTACTTGATCAAGGGTAACCGAGAAAGATCGATCAAACTTTTCTGTGTTCC 717
|| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 99 AGTATTTCTCTACTTGATCAAAGGTAACCGAGAAAGGTCGATTAAACTTTTCTGTGTTCC 158
Query 718 GACTTACGATATTGATCTTATCTGGCACACACATCAGCTTCATGCT-ATCTCTTATTGCA 776
|||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||
Sbjct 159 GACTTACGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTCA-CTCCTACTGCA 217
Query 777 ATGATTTGACTAAGATGATTG 797
|||||||||||||||||||||
Sbjct 218 ATGATTTGACTAAGATGATTG 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91492768490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5