BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37925.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208 907 0.0
Ahg478160 jgi|Araly1|478160|fgenesh2_kg.3__861__AT4G37925.1 704 0.0
> Ahg327981 jgi|Araly1|327981|fgenesh1_pm.C_scaffold_7000208
Length=1932
Score = 907 bits (491), Expect = 0.0
Identities = 594/642 (93%), Gaps = 13/642 (2%)
Strand=Plus/Plus
Query 70 ATGGTTGCAGCATTCTCTTACACTGCCTGCACCAAGCTTTCTCTATTACATCCTTCTATG 129
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 1 ATGGTTGCATCATTCTCTTACACTGCCTACACCAAGCTTTCTCTATTACATCCTCCCATG 60
Query 130 GTTGCTCAAATCCGACCAAGAACAACACAAAAGGCGTTCGTGGTGACAAATCCGGAACAA 189
| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct 61 GCTGCTCAAATCCGACCAAGAACAACACAGAAGACGTTCGTAGTGACAAATCCTGAACAA 120
Query 190 GACAGTACTCTTGAAGTACAAGAAACAGAGACACTCAAAGAAGAGCAATCAACAGAGAAG 249
||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 GACAGTACTCTGGAGGTACAAGAAACAGAGCCAATCAAAGAAGAGCAATCAACAGAGAAG 180
Query 250 ATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAGCTGAACGTGAAGAGCAAG 309
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 181 ATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAACTAAACGTGAAGAGCAAA 240
Query 310 GGTATGGGCGATTTTGGTGGTCAGTGGCTAAGCAGTGTCACACGTCACGTTAGGATCTAC 369
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTATGGGCCAGTTTGGTGGTCAGTGGCTAAGCAGTGTCACACGTCACGTTAGGATCTAC 300
Query 370 GCTGCTTATATTGATCCAGAGACTTGTGAGTTTGACCAGTCACAAATGGATAAACTCACT 429
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTGCTTATATCGACCCCGAGACTTGTGAGTTTGACCAGTCACAAATGGATAAACTCACT 360
Query 430 TTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAAAGCTGTAACAAGGTCTAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAAAGCTGTAACAAGGTCTAT 420
Query 490 TCTTATTTCCAAGAACTCGTCGATCACTACGAGGG------A-GCA--CCATTA-ACGGA 539
||||||||||||||||||||||||||||||||| | | | || ||| | |
Sbjct 421 TCTTATTTCCAAGAACTCGTCGATCACTACGAGACTCCTTCAAGAAGACC-TTACAAT-A 478
Query 540 GT-ACACATTGAGATTGATAGGATCGGACGTAGAACATTACATAAGGAAGATGTTGTTCG 598
| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct 479 TTTACACATTAAGATTGATAGGATCAGACGTAGAACATTACATAAGGAAAATGTTATTTG 538
Query 599 ATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGAAAGCCTC 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 ATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAACTTCAGTATGGGAAAGCCTC 598
Query 659 GTGTACAATTCAATACCAGTAACATTGAAGGTGGTGGAGATG 700
|||| ||||||||||| |||||||||||||||||||||||||
Sbjct 599 GTGTTCAATTCAATACTAGTAACATTGAAGGTGGTGGAGATG 640
> Ahg478160 jgi|Araly1|478160|fgenesh2_kg.3__861__AT4G37925.1
Length=582
Score = 704 bits (381), Expect = 0.0
Identities = 497/548 (91%), Gaps = 28/548 (5%)
Strand=Plus/Plus
Query 172 GTGACAAATCCGGAACAAGACAGTACTCTTGAAGTACAAGAAACAGAGACACTCAAAGAA 231
||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1 GTGACAAATCCTGAACAAGACAGTACTCTGGAGGTACAAGAAACAGAGACAATCAAAGAA 60
Query 232 GAGCAATCAACAGAGAAGATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAG 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCAATCAACAGAGAAGATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAA 120
Query 292 CTGAACGTGAAGAGCAAGGGTATGGGCGATTTTGGTGGTCAGTGGCTAAGCAGTGTCACA 351
|| |||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 121 CTAAACGTGAAGAGCAAAGGTATGGGCCAGTTTGGTGATCAGTGGCTAAGCAGTGTCACA 180
Query 352 CGTCACGTTAGGATCTACGCTGCTTATATTGATCCAGAGACTTGTGAGTTTGACCAGTCA 411
||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct 181 CGTCACGTTAGGATCTACGCTGCTTATATCGACCCCGAGACTTGTGAGTTTGATCAGTCA 240
Query 412 CAAATGGATAAACTCACTTTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAATGGATAAACTCACTTTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAA 300
Query 472 AGCTGTAACAAGGTCTATTCTTATTTCCAAGAACTCGTCGATCACTACGAGGGAGCACCA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTGTAACAAGGTCTATTCTTATTTCCAAGAACTCGTCGATCACTACGAGGGAGCACCA 360
Query 532 TTAACGGAGTACACATTGAGATTGATAGGATCGGACGTAGAACATTACATAAGGAAGATG 591
| || || | || | | | | || | || ||| || | | ||||
Sbjct 361 -T-------TA-AC---G-GA--G-T---A-C--ACAT-TAAGATT-GAT-A-G--GATG 392
Query 592 TTGTTCGATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGA 651
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TTATTTGATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGA 452
Query 652 AAGCCTCGTGTACAATTCAATACCAGTAACATTGAAGGTGGTGGAGATGGTCAGCCTCAA 711
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 453 AAGCCTCGTGTTCAATTCAATACTAGTAACATTGAAGGTGGTGGAGATGGTCAGCCTCAA 512
Query 712 GAGGACGC 719
|| |||||
Sbjct 513 GAAGACGC 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5