BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37920.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208 1954 0.0
Ahg928508 jgi|Araly1|928508|scaffold_300965.1 279 3e-74
> Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208
Length=1932
Score = 1954 bits (1058), Expect = 0.0
Identities = 1220/1299 (94%), Gaps = 7/1299 (1%)
Strand=Plus/Plus
Query 136 TGAGGGAGAAAAAATGGCGAATTTACTGGAAACATCAATCTTTTTCTCCTCTGCTGATAA 195
||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 639 TGAGGGACAAAAAATGGCGAATTTACTGGAAACATCAATCTTCTTCTCCTCGGCTGATAA 698
Query 196 ATTACTGTCTTTCCCGCCTAAGAATTCTCAAACCCATCATCTCCCTTTCTCTGCTTTCAT 255
|||| | || ||| || || | |||||||||||||||| |||||||||||||||||||||
Sbjct 699 ATTAATTTCATTCTCGTCTCATAATTCTCAAACCCATCTTCTCCCTTTCTCTGCTTTCAT 758
Query 256 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTACCGACACTGTCAC 315
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 759 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTTCCGACACTGTCAC 818
Query 316 TTACAATGGCACT-ACAAGTGCGGAAGTAAAAAGCTCTGTTGAGGATCCAATGGAAGTTG 374
||||| | ||| | || ||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 819 TTACAGTAGCA-TCACCAGTACGGAGGTAAAAAGCTCTGTTGAGGATCCTATGGAAGTTG 877
Query 375 AGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGATTATTGATCTCTTCTTGA 434
|||||||| |||| ||||||||||||||||| ||||||||||| |||||||| || ||||
Sbjct 878 AGGTTGCTCAAGGCTACACTATGGCTCAGTTCTGTGACAAGATCATTGATCTTTTTTTGA 937
Query 435 ATGAGAAACCTAAAGTTAAACAATGGAAGACGTATTTGGTTTTAAGAGATGAATGGAACA 494
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 938 ATGAGAAACCTAGAGTTAAACAATGGAAGACTTATTTGGTTTTAAGAGATGAATGGAACA 997
Query 495 AGTACAGTGTTAATTTCTATAAGCGTTGCAGAATCCGAGCTGATACCGAAACTGATCCTA 554
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 998 AGTACAGTGTTAATTTCTATAGGCGTTGCAGAATCCGAGCTGATTCCGAAACTGATCCTA 1057
Query 555 TATTGAAGCAGAAACTGGTATCTTTGGAAAGTAAAGTCAAGAAGATAGATAAGGAAATGG 614
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1058 TATTGAAGCAGAAGCTGTTATCTTTGGAAAGTAAAGTCAAGAAGATAGATGAGGAAATGG 1117
Query 615 AGAAACACAATGACCTTTTGAAGGAGATTCAAGAAAACCCAACAGACATAAACGCAATCG 674
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1118 AGAAGCACAATGACCTTTTGAAGGAGATTCAAGAAAACCCGACTGACATAAACGCAATCG 1177
Query 675 CTGCCAAGAGACGCAGAGACTTTACGGGAGAGTTTTTCCGCTATGTTACTTTGTTATCAG 734
||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 1178 CTGCCAAGAGACGTAGAGACTTCACAGGAGAGTTTTTCCGCTATGTTGCTTTGTTATCAG 1237
Query 735 AAACTCTTGATGGCTTGGAAGACCGAGATGCTGTTGCGAGGCTTGCAACTAGATGTTTAT 794
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1238 AAACTCTTGATGGCTTAGAAGACCGAGATGCTGTCGCAAGGCTTGCAACTAGATGTTTAT 1297
Query 795 CTGCTGTGAGTGCTTATGACAACACGTTGGAGAGTGTTGAGACTCTAGATACTGCTCAAG 854
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 1298 CTGCTGTGAGTGCTTATGACAATACATTGGAGAGTGTTGAGACTCTAGATGCTGCTCAAG 1357
Query 855 CAAAGTTTGAAGATATTTTAAACTCTCCATCCGTGGATTCTGCTTGCGAAAAGATCAGAA 914
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1358 CAAAGTTTGATGATATTTTAAACTCTCCATCCGTGGATGCCGCTTGCGAAAAGATCAGAA 1417
Query 915 GTTTAGCCAAGGCAAAGGAGCTTGATTCCTCATTGATCTTATTGATCAACAGTGCATACG 974
||||||||||| |||||||||| ||||| |||||||||||||| || |||||||| ||||
Sbjct 1418 GTTTAGCCAAGTCAAAGGAGCTAGATTCTTCATTGATCTTATTAATAAACAGTGCTTACG 1477
Query 975 CTGCTGCAAAAGAGTCTCAAACTGTTACGAACGAGGCTAAAGACATAATGTATCATTTAT 1034
|||| || |||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1478 CTGCAGCTAAAGAGTCTCAAACCGTTACAAACGAGGCTAAAGACGTAATGTATCATTTAT 1537
Query 1035 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1597
Query 1095 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCCCTAGCTACAGCATTCTCTC 1154
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1598 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCTCTAGCAACAGCATTCTCTC 1657
Query 1155 CTGGTGATGACCACGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1214
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CTGGCGATGACCATGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1717
Query 1215 ATAAGTGGATAAAGATAATGCTTGATGCTTACCATCTCAACAAAGAAGAAACAGACATTA 1274
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1718 ATAAGTGGATAAAGATAATGCTTGATGCATACCATCTCAACAAAGAAGAAACTGACATTA 1777
Query 1275 AAGAAGCTAAACAGATGAGCCAACCTATCGTTATTCAGCGGCTTTTCATTCTCAAGGACA 1334
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1778 AAGAAGCTAAACAGATGAGCCAACCAATCGTGATTCAGCGGCTTTTCATCCTCAAGGACA 1837
Query 1335 CTATCGAAGACGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAACTCCAAAGAAGG 1394
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1838 CGATCGAAGATGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAAATCCAAAGAAGG 1897
Query 1395 AAGAAGAAGATACGA-CTATTGAAGATTTTTTGAACTGA 1432
||||||| ||| | || ||||||| ||||||||||||
Sbjct 1898 AAGAAGA---TAC-ATCTGTTGAAGAATTTTTGAACTGA 1932
> Ahg928508 jgi|Araly1|928508|scaffold_300965.1
Length=227
Score = 279 bits (151), Expect = 3e-74
Identities = 178/190 (94%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 238 CCC-TTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCTTTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCT 60
Query 297 TTGCTACCGACACTGTCACTTACAATGGCACTACAAGTGCGGAAGTAAAAAGCTCTGTTG 356
|||||||||||||||||||||||| ||||||||| || |||||||||||| |||||
Sbjct 61 TTGCTACCGACACTGTCACTTACAGTGGCACTACCAG-----AAGTAAAAAGCTTTGTTG 115
Query 357 AGGATCCAATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGA 416
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 AGGATCTTATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTCTGTGACAAGA 175
Query 417 TTATTGATCT 426
||||||||||
Sbjct 176 TTATTGATCT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5